Wall clock time and date at job start Fri Apr 10 2020 22:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38231 * 119.62074 * 2 1 4 4 C 1.38618 * 119.16141 * 180.02562 * 3 2 1 5 5 C 1.38677 * 118.42127 * 0.25734 * 4 3 2 6 6 S 1.76200 * 120.41543 * 179.74923 * 5 4 3 7 7 O 1.42103 * 106.39991 * 203.53842 * 6 5 4 8 8 O 1.42098 * 106.40407 * 336.46075 * 6 5 4 9 9 N 1.65600 * 107.21706 * 90.00160 * 6 5 4 10 10 C 1.46498 * 120.00304 * 89.99672 * 9 6 5 11 11 C 1.50700 * 109.47191 * 94.33662 * 10 9 6 12 12 H 1.08003 * 120.00187 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00203 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99798 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00093 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46925 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47518 * 119.99939 * 15 13 11 18 18 H 1.48503 * 109.46867 * 240.00103 * 15 13 11 19 19 C 1.46502 * 119.99703 * 269.99527 * 9 6 5 20 20 C 1.53004 * 109.46954 * 93.15490 * 19 9 6 21 21 C 1.52996 * 109.47070 * 63.05665 * 20 19 9 22 22 C 1.52999 * 109.46990 * 183.05462 * 20 19 9 23 23 C 1.38178 * 119.16273 * 359.47548 * 5 4 3 24 24 N 1.31858 * 119.61623 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47473 * 89.99507 * 1 2 3 26 26 H 1.08997 * 109.47542 * 209.99474 * 1 2 3 27 27 H 1.08999 * 109.47162 * 329.99553 * 1 2 3 28 28 H 1.07996 * 120.41502 * 0.02665 * 3 2 1 29 29 H 1.08001 * 120.78639 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47247 * 214.33786 * 10 9 6 31 31 H 1.09001 * 109.47132 * 334.33738 * 10 9 6 32 32 H 0.97005 * 119.99952 * 180.02562 * 14 13 11 33 33 H 1.09004 * 109.46911 * 213.14985 * 19 9 6 34 34 H 1.08993 * 109.47375 * 333.15048 * 19 9 6 35 35 H 1.08995 * 109.47011 * 303.05364 * 20 19 9 36 36 H 1.09000 * 109.47396 * 292.74727 * 21 20 19 37 37 H 1.09001 * 109.47383 * 52.75028 * 21 20 19 38 38 H 1.09001 * 109.47424 * 172.75177 * 21 20 19 39 39 H 1.08999 * 109.46918 * 59.99601 * 22 20 19 40 40 H 1.08996 * 109.47076 * 179.97438 * 22 20 19 41 41 H 1.09007 * 109.47207 * 300.00196 * 22 20 19 42 42 H 1.08003 * 119.62043 * 180.25173 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5763 1.1905 -0.0005 5 6 4.2266 -0.0343 -0.0065 6 16 5.9869 -0.1097 -0.0142 7 8 6.3320 -1.3741 -0.5634 8 8 6.4391 1.1231 -0.5572 9 7 6.4833 -0.1349 1.5655 10 6 6.6485 -1.4136 2.2611 11 6 8.0856 -1.8567 2.1633 12 1 8.8042 -1.2466 1.6361 13 6 8.4832 -3.0409 2.7469 14 7 7.6081 -3.7841 3.3885 15 14 10.2647 -3.5898 2.6263 16 1 11.0413 -2.5844 1.8574 17 1 10.8362 -3.7195 3.9907 18 1 10.3326 -4.9020 1.9343 19 6 6.7573 1.1215 2.2673 20 6 5.4988 1.5760 3.0094 21 6 5.1329 0.5405 4.0746 22 6 5.7616 2.9261 3.6796 23 6 3.4766 -1.1948 -0.0007 24 7 2.1586 -1.1463 0.0005 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5139 28 1 1.6508 2.1373 0.0004 29 1 4.1366 2.1139 -0.0010 30 1 6.3755 -1.2947 3.3097 31 1 6.0050 -2.1634 1.8009 32 1 7.8879 -4.6171 3.7994 33 1 7.5657 0.9694 2.9825 34 1 7.0492 1.8845 1.5458 35 1 4.6759 1.6758 2.3017 36 1 4.8212 -0.3847 3.5899 37 1 6.0003 0.3459 4.7053 38 1 4.3164 0.9225 4.6874 39 1 6.0224 3.6638 2.9207 40 1 4.8650 3.2501 4.2079 41 1 6.5847 2.8263 4.3873 42 1 3.9754 -2.1528 -0.0012 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774880069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:20 Heat of formation + Delta-G solvation = -49.869209 kcal Electronic energy + Delta-G solvation = -25127.651359 eV Core-core repulsion = 21620.521624 eV Total energy + Delta-G solvation = -3507.129735 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.21912 -37.28296 -36.66839 -35.26005 -33.71388 -33.24773 -32.41884 -32.11421 -28.00350 -27.71220 -26.79445 -24.97023 -23.80876 -22.52873 -22.20783 -20.13406 -18.59897 -17.56015 -16.83699 -16.60823 -16.41972 -15.79833 -15.55838 -14.64079 -14.49569 -14.41042 -14.31757 -13.95344 -13.41088 -13.31064 -12.82716 -12.60649 -12.54045 -12.42053 -12.33111 -12.18173 -11.82451 -11.58037 -11.49998 -11.27289 -11.21791 -11.19678 -10.91933 -10.88248 -10.59700 -10.43435 -10.22185 -10.06385 -9.92041 -9.71324 -9.50667 -9.27093 -8.43696 -8.05644 -6.06405 -4.09848 0.57864 0.99098 1.16252 3.31498 3.38374 3.39816 3.45117 3.72716 4.15854 4.29646 4.45097 4.49569 4.62901 4.85832 5.05688 5.10785 5.19725 5.23482 5.28644 5.31471 5.33187 5.40744 5.61820 5.65005 5.70869 5.84907 5.87120 5.89536 5.94067 6.07112 6.14246 6.27187 6.31607 6.50756 6.53443 6.59320 6.75382 7.21932 7.36422 7.57420 7.80211 7.90998 8.19769 8.92475 9.55191 11.02087 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.014516 B = 0.005251 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.432395 B = 5330.606154 C = 5875.306655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.169 3.831 3 C -0.199 4.199 4 C 0.026 3.974 5 C -0.735 4.735 6 S 2.688 3.312 7 O -0.938 6.938 8 O -0.974 6.974 9 N -0.976 5.976 10 C 0.248 3.752 11 C -0.527 4.527 12 H 0.061 0.939 13 C 0.063 3.937 14 N -0.895 5.895 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.282 1.282 19 C 0.124 3.876 20 C -0.119 4.119 21 C -0.144 4.144 22 C -0.144 4.144 23 C 0.209 3.791 24 N -0.498 5.498 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.263 0.737 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.041 0.959 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.816 12.132 -2.024 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.031 3.969 3 C -0.220 4.220 4 C -0.001 4.001 5 C -0.820 4.820 6 S 2.774 3.226 7 O -0.928 6.928 8 O -0.964 6.964 9 N -0.815 5.815 10 C 0.127 3.873 11 C -0.566 4.566 12 H 0.080 0.920 13 C -0.139 4.139 14 N -0.534 5.534 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.208 1.208 19 C -0.002 4.002 20 C -0.139 4.139 21 C -0.201 4.201 22 C -0.202 4.202 23 C 0.051 3.949 24 N -0.208 5.208 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.158 0.842 29 H 0.166 0.834 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -11.827 11.148 -2.652 16.467 hybrid contribution 0.692 0.365 0.342 0.854 sum -11.134 11.513 -2.310 16.182 Atomic orbital electron populations 1.20825 0.88550 1.03897 1.03411 1.21643 0.97247 0.88675 0.89314 1.21987 0.94962 0.99435 1.05586 1.21290 0.94668 0.96776 0.87370 1.32521 1.30877 1.00289 1.18299 1.02265 0.73121 0.73548 0.73694 1.93613 1.81122 1.41701 1.76365 1.93492 1.79419 1.46050 1.77487 1.57396 1.79575 1.13708 1.30812 1.19328 0.97438 0.76842 0.93740 1.21515 0.94585 1.05945 1.34574 0.92028 1.24905 0.97800 0.96154 0.95041 1.69924 1.33945 1.13813 1.35736 0.86483 0.84758 0.78835 0.77628 1.19627 1.21049 1.20831 1.21368 0.96949 0.84909 0.96975 1.21660 0.98603 0.95528 0.98121 1.21910 1.01024 0.99058 0.98153 1.21774 1.01578 0.96280 1.00531 1.22670 0.89074 0.97564 0.85599 1.67702 1.09894 1.28939 1.14264 0.89896 0.89976 0.90372 0.84212 0.83432 0.93212 0.94585 0.92749 0.89084 0.90283 0.92213 0.91660 0.91987 0.93950 0.92725 0.92955 0.92287 0.80776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.17 36.01 0.37 -0.57 16 2 C 0.17 2.14 6.78 -82.58 -0.56 1.58 16 3 C -0.20 -2.32 9.74 -39.44 -0.38 -2.70 16 4 C 0.03 0.35 8.34 -39.28 -0.33 0.02 16 5 C -0.74 -12.06 5.99 -39.44 -0.24 -12.29 16 6 S 2.69 52.22 5.66 -107.50 -0.61 51.62 16 7 O -0.94 -21.64 16.30 -57.17 -0.93 -22.57 16 8 O -0.97 -19.26 15.93 -57.17 -0.91 -20.18 16 9 N -0.98 -19.23 2.63 -115.66 -0.30 -19.53 16 10 C 0.25 5.87 4.28 -5.19 -0.02 5.85 16 11 C -0.53 -14.23 9.39 -34.44 -0.32 -14.55 16 12 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 14 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 15 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C 0.12 2.05 5.21 -4.04 -0.02 2.03 16 20 C -0.12 -1.65 3.14 -90.62 -0.28 -1.93 16 21 C -0.14 -2.17 7.77 37.16 0.29 -1.88 16 22 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 23 C 0.21 3.52 10.69 -17.55 -0.19 3.33 16 24 N -0.50 -7.80 10.27 -9.47 -0.10 -7.90 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.15 1.74 7.71 -52.49 -0.40 1.34 16 30 H 0.05 1.18 5.46 -51.93 -0.28 0.89 16 31 H 0.04 0.91 7.63 -51.93 -0.40 0.51 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.09 1.54 8.10 -51.93 -0.42 1.12 16 34 H 0.08 1.22 6.95 -51.93 -0.36 0.86 16 35 H 0.06 0.80 6.78 -51.93 -0.35 0.44 16 36 H 0.06 1.11 6.26 -51.93 -0.33 0.78 16 37 H 0.06 0.98 7.97 -51.93 -0.41 0.56 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.18 2.94 7.64 -52.48 -0.40 2.54 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -32.49 356.68 -9.49 -41.99 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.28 Total: 0.23 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -1.45 Total: -20.75 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.34 Total: -52.17 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -1.84 Total: -42.74 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 52.22 SS G_CDS: -0.61 Total: 51.62 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.49 -9.49 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774880069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.884 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds