Wall clock time and date at job start Fri Apr 10 2020 22:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00091 * 2 1 4 4 H 1.48503 * 109.47217 * 240.00255 * 3 2 1 5 5 H 1.48506 * 109.47181 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47210 * 120.00108 * 3 2 1 7 7 C 1.37881 * 119.99509 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99670 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00530 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47167 * 179.97438 * 9 7 2 11 11 O 1.42904 * 109.47296 * 179.97438 * 10 9 7 12 12 C 1.35905 * 117.00284 * 180.02562 * 11 10 9 13 13 C 1.38879 * 119.97465 * 359.73534 * 12 11 10 14 14 C 1.38264 * 120.26392 * 179.72060 * 13 12 11 15 15 C 1.37972 * 120.22143 * 0.55099 * 14 13 12 16 16 C 1.39722 * 119.94945 * 359.72001 * 15 14 13 17 17 C 1.47440 * 120.13333 * 179.97438 * 16 15 14 18 18 N 1.29853 * 119.99886 * 0.02562 * 17 16 15 19 19 N 1.40101 * 120.00001 * 174.95724 * 18 17 16 20 20 C 1.35939 * 119.62918 * 5.33670 * 19 18 17 21 21 C 1.35392 * 120.67086 * 179.97438 * 20 19 18 22 22 C 1.40182 * 119.93145 * 0.02562 * 21 20 19 23 23 C 1.36497 * 119.27420 * 0.02562 * 22 21 20 24 24 C 1.34660 * 119.63155 * 185.06614 * 19 18 17 25 25 O 1.22086 * 119.97332 * 359.97438 * 24 19 18 26 26 C 1.38410 * 119.97586 * 180.02562 * 12 11 10 27 27 H 0.96996 * 120.00044 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47098 * 59.99909 * 9 7 2 29 29 H 1.08999 * 109.47262 * 300.00615 * 9 7 2 30 30 H 1.09001 * 109.46764 * 60.00547 * 10 9 7 31 31 H 1.08990 * 109.47606 * 300.00378 * 10 9 7 32 32 H 1.07995 * 119.86911 * 359.97438 * 13 12 11 33 33 H 1.08006 * 119.89086 * 180.26998 * 14 13 12 34 34 H 1.08003 * 120.02929 * 179.74396 * 15 14 13 35 35 H 1.07997 * 119.99648 * 180.02562 * 17 16 15 36 36 H 1.08002 * 119.66749 * 0.02562 * 20 19 18 37 37 H 1.08007 * 120.03299 * 180.02562 * 21 20 19 38 38 H 1.07997 * 120.35969 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.32962 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.11018 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 8 1.5307 -4.8997 -0.0012 12 6 2.2708 -6.0395 -0.0017 13 6 3.6577 -5.9662 -0.0083 14 6 4.4166 -7.1220 -0.0029 15 6 3.8012 -8.3569 -0.0025 16 6 2.4065 -8.4412 -0.0016 17 6 1.7447 -9.7587 -0.0017 18 7 2.4581 -10.8437 -0.0022 19 7 1.8332 -12.0931 0.1043 20 6 0.4759 -12.1683 0.0981 21 6 -0.1499 -13.3646 0.1993 22 6 0.6040 -14.5411 0.3125 23 6 1.9667 -14.4625 0.3195 24 6 2.5838 -13.2064 0.2062 25 8 3.8018 -13.1231 0.2049 26 6 1.6419 -7.2725 -0.0017 27 1 -0.4850 0.8400 -0.0004 28 1 0.6240 -2.5568 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 2.8724 -3.6047 0.8878 31 1 2.8712 -3.6040 -0.8921 32 1 4.1454 -5.0027 -0.0134 33 1 5.4947 -7.0580 -0.0037 34 1 4.3970 -9.2577 -0.0025 35 1 0.6665 -9.8213 -0.0014 36 1 -0.1092 -11.2647 0.0107 37 1 -1.2289 -13.4125 0.1929 38 1 0.1119 -15.4990 0.3940 39 1 2.5641 -15.3579 0.4063 40 1 0.5635 -7.3306 -0.0017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776793319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:22 Heat of formation + Delta-G solvation = 36.142364 kcal Electronic energy + Delta-G solvation = -23203.783467 eV Core-core repulsion = 19564.939522 eV Total energy + Delta-G solvation = -3638.843945 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.61586 -39.93437 -37.95790 -37.25713 -36.29313 -33.47487 -33.00400 -31.14934 -30.47474 -30.11767 -29.13558 -25.82427 -25.07612 -23.86729 -22.98733 -22.49041 -21.34031 -20.15689 -18.85855 -17.83551 -17.54849 -16.66033 -16.34949 -16.25184 -15.85459 -15.70786 -15.45073 -15.30591 -14.78441 -14.49931 -14.36779 -13.56794 -13.50060 -13.13261 -12.88156 -12.78520 -12.49632 -12.36648 -12.09183 -11.72402 -11.53858 -11.51283 -10.94118 -10.91540 -10.74887 -10.56306 -10.44937 -10.30357 -9.94444 -9.73185 -9.37644 -8.97206 -8.50049 -8.31549 -8.00018 -6.15370 -4.20361 -0.02891 0.72068 1.44395 1.48755 1.65587 2.07553 3.25482 3.30076 3.31281 3.32287 3.49323 3.77711 3.81318 4.21270 4.23650 4.33134 4.40208 4.57469 4.72932 4.82484 4.87273 5.13144 5.16820 5.21192 5.25528 5.40938 5.51479 5.63386 5.76344 5.83678 5.90055 5.93580 5.94011 6.28831 6.37049 6.41785 6.53728 6.59469 6.72306 7.00523 7.41603 7.56667 7.72152 7.81791 7.93989 8.17379 8.84893 9.44296 10.96048 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.036949 B = 0.001917 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.621784 B =14600.723819 C =15332.865979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.064 3.936 11 O -0.314 6.314 12 C 0.139 3.861 13 C -0.183 4.183 14 C -0.087 4.087 15 C -0.118 4.118 16 C -0.041 4.041 17 C 0.153 3.847 18 N -0.252 5.252 19 N -0.357 5.357 20 C 0.078 3.922 21 C -0.210 4.210 22 C -0.022 4.022 23 C -0.230 4.230 24 C 0.533 3.467 25 O -0.520 6.520 26 C -0.124 4.124 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.165 0.835 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.156 0.844 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 -25.936 0.293 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.010 4.010 11 O -0.227 6.227 12 C 0.092 3.908 13 C -0.203 4.203 14 C -0.105 4.105 15 C -0.139 4.139 16 C -0.043 4.043 17 C -0.055 4.055 18 N -0.052 5.052 19 N -0.156 5.156 20 C -0.049 4.049 21 C -0.234 4.234 22 C -0.043 4.043 23 C -0.253 4.253 24 C 0.334 3.666 25 O -0.397 6.397 26 C -0.145 4.145 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.182 0.818 37 H 0.167 0.833 38 H 0.158 0.842 39 H 0.174 0.826 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.389 -26.249 0.253 26.253 hybrid contribution -0.445 1.232 -0.026 1.310 sum -0.056 -25.017 0.227 25.018 Atomic orbital electron populations 1.69958 1.06103 1.27154 1.49481 1.24987 0.94919 0.99407 0.94834 0.86539 0.79501 0.82541 0.78744 1.20074 1.21099 1.20080 1.20923 0.93029 0.90184 1.52551 0.92380 1.19122 0.94158 0.88946 0.98924 1.23387 0.97194 0.80609 0.99818 1.86188 1.36397 1.13100 1.86989 1.18944 0.90049 0.87543 0.94244 1.21659 0.93210 1.00240 1.05212 1.20927 1.00033 0.91507 0.98018 1.21274 0.93303 0.98355 1.00942 1.17892 0.93208 0.88609 1.04629 1.24851 0.98275 0.91189 0.91186 1.75697 1.23902 0.89688 1.15962 1.46739 1.04680 1.06305 1.57907 1.22412 0.84656 1.01242 0.96562 1.20699 1.01253 0.90832 1.10596 1.21551 0.93734 0.99034 0.89988 1.22199 0.95767 0.96634 1.10707 1.16981 0.87586 0.82584 0.79481 1.90985 1.12566 1.85667 1.50523 1.20396 1.00211 0.88809 1.05065 0.92608 0.95355 0.95346 0.92945 0.92932 0.84645 0.85357 0.84864 0.85277 0.81818 0.83263 0.84218 0.82611 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.53 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.64 5.34 -27.89 -0.15 0.49 16 10 C 0.06 1.27 4.68 37.15 0.17 1.45 16 11 O -0.31 -5.85 10.13 -19.44 -0.20 -6.05 16 12 C 0.14 2.14 6.68 -39.28 -0.26 1.88 16 13 C -0.18 -2.57 9.03 -39.33 -0.36 -2.92 16 14 C -0.09 -1.06 10.02 -39.67 -0.40 -1.46 16 15 C -0.12 -1.46 9.58 -39.12 -0.37 -1.84 16 16 C -0.04 -0.48 5.87 -105.06 -0.62 -1.09 16 17 C 0.15 1.51 10.19 -14.64 -0.15 1.36 16 18 N -0.25 -3.13 10.12 32.16 0.33 -2.81 16 19 N -0.36 -4.00 3.58 -14.99 -0.05 -4.06 16 20 C 0.08 0.54 9.99 -16.75 -0.17 0.37 16 21 C -0.21 -1.08 10.01 -39.87 -0.40 -1.48 16 22 C -0.02 -0.12 10.10 -39.48 -0.40 -0.52 16 23 C -0.23 -1.98 9.99 -39.39 -0.39 -2.37 16 24 C 0.53 6.86 7.52 -15.50 -0.12 6.74 16 25 O -0.52 -8.92 17.42 4.84 0.08 -8.84 16 26 C -0.12 -1.56 9.73 -38.99 -0.38 -1.94 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.99 7.67 -51.93 -0.40 0.59 16 31 H 0.05 0.99 7.64 -51.93 -0.40 0.60 16 32 H 0.14 1.84 6.28 -52.49 -0.33 1.51 16 33 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 34 H 0.13 1.66 7.55 -52.48 -0.40 1.26 16 35 H 0.13 0.76 5.74 -52.49 -0.30 0.46 16 36 H 0.16 0.63 5.84 -52.49 -0.31 0.32 16 37 H 0.15 0.33 8.06 -52.48 -0.42 -0.10 16 38 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 39 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 352.04 15.07 5.31 5.31 Total: -1.00 -34.32 352.04 -7.85 -42.16 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -4.63 Total: -2.12 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -4.40 Total: -14.33 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 1.01 Total: -31.92 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.11 Total: -14.88 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.32 -7.85 -42.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776793319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.304 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds