Wall clock time and date at job start Fri Apr 10 2020 22:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38543 * 120.81443 * 2 1 4 4 C 1.38233 * 119.23646 * 180.02562 * 3 2 1 5 5 N 1.31887 * 120.92604 * 0.02562 * 4 3 2 6 6 C 1.31797 * 121.79617 * 359.66205 * 5 4 3 7 7 C 1.38909 * 120.65526 * 0.62737 * 6 5 4 8 8 N 1.39873 * 120.48485 * 179.67877 * 7 6 5 9 9 C 1.46506 * 119.99761 * 104.67829 * 8 7 6 10 10 C 1.34770 * 120.00312 * 284.39711 * 8 7 6 11 11 O 1.21607 * 120.00280 * 187.34151 * 10 8 7 12 12 C 1.47500 * 119.99964 * 7.34522 * 10 8 7 13 13 C 1.39678 * 120.20168 * 324.40690 * 12 10 8 14 14 C 1.37819 * 119.91963 * 179.97438 * 13 12 10 15 15 C 1.38575 * 120.32725 * 0.02562 * 14 13 12 16 16 C 1.38028 * 120.40438 * 359.97438 * 15 14 13 17 17 C 1.38835 * 120.07060 * 359.74199 * 16 15 14 18 18 O 1.35518 * 120.15841 * 180.27688 * 17 16 15 19 19 C 1.34812 * 117.00635 * 19.58992 * 18 17 16 20 20 H 1.08004 * 119.99338 * 8.25676 * 19 18 17 21 21 C 1.38697 * 120.00455 * 188.25836 * 19 18 17 22 22 N 1.31511 * 119.99995 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99789 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47379 * 90.00287 * 23 21 19 25 25 H 1.48502 * 109.47024 * 209.99940 * 23 21 19 26 26 H 1.48502 * 109.47170 * 330.00125 * 23 21 19 27 27 H 1.09004 * 109.47017 * 269.97857 * 1 2 3 28 28 H 1.09001 * 109.47541 * 29.97947 * 1 2 3 29 29 H 1.08998 * 109.46915 * 149.97917 * 1 2 3 30 30 H 1.07997 * 120.38428 * 359.97438 * 3 2 1 31 31 H 1.07997 * 119.53975 * 180.02562 * 4 3 2 32 32 H 1.07998 * 119.67117 * 180.33591 * 6 5 4 33 33 H 1.09008 * 109.47085 * 95.56479 * 9 8 7 34 34 H 1.08997 * 109.47368 * 215.56500 * 9 8 7 35 35 H 1.09004 * 109.46893 * 335.57082 * 9 8 7 36 36 H 1.08000 * 120.03852 * 359.97438 * 13 12 10 37 37 H 1.08004 * 119.83723 * 179.97438 * 14 13 12 38 38 H 1.08001 * 119.80018 * 179.97438 * 15 14 13 39 39 H 1.08002 * 119.96578 * 180.02562 * 16 15 14 40 40 H 0.96998 * 119.99997 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1899 0.0000 4 6 3.5985 1.1518 -0.0005 5 7 4.2449 0.0022 -0.0016 6 6 3.6089 -1.1521 0.0045 7 6 2.2205 -1.1958 -0.0008 8 7 1.5491 -2.4229 -0.0011 9 6 0.9107 -2.9089 1.2247 10 6 1.4847 -3.1555 -1.1304 11 8 0.7913 -4.1539 -1.1689 12 6 2.2552 -2.7466 -2.3198 13 6 2.4283 -1.3920 -2.6132 14 6 3.1498 -1.0163 -3.7258 15 6 3.7049 -1.9764 -4.5568 16 6 3.5421 -3.3187 -4.2796 17 6 2.8235 -3.7157 -3.1600 18 8 2.6673 -5.0331 -2.8831 19 6 3.5364 -5.8871 -3.4600 20 1 4.3905 -5.5056 -3.9998 21 6 3.3336 -7.2555 -3.3604 22 7 4.1812 -8.0886 -3.9237 23 14 1.8567 -7.9153 -2.4262 24 1 0.7086 -8.0638 -3.3563 25 1 2.1924 -9.2375 -1.8394 26 1 1.4948 -6.9692 -1.3403 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3634 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6964 2.1362 -0.0004 31 1 4.1566 2.0764 -0.0001 32 1 4.1727 -2.0732 0.0089 33 1 -0.1448 -2.6368 1.2171 34 1 1.0060 -3.9933 1.2787 35 1 1.3959 -2.4578 2.0904 36 1 1.9974 -0.6399 -1.9690 37 1 3.2825 0.0315 -3.9517 38 1 4.2683 -1.6725 -5.4266 39 1 3.9782 -4.0610 -4.9318 40 1 4.0396 -9.0456 -3.8537 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766828330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:15 Heat of formation + Delta-G solvation = 20.926151 kcal Electronic energy + Delta-G solvation = -26299.396388 eV Core-core repulsion = 22659.892619 eV Total energy + Delta-G solvation = -3639.503769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.18441 -39.46044 -38.40749 -36.54797 -35.61030 -33.58783 -32.46072 -31.06190 -30.21657 -29.24385 -28.13259 -26.68282 -25.22861 -23.94711 -22.59735 -22.22001 -21.40956 -19.76412 -18.05912 -17.82025 -16.95144 -16.71096 -16.37979 -16.05054 -14.98703 -14.86909 -14.70208 -14.35725 -14.15811 -14.00104 -13.64699 -13.52860 -13.10805 -13.02598 -12.92895 -12.82997 -12.51228 -12.34356 -12.29146 -12.22708 -11.77109 -11.44418 -11.27221 -10.85858 -10.73430 -10.15087 -9.95060 -9.76528 -9.59787 -9.43894 -8.99286 -8.88318 -8.59829 -8.25012 -7.54237 -6.47833 -4.13669 0.93858 1.08871 1.57473 2.15557 3.02893 3.26483 3.27348 3.33762 3.58689 3.65954 4.30084 4.37320 4.44143 4.53391 4.59245 4.73339 4.82692 4.95482 5.02728 5.24119 5.32268 5.35296 5.38157 5.40752 5.48318 5.60358 5.65803 5.79045 5.81145 5.89674 5.92530 6.05957 6.15321 6.31486 6.37650 6.54284 6.68927 6.84554 6.99353 7.12901 7.43355 7.56279 7.69157 7.91701 7.93575 8.55052 8.87497 9.49374 10.58342 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.005248 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.925466 B = 5334.038026 C = 6229.552543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.054 4.054 3 C -0.168 4.168 4 C 0.097 3.903 5 N -0.472 5.472 6 C 0.118 3.882 7 C 0.100 3.900 8 N -0.580 5.580 9 C 0.093 3.907 10 C 0.576 3.424 11 O -0.506 6.506 12 C -0.222 4.222 13 C -0.052 4.052 14 C -0.209 4.209 15 C -0.053 4.053 16 C -0.216 4.216 17 C 0.202 3.798 18 O -0.186 6.186 19 C -0.391 4.391 20 H 0.105 0.895 21 C 0.070 3.930 22 N -0.871 5.871 23 Si 0.897 3.103 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.243 1.243 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.137 0.863 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.684 18.485 8.537 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.064 4.064 3 C -0.188 4.188 4 C -0.060 4.060 5 N -0.181 5.181 6 C -0.040 4.040 7 C 0.006 3.994 8 N -0.313 5.313 9 C -0.048 4.048 10 C 0.368 3.632 11 O -0.379 6.379 12 C -0.226 4.226 13 C -0.071 4.071 14 C -0.228 4.228 15 C -0.072 4.072 16 C -0.235 4.235 17 C 0.146 3.854 18 O -0.088 6.088 19 C -0.466 4.466 20 H 0.122 0.878 21 C -0.135 4.135 22 N -0.507 5.507 23 Si 0.722 3.278 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.167 1.167 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.154 0.846 31 H 0.174 0.826 32 H 0.175 0.825 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.155 0.845 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.280 17.471 8.618 19.945 hybrid contribution -1.271 -0.334 0.093 1.317 sum -5.551 17.137 8.711 20.009 Atomic orbital electron populations 1.20803 0.89975 1.03648 1.02862 1.20580 0.97222 0.92245 0.96318 1.21961 0.95471 0.98052 1.03336 1.22788 0.91640 0.96431 0.95150 1.67745 1.40509 0.98002 1.11794 1.23151 0.90718 0.96726 0.93455 1.18409 0.92149 0.85758 1.03039 1.45185 1.56054 1.18715 1.11334 1.21652 0.97142 1.01237 0.84816 1.18301 0.80805 0.82055 0.82045 1.90821 1.39088 1.25152 1.82880 1.18748 1.12268 0.92755 0.98874 1.21258 0.95889 0.93516 0.96392 1.20538 1.05571 0.98524 0.98212 1.20982 0.96002 0.92544 0.97654 1.21280 1.06415 0.96634 0.99208 1.18978 0.91521 0.84329 0.90587 1.83736 1.50358 1.11884 1.62861 1.20830 1.03259 0.86936 1.35542 0.87779 1.24485 0.98365 0.94572 0.96082 1.69634 1.36202 1.03685 1.41187 0.86255 0.81469 0.78324 0.81775 1.19856 1.20934 1.16654 0.90479 0.90820 0.90777 0.84566 0.82617 0.82492 0.92694 0.90245 0.91322 0.86119 0.87178 0.86747 0.84515 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.50 36.01 0.34 -0.73 16 2 C -0.05 -0.60 4.18 -104.13 -0.44 -1.03 16 3 C -0.17 -1.54 9.77 -39.47 -0.39 -1.92 16 4 C 0.10 0.99 11.17 -17.53 -0.20 0.79 16 5 N -0.47 -6.32 10.35 -13.08 -0.14 -6.46 16 6 C 0.12 1.71 9.38 -17.32 -0.16 1.54 16 7 C 0.10 1.37 2.78 -83.56 -0.23 1.14 16 8 N -0.58 -9.16 2.08 -121.88 -0.25 -9.41 16 9 C 0.09 1.20 9.93 59.85 0.59 1.79 16 10 C 0.58 11.82 7.20 -12.49 -0.09 11.73 16 11 O -0.51 -12.31 15.74 -12.19 -0.19 -12.51 16 12 C -0.22 -4.62 5.29 -104.81 -0.55 -5.17 16 13 C -0.05 -0.91 7.49 -39.20 -0.29 -1.20 16 14 C -0.21 -3.47 10.02 -39.61 -0.40 -3.87 16 15 C -0.05 -0.94 10.03 -39.53 -0.40 -1.34 16 16 C -0.22 -4.61 9.00 -39.44 -0.35 -4.97 16 17 C 0.20 4.79 6.54 -38.59 -0.25 4.54 16 18 O -0.19 -5.09 7.25 -16.65 -0.12 -5.22 16 19 C -0.39 -11.12 9.67 30.90 0.30 -10.82 16 20 H 0.10 2.99 6.16 -52.48 -0.32 2.67 16 21 C 0.07 2.00 5.49 -17.52 -0.10 1.90 16 22 N -0.87 -25.24 13.96 55.48 0.77 -24.47 16 23 Si 0.90 22.84 28.62 -169.99 -4.86 17.98 16 24 H -0.27 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.24 -6.51 7.11 56.52 0.40 -6.11 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 29 H 0.07 0.85 7.55 -51.93 -0.39 0.46 16 30 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.16 2.42 8.06 -52.49 -0.42 2.00 16 33 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 34 H 0.08 1.15 7.71 -51.93 -0.40 0.75 16 35 H 0.07 0.70 8.01 -51.93 -0.42 0.29 16 36 H 0.12 1.86 4.13 -52.49 -0.22 1.64 16 37 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.14 3.01 6.25 -52.49 -0.33 2.68 16 40 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 339.56 15.07 5.12 5.12 Total: -1.00 -33.12 339.56 -6.88 -40.00 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.59 Total: 2.58 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.61 Total: -7.61 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.39 Total: -40.34 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.31 Total: -17.72 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.86 Total: 17.98 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.12 -6.88 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766828330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.922 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds