Wall clock time and date at job start Fri Apr 10 2020 22:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38176 * 120.49656 * 2 1 4 4 N 1.31800 * 120.89126 * 180.02562 * 3 2 1 5 5 C 1.31822 * 122.05027 * 0.02562 * 4 3 2 6 6 C 1.38129 * 120.90242 * 359.97438 * 5 4 3 7 7 C 1.39793 * 120.50181 * 180.02562 * 2 1 3 8 8 C 1.48153 * 120.92186 * 359.97438 * 7 2 1 9 9 O 1.21516 * 120.00282 * 353.79055 * 8 7 2 10 10 N 1.34775 * 120.00033 * 173.78906 * 8 7 2 11 11 C 1.46505 * 120.00174 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.46883 * 179.97438 * 11 10 8 13 13 C 1.38297 * 119.93200 * 269.72288 * 12 11 10 14 14 C 1.38100 * 120.06836 * 179.73340 * 13 12 11 15 15 C 1.38878 * 119.93155 * 0.56198 * 14 13 12 16 16 O 1.35748 * 120.07084 * 179.68220 * 15 14 13 17 17 C 1.34832 * 117.00287 * 185.68633 * 16 15 14 18 18 H 1.08002 * 119.99304 * 354.88649 * 17 16 15 19 19 C 1.38647 * 120.00092 * 174.88076 * 17 16 15 20 20 N 1.31559 * 120.00332 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47103 * 89.99918 * 21 19 17 23 23 H 1.48506 * 109.47152 * 209.99710 * 21 19 17 24 24 H 1.48499 * 109.47304 * 330.00295 * 21 19 17 25 25 C 1.38885 * 119.85956 * 359.71587 * 15 14 13 26 26 C 1.38096 * 119.92869 * 359.97438 * 25 15 14 27 27 H 1.08996 * 109.47177 * 263.23908 * 1 2 3 28 28 H 1.08993 * 109.46888 * 23.24465 * 1 2 3 29 29 H 1.09003 * 109.46561 * 143.23821 * 1 2 3 30 30 H 1.07994 * 119.55225 * 0.04408 * 3 2 1 31 31 H 1.07999 * 119.55238 * 179.97438 * 5 4 3 32 32 H 1.08000 * 120.50445 * 180.02562 * 6 5 4 33 33 H 0.97003 * 120.00007 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.46711 * 299.99680 * 11 10 8 35 35 H 1.09002 * 109.46836 * 59.99758 * 11 10 8 36 36 H 1.07999 * 119.96271 * 359.97438 * 13 12 11 37 37 H 1.08005 * 120.03246 * 180.27499 * 14 13 12 38 38 H 0.97000 * 120.00492 * 180.02562 * 20 19 17 39 39 H 1.07999 * 120.03357 * 179.97438 * 25 15 14 40 40 H 1.08000 * 119.96320 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2083 1.1906 0.0000 4 7 3.5263 1.1997 -0.0005 5 6 4.2335 0.0872 -0.0015 6 6 3.6138 -1.1473 -0.0016 7 6 2.2166 -1.2045 -0.0005 8 6 1.5080 -2.5055 -0.0006 9 8 0.2986 -2.5388 0.1137 10 7 2.2045 -3.6523 -0.1273 11 6 1.5037 -4.9389 -0.1279 12 6 2.5038 -6.0555 -0.2828 13 6 2.8431 -6.5079 -1.5449 14 6 3.7634 -7.5272 -1.6903 15 6 4.3395 -8.1061 -0.5670 16 8 5.2396 -9.1127 -0.7065 17 6 5.6713 -9.7088 0.4233 18 1 5.3652 -9.3269 1.3861 19 6 6.5079 -10.8119 0.3489 20 7 6.8811 -11.2767 -0.8239 21 14 7.1054 -11.6381 1.9141 22 1 6.1476 -12.7022 2.3088 23 1 8.4427 -12.2388 1.6773 24 1 7.2007 -10.6302 3.0006 25 6 3.9924 -7.6535 0.6993 26 6 3.0763 -6.6294 0.8377 27 1 -0.3633 -0.1210 1.0205 28 1 -0.3633 0.9442 -0.4056 29 1 -0.3632 -0.8233 -0.6151 30 1 1.6691 2.1263 0.0007 31 1 5.3121 0.1417 -0.0023 32 1 4.1996 -2.0547 -0.0020 33 1 3.1699 -3.6259 -0.2182 34 1 0.9660 -5.0600 0.8124 35 1 0.7968 -4.9671 -0.9571 36 1 2.3908 -6.0608 -2.4178 37 1 4.0313 -7.8771 -2.6764 38 1 7.4661 -12.0487 -0.8759 39 1 4.4384 -8.1019 1.5747 40 1 2.8062 -6.2767 1.8221 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771311885.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:18 Heat of formation + Delta-G solvation = -4.249581 kcal Electronic energy + Delta-G solvation = -23843.080117 eV Core-core repulsion = 20202.484646 eV Total energy + Delta-G solvation = -3640.595471 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.96499 -39.44571 -38.93099 -36.95892 -34.79997 -33.63382 -32.61928 -32.26424 -30.35793 -29.94726 -27.67909 -26.11742 -25.22118 -24.22793 -22.43449 -22.12458 -20.90541 -20.71630 -18.39323 -18.12016 -17.16452 -16.92912 -15.75778 -15.62832 -15.56315 -15.41832 -14.81670 -14.64971 -14.30987 -14.15575 -13.81010 -13.69851 -13.65766 -13.43985 -12.96986 -12.85599 -12.80653 -12.61337 -12.14144 -11.84466 -11.73929 -11.46101 -11.02164 -10.86872 -10.76500 -10.52840 -10.40416 -10.12487 -9.58239 -9.49084 -9.28736 -9.07485 -8.96008 -8.35867 -7.39987 -6.57945 -4.17025 0.44644 0.75751 1.97039 2.06161 2.71588 3.03102 3.06189 3.11041 3.15491 3.54384 3.86145 4.09650 4.32134 4.41811 4.49154 4.52414 4.68656 4.95842 5.04856 5.10080 5.15968 5.32411 5.33014 5.39421 5.51735 5.53500 5.58383 5.72035 5.77084 5.81497 6.05678 6.09662 6.27631 6.30445 6.36148 6.52831 6.73251 6.88928 7.07005 7.19645 7.28992 7.39494 7.58745 7.64551 7.86465 8.01951 8.87263 9.54510 10.59390 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.023276 B = 0.002388 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.688928 B =11724.512854 C =12218.397074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 C 0.091 3.909 4 N -0.468 5.468 5 C 0.086 3.914 6 C -0.135 4.135 7 C -0.093 4.093 8 C 0.552 3.448 9 O -0.531 6.531 10 N -0.712 5.712 11 C 0.179 3.821 12 C -0.219 4.219 13 C -0.053 4.053 14 C -0.195 4.195 15 C 0.161 3.839 16 O -0.172 6.172 17 C -0.394 4.394 18 H 0.094 0.906 19 C 0.041 3.959 20 N -0.858 5.858 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.237 4.237 26 C -0.050 4.050 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.141 0.859 33 H 0.402 0.598 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.272 0.728 39 H 0.129 0.871 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.589 18.704 1.980 20.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.081 4.081 3 C -0.067 4.067 4 N -0.176 5.176 5 C -0.070 4.070 6 C -0.156 4.156 7 C -0.104 4.104 8 C 0.339 3.661 9 O -0.409 6.409 10 N -0.364 5.364 11 C 0.058 3.942 12 C -0.220 4.220 13 C -0.072 4.072 14 C -0.214 4.214 15 C 0.106 3.894 16 O -0.074 6.074 17 C -0.470 4.470 18 H 0.111 0.889 19 C -0.164 4.164 20 N -0.492 5.492 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.191 1.191 25 C -0.256 4.256 26 C -0.069 4.069 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.178 0.822 31 H 0.179 0.821 32 H 0.159 0.841 33 H 0.237 0.763 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.146 0.854 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.746 19.112 1.767 20.698 hybrid contribution 0.532 -1.333 0.800 1.643 sum -7.214 17.780 2.567 19.358 Atomic orbital electron populations 1.20973 0.89021 1.03343 1.03909 1.21136 0.98452 0.92459 0.96094 1.22746 0.89785 0.97380 0.96785 1.67545 1.08319 1.31870 1.09888 1.22738 1.00658 0.87191 0.96418 1.22421 0.93947 1.00409 0.98808 1.20324 0.93805 0.94052 1.02209 1.18194 0.87012 0.83624 0.77288 1.90728 1.13457 1.87124 1.49587 1.46313 1.11324 1.05802 1.72936 1.20037 0.92911 0.79278 1.01998 1.19171 1.06090 1.02979 0.93799 1.20531 0.95684 0.95132 0.95881 1.20217 1.02419 1.01495 0.97312 1.19447 0.88131 0.88700 0.93110 1.83978 1.48555 1.40527 1.34352 1.21362 1.29629 1.11572 0.84452 0.88883 1.25328 0.96353 0.95877 0.98884 1.70032 1.32323 1.23303 1.23554 0.85688 0.78432 0.79437 0.79761 1.19750 1.20146 1.19115 1.21161 1.04479 1.02262 0.97732 1.20641 0.94635 0.94575 0.97006 0.90358 0.91919 0.88622 0.82190 0.82059 0.84094 0.76263 0.91252 0.91222 0.86944 0.86325 0.91808 0.85374 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 8.82 36.01 0.32 -0.74 16 2 C -0.08 -0.79 5.93 -104.06 -0.62 -1.41 16 3 C 0.09 0.84 10.83 -17.59 -0.19 0.65 16 4 N -0.47 -4.85 10.33 -13.31 -0.14 -4.99 16 5 C 0.09 0.77 11.17 -17.60 -0.20 0.58 16 6 C -0.14 -1.23 9.60 -39.02 -0.37 -1.60 16 7 C -0.09 -1.01 5.91 -104.64 -0.62 -1.63 16 8 C 0.55 6.90 7.73 -12.19 -0.09 6.80 16 9 O -0.53 -7.86 13.55 5.35 0.07 -7.79 16 10 N -0.71 -8.32 5.51 -62.33 -0.34 -8.66 16 11 C 0.18 2.33 5.80 -5.19 -0.03 2.30 16 12 C -0.22 -3.31 5.25 -104.58 -0.55 -3.86 16 13 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 14 C -0.20 -3.79 9.99 -39.40 -0.39 -4.19 16 15 C 0.16 3.63 6.65 -39.11 -0.26 3.37 16 16 O -0.17 -4.66 9.76 0.05 0.00 -4.66 16 17 C -0.39 -10.51 9.49 30.88 0.29 -10.22 16 18 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -24.28 13.67 55.48 0.76 -23.52 16 21 Si 0.94 19.69 29.55 -169.99 -5.02 14.67 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 25 C -0.24 -4.74 9.17 -39.39 -0.36 -5.10 16 26 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.42 8.05 -51.93 -0.42 0.00 16 29 H 0.10 1.06 5.99 -51.93 -0.31 0.75 16 30 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.14 1.00 6.58 -52.49 -0.35 0.65 16 33 H 0.40 4.12 6.64 -40.82 -0.27 3.85 16 34 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.12 2.24 8.06 -52.48 -0.42 1.82 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.13 2.59 5.64 -52.49 -0.30 2.29 16 40 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -30.99 345.93 -7.82 -38.82 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.43 Total: 7.43 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -3.94 Total: -16.51 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.28 Total: -37.17 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.07 Total: -12.45 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.99 -7.82 -38.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771311885.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.567 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds