Wall clock time and date at job start Fri Apr 10 2020 22:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38176 * 120.49656 * 2 1 4 4 N 1.31800 * 120.89126 * 180.02562 * 3 2 1 5 5 C 1.31822 * 122.05027 * 0.02562 * 4 3 2 6 6 C 1.38129 * 120.90242 * 359.97438 * 5 4 3 7 7 C 1.39793 * 120.50181 * 180.02562 * 2 1 3 8 8 C 1.48153 * 120.92186 * 359.97438 * 7 2 1 9 9 O 1.21516 * 120.00282 * 353.79055 * 8 7 2 10 10 N 1.34775 * 120.00033 * 173.78906 * 8 7 2 11 11 C 1.46505 * 120.00174 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.46883 * 179.97438 * 11 10 8 13 13 C 1.38297 * 119.93200 * 269.72288 * 12 11 10 14 14 C 1.38100 * 120.06836 * 179.73340 * 13 12 11 15 15 C 1.38878 * 119.93155 * 0.56198 * 14 13 12 16 16 O 1.35748 * 120.07084 * 179.68220 * 15 14 13 17 17 C 1.34832 * 117.00287 * 185.68633 * 16 15 14 18 18 H 1.08002 * 119.99304 * 354.88649 * 17 16 15 19 19 C 1.38647 * 120.00092 * 174.88076 * 17 16 15 20 20 N 1.31559 * 120.00332 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47103 * 89.99918 * 21 19 17 23 23 H 1.48506 * 109.47152 * 209.99710 * 21 19 17 24 24 H 1.48499 * 109.47304 * 330.00295 * 21 19 17 25 25 C 1.38885 * 119.85956 * 359.71587 * 15 14 13 26 26 C 1.38096 * 119.92869 * 359.97438 * 25 15 14 27 27 H 1.08996 * 109.47177 * 263.23908 * 1 2 3 28 28 H 1.08993 * 109.46888 * 23.24465 * 1 2 3 29 29 H 1.09003 * 109.46561 * 143.23821 * 1 2 3 30 30 H 1.07994 * 119.55225 * 0.04408 * 3 2 1 31 31 H 1.07999 * 119.55238 * 179.97438 * 5 4 3 32 32 H 1.08000 * 120.50445 * 180.02562 * 6 5 4 33 33 H 0.97003 * 120.00007 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.46711 * 299.99680 * 11 10 8 35 35 H 1.09002 * 109.46836 * 59.99758 * 11 10 8 36 36 H 1.07999 * 119.96271 * 359.97438 * 13 12 11 37 37 H 1.08005 * 120.03246 * 180.27499 * 14 13 12 38 38 H 0.97000 * 120.00492 * 180.02562 * 20 19 17 39 39 H 1.07999 * 120.03357 * 179.97438 * 25 15 14 40 40 H 1.08000 * 119.96320 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2083 1.1906 0.0000 4 7 3.5263 1.1997 -0.0005 5 6 4.2335 0.0872 -0.0015 6 6 3.6138 -1.1473 -0.0016 7 6 2.2166 -1.2045 -0.0005 8 6 1.5080 -2.5055 -0.0006 9 8 0.2986 -2.5388 0.1137 10 7 2.2045 -3.6523 -0.1273 11 6 1.5037 -4.9389 -0.1279 12 6 2.5038 -6.0555 -0.2828 13 6 2.8431 -6.5079 -1.5449 14 6 3.7634 -7.5272 -1.6903 15 6 4.3395 -8.1061 -0.5670 16 8 5.2396 -9.1127 -0.7065 17 6 5.6713 -9.7088 0.4233 18 1 5.3652 -9.3269 1.3861 19 6 6.5079 -10.8119 0.3489 20 7 6.8811 -11.2767 -0.8239 21 14 7.1054 -11.6381 1.9141 22 1 6.1476 -12.7022 2.3088 23 1 8.4427 -12.2388 1.6773 24 1 7.2007 -10.6302 3.0006 25 6 3.9924 -7.6535 0.6993 26 6 3.0763 -6.6294 0.8377 27 1 -0.3633 -0.1210 1.0205 28 1 -0.3633 0.9442 -0.4056 29 1 -0.3632 -0.8233 -0.6151 30 1 1.6691 2.1263 0.0007 31 1 5.3121 0.1417 -0.0023 32 1 4.1996 -2.0547 -0.0020 33 1 3.1699 -3.6259 -0.2182 34 1 0.9660 -5.0600 0.8124 35 1 0.7968 -4.9671 -0.9571 36 1 2.3908 -6.0608 -2.4178 37 1 4.0313 -7.8771 -2.6764 38 1 7.4661 -12.0487 -0.8759 39 1 4.4384 -8.1019 1.5747 40 1 2.8062 -6.2767 1.8221 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771311885.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:17 Heat of formation + Delta-G solvation = -23.907583 kcal Electronic energy + Delta-G solvation = -23843.932552 eV Core-core repulsion = 20202.484646 eV Total energy + Delta-G solvation = -3641.447906 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.78101 -40.86922 -40.03612 -38.50522 -35.92557 -34.40152 -34.31772 -33.24384 -31.84845 -31.26072 -28.48066 -27.66265 -26.57868 -25.19769 -23.65909 -23.20940 -22.14815 -21.82204 -19.89525 -19.29534 -18.78280 -17.83647 -16.75159 -16.63095 -16.56360 -16.27379 -16.19739 -16.13555 -15.65994 -15.50712 -15.19706 -14.92636 -14.57542 -14.38694 -14.31261 -14.21178 -13.72287 -13.59995 -13.41424 -13.22110 -13.02198 -12.55162 -12.52593 -12.37257 -12.25955 -12.11481 -11.32276 -11.21297 -10.91597 -10.81889 -10.38132 -10.14860 -9.91186 -9.82149 -9.02733 -8.49004 -6.17258 -0.33697 0.07381 0.51846 0.56740 1.35895 1.43930 1.52697 1.81838 2.11040 2.16632 2.80494 2.83098 3.14622 3.47603 3.48798 3.55190 3.74622 3.82815 3.88310 3.97960 4.01742 4.16294 4.42759 4.43780 4.55513 4.61498 4.70287 4.77038 4.79588 4.81214 4.85445 5.02854 5.09450 5.13532 5.25334 5.27824 5.44642 5.51479 5.63341 5.68391 5.73115 6.00734 6.14605 6.44037 6.89704 6.95967 7.07234 7.74948 8.73740 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.023276 B = 0.002388 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.688928 B =11724.512854 C =12218.397074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.088 4.088 3 C 0.089 3.911 4 N -0.486 5.486 5 C 0.082 3.918 6 C -0.132 4.132 7 C -0.110 4.110 8 C 0.555 3.445 9 O -0.556 6.556 10 N -0.707 5.707 11 C 0.185 3.815 12 C -0.184 4.184 13 C -0.043 4.043 14 C -0.205 4.205 15 C 0.123 3.877 16 O -0.229 6.229 17 C -0.413 4.413 18 H 0.104 0.896 19 C -0.021 4.021 20 N -0.919 5.919 21 Si 1.017 2.983 22 H -0.265 1.265 23 H -0.272 1.272 24 H -0.251 1.251 25 C -0.243 4.243 26 C -0.044 4.044 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.185 0.815 31 H 0.186 0.814 32 H 0.160 0.840 33 H 0.410 0.590 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.147 0.853 37 H 0.115 0.885 38 H 0.273 0.727 39 H 0.120 0.880 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.752 21.274 3.217 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.091 4.091 3 C -0.068 4.068 4 N -0.195 5.195 5 C -0.074 4.074 6 C -0.152 4.152 7 C -0.121 4.121 8 C 0.342 3.658 9 O -0.436 6.436 10 N -0.358 5.358 11 C 0.063 3.937 12 C -0.185 4.185 13 C -0.061 4.061 14 C -0.224 4.224 15 C 0.072 3.928 16 O -0.135 6.135 17 C -0.489 4.489 18 H 0.121 0.879 19 C -0.219 4.219 20 N -0.556 5.556 21 Si 0.837 3.163 22 H -0.190 1.190 23 H -0.197 1.197 24 H -0.175 1.175 25 C -0.263 4.263 26 C -0.063 4.063 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.202 0.798 31 H 0.203 0.797 32 H 0.177 0.823 33 H 0.247 0.753 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.165 0.835 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.937 21.741 3.009 23.698 hybrid contribution 0.624 -1.769 0.354 1.909 sum -8.313 19.971 3.363 21.892 Atomic orbital electron populations 1.20910 0.88629 1.03845 1.03363 1.21310 0.98884 0.92643 0.96249 1.23123 0.89645 0.98075 0.95940 1.67604 1.08887 1.32628 1.10392 1.23185 1.01863 0.86823 0.95544 1.22612 0.93315 1.01328 0.97975 1.20324 0.94633 0.93423 1.03744 1.18390 0.86698 0.84145 0.76533 1.90728 1.14619 1.87513 1.50759 1.46102 1.11706 1.05155 1.72885 1.19953 0.92153 0.78820 1.02821 1.19467 1.04126 1.01979 0.92976 1.20883 0.94036 0.93531 0.97674 1.20448 1.03085 1.02322 0.96528 1.20007 0.88847 0.88744 0.95194 1.83949 1.51520 1.43074 1.34916 1.21829 1.29932 1.12092 0.85059 0.87857 1.26571 0.96427 0.96387 1.02552 1.70175 1.34555 1.24682 1.26233 0.84602 0.77840 0.78436 0.75472 1.18968 1.19712 1.17497 1.21246 1.05304 1.03217 0.96499 1.20944 0.93163 0.93126 0.99060 0.90767 0.89463 0.90659 0.79794 0.79678 0.82255 0.75266 0.90640 0.90415 0.83489 0.86719 0.91794 0.86189 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 8.82 71.24 0.63 -1.21 16 2 C -0.09 -1.60 5.93 -19.50 -0.12 -1.71 16 3 C 0.09 1.44 10.83 84.68 0.92 2.36 16 4 N -0.49 -8.91 10.33 -196.01 -2.03 -10.93 16 5 C 0.08 1.25 11.17 84.67 0.95 2.19 16 6 C -0.13 -2.03 9.60 22.63 0.22 -1.81 16 7 C -0.11 -2.14 5.91 -19.88 -0.12 -2.26 16 8 C 0.55 12.46 7.73 86.88 0.67 13.13 16 9 O -0.56 -15.39 13.55 -3.77 -0.05 -15.44 16 10 N -0.71 -14.06 5.51 -469.40 -2.58 -16.65 16 11 C 0.18 4.07 5.80 85.63 0.50 4.57 16 12 C -0.18 -4.94 5.25 -19.84 -0.10 -5.04 16 13 C -0.04 -1.25 9.69 22.25 0.22 -1.04 16 14 C -0.20 -7.93 9.99 22.39 0.22 -7.71 16 15 C 0.12 5.70 6.65 22.58 0.15 5.85 16 16 O -0.23 -13.13 9.76 -22.74 -0.22 -13.35 16 17 C -0.41 -23.07 9.49 67.92 0.64 -22.42 16 18 H 0.10 5.25 5.21 -2.91 -0.02 5.23 16 19 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 20 N -0.92 -54.92 13.67 21.61 0.30 -54.62 16 21 Si 1.02 41.39 29.55 68.60 2.03 43.41 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 24 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 25 C -0.24 -9.65 9.17 22.39 0.21 -9.45 16 26 C -0.04 -1.34 9.69 22.25 0.22 -1.13 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 0.96 8.05 -2.39 -0.02 0.94 16 29 H 0.07 1.59 5.99 -2.39 -0.01 1.57 16 30 H 0.19 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.16 1.73 6.58 -2.91 -0.02 1.71 16 33 H 0.41 6.90 6.64 -92.71 -0.62 6.28 16 34 H 0.08 1.67 8.08 -2.39 -0.02 1.65 16 35 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 36 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.12 4.90 5.64 -2.91 -0.02 4.88 16 40 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -71.75 345.93 3.58 -68.17 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.47 Total: 25.80 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 5.66 Total: -26.39 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -4.31 Total: -82.20 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.27 Total: -28.79 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -71.75 3.58 -68.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771311885.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.266 kcal (2) G-P(sol) polarization free energy of solvation -71.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds