Wall clock time and date at job start Fri Apr 10 2020 22:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38543 * 120.81443 * 2 1 4 4 C 1.38233 * 119.23646 * 180.02562 * 3 2 1 5 5 N 1.31887 * 120.92604 * 0.02562 * 4 3 2 6 6 C 1.31797 * 121.79617 * 359.66205 * 5 4 3 7 7 C 1.38909 * 120.65526 * 0.62737 * 6 5 4 8 8 N 1.39873 * 120.48485 * 179.67877 * 7 6 5 9 9 C 1.46506 * 119.99761 * 104.67829 * 8 7 6 10 10 C 1.34770 * 120.00312 * 284.39711 * 8 7 6 11 11 O 1.21607 * 120.00280 * 187.34151 * 10 8 7 12 12 C 1.47500 * 119.99964 * 7.34522 * 10 8 7 13 13 C 1.39678 * 120.20168 * 324.40690 * 12 10 8 14 14 C 1.37819 * 119.91963 * 179.97438 * 13 12 10 15 15 C 1.38575 * 120.32725 * 0.02562 * 14 13 12 16 16 C 1.38028 * 120.40438 * 359.97438 * 15 14 13 17 17 C 1.38835 * 120.07060 * 359.74199 * 16 15 14 18 18 O 1.35518 * 120.15841 * 180.27688 * 17 16 15 19 19 C 1.34812 * 117.00635 * 19.58992 * 18 17 16 20 20 H 1.08004 * 119.99338 * 8.25676 * 19 18 17 21 21 C 1.38697 * 120.00455 * 188.25836 * 19 18 17 22 22 N 1.31511 * 119.99995 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99789 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47379 * 90.00287 * 23 21 19 25 25 H 1.48502 * 109.47024 * 209.99940 * 23 21 19 26 26 H 1.48502 * 109.47170 * 330.00125 * 23 21 19 27 27 H 1.09004 * 109.47017 * 269.97857 * 1 2 3 28 28 H 1.09001 * 109.47541 * 29.97947 * 1 2 3 29 29 H 1.08998 * 109.46915 * 149.97917 * 1 2 3 30 30 H 1.07997 * 120.38428 * 359.97438 * 3 2 1 31 31 H 1.07997 * 119.53975 * 180.02562 * 4 3 2 32 32 H 1.07998 * 119.67117 * 180.33591 * 6 5 4 33 33 H 1.09008 * 109.47085 * 95.56479 * 9 8 7 34 34 H 1.08997 * 109.47368 * 215.56500 * 9 8 7 35 35 H 1.09004 * 109.46893 * 335.57082 * 9 8 7 36 36 H 1.08000 * 120.03852 * 359.97438 * 13 12 10 37 37 H 1.08004 * 119.83723 * 179.97438 * 14 13 12 38 38 H 1.08001 * 119.80018 * 179.97438 * 15 14 13 39 39 H 1.08002 * 119.96578 * 180.02562 * 16 15 14 40 40 H 0.96998 * 119.99997 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1899 0.0000 4 6 3.5985 1.1518 -0.0005 5 7 4.2449 0.0022 -0.0016 6 6 3.6089 -1.1521 0.0045 7 6 2.2205 -1.1958 -0.0008 8 7 1.5491 -2.4229 -0.0011 9 6 0.9107 -2.9089 1.2247 10 6 1.4847 -3.1555 -1.1304 11 8 0.7913 -4.1539 -1.1689 12 6 2.2552 -2.7466 -2.3198 13 6 2.4283 -1.3920 -2.6132 14 6 3.1498 -1.0163 -3.7258 15 6 3.7049 -1.9764 -4.5568 16 6 3.5421 -3.3187 -4.2796 17 6 2.8235 -3.7157 -3.1600 18 8 2.6673 -5.0331 -2.8831 19 6 3.5364 -5.8871 -3.4600 20 1 4.3905 -5.5056 -3.9998 21 6 3.3336 -7.2555 -3.3604 22 7 4.1812 -8.0886 -3.9237 23 14 1.8567 -7.9153 -2.4262 24 1 0.7086 -8.0638 -3.3563 25 1 2.1924 -9.2375 -1.8394 26 1 1.4948 -6.9692 -1.3403 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3634 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6964 2.1362 -0.0004 31 1 4.1566 2.0764 -0.0001 32 1 4.1727 -2.0732 0.0089 33 1 -0.1448 -2.6368 1.2171 34 1 1.0060 -3.9933 1.2787 35 1 1.3959 -2.4578 2.0904 36 1 1.9974 -0.6399 -1.9690 37 1 3.2825 0.0315 -3.9517 38 1 4.2683 -1.6725 -5.4266 39 1 3.9782 -4.0610 -4.9318 40 1 4.0396 -9.0456 -3.8537 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766828330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:15 Heat of formation + Delta-G solvation = 0.528633 kcal Electronic energy + Delta-G solvation = -26300.280891 eV Core-core repulsion = 22659.892619 eV Total energy + Delta-G solvation = -3640.388272 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.37432 -40.92537 -39.94690 -38.23638 -36.92687 -34.54807 -34.49807 -32.51032 -31.29511 -30.88074 -29.01835 -27.95000 -27.15890 -25.10215 -23.96358 -23.23793 -22.97473 -21.13132 -20.00790 -19.34091 -18.36647 -17.95076 -17.50921 -17.23335 -16.58672 -16.47839 -16.07348 -15.86890 -15.52248 -15.47557 -15.15529 -14.80690 -14.54492 -14.25587 -14.14224 -14.06673 -13.84306 -13.63303 -13.56569 -13.33586 -13.17819 -12.92139 -12.67584 -12.56633 -12.42252 -12.09918 -11.74841 -11.22831 -10.98376 -10.83690 -10.33091 -10.16509 -9.98624 -9.52923 -9.25696 -8.60055 -6.30009 -0.01591 0.02763 0.20182 0.55638 1.21758 1.26225 1.51842 1.63205 1.86632 2.24573 2.66831 2.75537 2.95237 3.03387 3.40794 3.60517 3.69247 3.83076 3.93343 4.12615 4.13613 4.26008 4.39491 4.42729 4.46753 4.49645 4.61810 4.69699 4.71662 4.74552 4.78464 4.95777 4.97554 5.18311 5.24963 5.28850 5.32558 5.39307 5.53230 5.56066 5.68732 5.78607 6.07125 6.25781 6.75914 6.98139 7.06619 7.52511 8.51278 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.005248 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.925466 B = 5334.038026 C = 6229.552543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.050 4.050 3 C -0.147 4.147 4 C 0.101 3.899 5 N -0.494 5.494 6 C 0.100 3.900 7 C 0.073 3.927 8 N -0.567 5.567 9 C 0.089 3.911 10 C 0.568 3.432 11 O -0.558 6.558 12 C -0.224 4.224 13 C -0.045 4.045 14 C -0.183 4.183 15 C -0.044 4.044 16 C -0.235 4.235 17 C 0.162 3.838 18 O -0.226 6.226 19 C -0.395 4.395 20 H 0.085 0.915 21 C 0.026 3.974 22 N -0.910 5.910 23 Si 0.953 3.047 24 H -0.271 1.271 25 H -0.261 1.261 26 H -0.271 1.271 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.047 0.953 30 H 0.182 0.818 31 H 0.193 0.807 32 H 0.128 0.872 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.154 0.846 39 H 0.118 0.882 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 24.132 9.342 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.059 4.059 3 C -0.167 4.167 4 C -0.056 4.056 5 N -0.204 5.204 6 C -0.057 4.057 7 C -0.020 4.020 8 N -0.297 5.297 9 C -0.051 4.051 10 C 0.360 3.640 11 O -0.436 6.436 12 C -0.228 4.228 13 C -0.063 4.063 14 C -0.201 4.201 15 C -0.062 4.062 16 C -0.254 4.254 17 C 0.110 3.890 18 O -0.131 6.131 19 C -0.471 4.471 20 H 0.102 0.898 21 C -0.174 4.174 22 N -0.550 5.550 23 Si 0.776 3.224 24 H -0.196 1.196 25 H -0.186 1.186 26 H -0.196 1.196 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.066 0.934 30 H 0.199 0.801 31 H 0.210 0.790 32 H 0.145 0.855 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.166 0.834 37 H 0.177 0.823 38 H 0.172 0.828 39 H 0.135 0.865 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.233 23.187 9.449 25.579 hybrid contribution -0.937 -1.495 -0.071 1.766 sum -6.171 21.692 9.378 24.424 Atomic orbital electron populations 1.20874 0.88517 1.03692 1.04142 1.20824 0.98237 0.91584 0.95297 1.22400 0.94989 0.98864 1.00398 1.23488 0.92694 0.96378 0.93003 1.67740 1.41330 0.98517 1.12770 1.22794 0.90910 0.96595 0.95443 1.18532 0.91972 0.85646 1.05821 1.45048 1.55064 1.19084 1.10536 1.21837 0.98570 1.00055 0.84660 1.18435 0.80351 0.81848 0.83332 1.90786 1.41460 1.27390 1.83997 1.19128 1.11295 0.93816 0.98597 1.21619 0.95441 0.92283 0.96941 1.21155 1.02239 1.00626 0.96119 1.21421 0.95201 0.90733 0.98813 1.21336 1.06922 0.98419 0.98721 1.19603 0.93324 0.83740 0.92291 1.83693 1.51255 1.13323 1.64844 1.20724 1.03665 0.87641 1.35112 0.89790 1.25046 1.00403 0.94816 0.97183 1.69679 1.37708 1.04068 1.43587 0.85462 0.79115 0.77895 0.79890 1.19636 1.18551 1.19607 0.88594 0.88019 0.93437 0.80094 0.79004 0.85460 0.90732 0.92715 0.88268 0.83353 0.82316 0.82789 0.86455 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.50 71.24 0.68 -0.93 16 2 C -0.05 -0.88 4.18 -19.55 -0.08 -0.96 16 3 C -0.15 -1.73 9.77 22.34 0.22 -1.51 16 4 C 0.10 1.50 11.17 84.68 0.95 2.45 16 5 N -0.49 -11.79 10.35 -195.30 -2.02 -13.82 16 6 C 0.10 2.79 9.38 84.86 0.80 3.59 16 7 C 0.07 1.86 2.78 38.26 0.11 1.97 16 8 N -0.57 -17.92 2.08 -657.77 -1.37 -19.28 16 9 C 0.09 2.30 9.93 127.77 1.27 3.57 16 10 C 0.57 24.25 7.20 86.69 0.62 24.87 16 11 O -0.56 -28.94 15.74 12.64 0.20 -28.74 16 12 C -0.22 -9.49 5.29 -19.99 -0.11 -9.60 16 13 C -0.04 -1.45 7.49 22.52 0.17 -1.28 16 14 C -0.18 -5.26 10.02 22.25 0.22 -5.04 16 15 C -0.04 -1.43 10.03 22.30 0.22 -1.20 16 16 C -0.23 -10.32 9.00 22.36 0.20 -10.12 16 17 C 0.16 8.11 6.54 22.91 0.15 8.26 16 18 O -0.23 -13.30 7.25 -3.32 -0.02 -13.32 16 19 C -0.40 -24.30 9.67 67.93 0.66 -23.64 16 20 H 0.08 5.28 6.16 -2.91 -0.02 5.26 16 21 C 0.03 1.57 5.49 84.85 0.47 2.03 16 22 N -0.91 -55.73 13.96 21.62 0.30 -55.43 16 23 Si 0.95 50.31 28.62 68.60 1.96 52.27 16 24 H -0.27 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.26 -12.57 7.11 99.48 0.71 -11.87 16 26 H -0.27 -15.43 7.11 99.48 0.71 -14.72 16 27 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.10 0.88 8.10 -2.39 -0.02 0.86 16 29 H 0.05 0.95 7.55 -2.39 -0.02 0.94 16 30 H 0.18 0.64 8.06 -2.91 -0.02 0.61 16 31 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 33 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.05 1.69 7.71 -2.39 -0.02 1.67 16 35 H 0.10 1.91 8.01 -2.38 -0.02 1.89 16 36 H 0.15 3.97 4.13 -2.91 -0.01 3.96 16 37 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 38 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 39 H 0.12 5.55 6.25 -2.91 -0.02 5.53 16 40 H 0.29 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -81.16 339.56 6.66 -74.50 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 1.07 Total: 11.35 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 6.54 Total: -7.54 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -3.09 Total: -88.53 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: 0.17 Total: -42.06 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 1.96 Total: 52.27 kcal Total: -81.16 6.66 -74.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766828330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.031 kcal (2) G-P(sol) polarization free energy of solvation -81.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds