Wall clock time and date at job start Fri Apr 10 2020 22:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00091 * 2 1 4 4 H 1.48503 * 109.47217 * 240.00255 * 3 2 1 5 5 H 1.48506 * 109.47181 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47210 * 120.00108 * 3 2 1 7 7 C 1.37881 * 119.99509 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99670 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00530 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47167 * 179.97438 * 9 7 2 11 11 O 1.42904 * 109.47296 * 179.97438 * 10 9 7 12 12 C 1.35905 * 117.00284 * 180.02562 * 11 10 9 13 13 C 1.38879 * 119.97465 * 359.73534 * 12 11 10 14 14 C 1.38264 * 120.26392 * 179.72060 * 13 12 11 15 15 C 1.37972 * 120.22143 * 0.55099 * 14 13 12 16 16 C 1.39722 * 119.94945 * 359.72001 * 15 14 13 17 17 C 1.47440 * 120.13333 * 179.97438 * 16 15 14 18 18 N 1.29853 * 119.99886 * 0.02562 * 17 16 15 19 19 N 1.40101 * 120.00001 * 174.95724 * 18 17 16 20 20 C 1.35939 * 119.62918 * 5.33670 * 19 18 17 21 21 C 1.35392 * 120.67086 * 179.97438 * 20 19 18 22 22 C 1.40182 * 119.93145 * 0.02562 * 21 20 19 23 23 C 1.36497 * 119.27420 * 0.02562 * 22 21 20 24 24 C 1.34660 * 119.63155 * 185.06614 * 19 18 17 25 25 O 1.22086 * 119.97332 * 359.97438 * 24 19 18 26 26 C 1.38410 * 119.97586 * 180.02562 * 12 11 10 27 27 H 0.96996 * 120.00044 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47098 * 59.99909 * 9 7 2 29 29 H 1.08999 * 109.47262 * 300.00615 * 9 7 2 30 30 H 1.09001 * 109.46764 * 60.00547 * 10 9 7 31 31 H 1.08990 * 109.47606 * 300.00378 * 10 9 7 32 32 H 1.07995 * 119.86911 * 359.97438 * 13 12 11 33 33 H 1.08006 * 119.89086 * 180.26998 * 14 13 12 34 34 H 1.08003 * 120.02929 * 179.74396 * 15 14 13 35 35 H 1.07997 * 119.99648 * 180.02562 * 17 16 15 36 36 H 1.08002 * 119.66749 * 0.02562 * 20 19 18 37 37 H 1.08007 * 120.03299 * 180.02562 * 21 20 19 38 38 H 1.07997 * 120.35969 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.32962 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.11018 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 8 1.5307 -4.8997 -0.0012 12 6 2.2708 -6.0395 -0.0017 13 6 3.6577 -5.9662 -0.0083 14 6 4.4166 -7.1220 -0.0029 15 6 3.8012 -8.3569 -0.0025 16 6 2.4065 -8.4412 -0.0016 17 6 1.7447 -9.7587 -0.0017 18 7 2.4581 -10.8437 -0.0022 19 7 1.8332 -12.0931 0.1043 20 6 0.4759 -12.1683 0.0981 21 6 -0.1499 -13.3646 0.1993 22 6 0.6040 -14.5411 0.3125 23 6 1.9667 -14.4625 0.3195 24 6 2.5838 -13.2064 0.2062 25 8 3.8018 -13.1231 0.2049 26 6 1.6419 -7.2725 -0.0017 27 1 -0.4850 0.8400 -0.0004 28 1 0.6240 -2.5568 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 2.8724 -3.6047 0.8878 31 1 2.8712 -3.6040 -0.8921 32 1 4.1454 -5.0027 -0.0134 33 1 5.4947 -7.0580 -0.0037 34 1 4.3970 -9.2577 -0.0025 35 1 0.6665 -9.8213 -0.0014 36 1 -0.1092 -11.2647 0.0107 37 1 -1.2289 -13.4125 0.1929 38 1 0.1119 -15.4990 0.3940 39 1 2.5641 -15.3579 0.4063 40 1 0.5635 -7.3306 -0.0017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776793319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:22 Heat of formation + Delta-G solvation = 15.182901 kcal Electronic energy + Delta-G solvation = -23204.692337 eV Core-core repulsion = 19564.939522 eV Total energy + Delta-G solvation = -3639.752815 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.33898 -41.09312 -39.02836 -38.23333 -37.07262 -35.44859 -33.82904 -32.62832 -31.49392 -30.98129 -30.33766 -27.13806 -26.29590 -24.75328 -23.90493 -23.52974 -22.80808 -21.28149 -19.67262 -18.99832 -18.34335 -18.10512 -17.37745 -17.06808 -16.99805 -16.91937 -16.69210 -16.32812 -16.19795 -15.58107 -15.15710 -14.58527 -14.52675 -14.37485 -14.29127 -14.05636 -13.52346 -13.23919 -13.16718 -13.00315 -12.74306 -12.70083 -12.55056 -12.43801 -12.09996 -11.63037 -11.59273 -11.46073 -11.36904 -11.19812 -11.13341 -10.59129 -9.86876 -9.23638 -8.98985 -8.24867 -6.37708 -0.74922 -0.03885 0.43539 0.80661 0.91730 1.23009 1.42748 1.45683 1.53569 2.24174 2.48488 2.63448 2.80527 3.03335 3.09901 3.57758 3.67776 3.74892 3.85722 4.00951 4.11252 4.17926 4.25518 4.29873 4.31340 4.33514 4.46881 4.49312 4.73098 4.76835 4.94399 5.07258 5.24482 5.27111 5.34041 5.37226 5.42276 5.46768 5.51451 5.63869 5.77459 5.81434 6.09541 6.25181 6.51392 6.77125 7.03343 7.32191 8.87674 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.036949 B = 0.001917 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.621784 B =14600.723819 C =15332.865979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.028 3.972 10 C 0.082 3.918 11 O -0.333 6.333 12 C 0.107 3.893 13 C -0.191 4.191 14 C -0.084 4.084 15 C -0.122 4.122 16 C -0.038 4.038 17 C 0.163 3.837 18 N -0.295 5.295 19 N -0.362 5.362 20 C 0.056 3.944 21 C -0.192 4.192 22 C 0.006 3.994 23 C -0.261 4.261 24 C 0.511 3.489 25 O -0.591 6.591 26 C -0.114 4.114 27 H 0.266 0.734 28 H 0.001 0.999 29 H 0.001 0.999 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.136 0.864 33 H 0.151 0.849 34 H 0.130 0.870 35 H 0.173 0.827 36 H 0.197 0.803 37 H 0.193 0.807 38 H 0.182 0.818 39 H 0.161 0.839 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 -27.137 0.329 27.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.088 0.912 9 C -0.010 4.010 10 C 0.008 3.992 11 O -0.247 6.247 12 C 0.062 3.938 13 C -0.211 4.211 14 C -0.102 4.102 15 C -0.143 4.143 16 C -0.041 4.041 17 C -0.044 4.044 18 N -0.096 5.096 19 N -0.161 5.161 20 C -0.068 4.068 21 C -0.215 4.215 22 C -0.015 4.015 23 C -0.283 4.283 24 C 0.316 3.684 25 O -0.475 6.475 26 C -0.135 4.135 27 H 0.075 0.925 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.169 0.831 34 H 0.148 0.852 35 H 0.190 0.810 36 H 0.213 0.787 37 H 0.210 0.790 38 H 0.200 0.800 39 H 0.179 0.821 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.894 -27.469 0.288 27.485 hybrid contribution -0.203 1.413 -0.038 1.428 sum -1.098 -26.056 0.250 26.081 Atomic orbital electron populations 1.70098 1.07907 1.28204 1.50610 1.25986 0.95803 1.03503 0.94290 0.85394 0.78156 0.77529 0.79333 1.18971 1.20897 1.18988 1.21385 0.93845 0.91136 1.52074 0.91170 1.18959 0.94581 0.91185 0.96234 1.22900 0.95458 0.80105 1.00730 1.86096 1.36982 1.13446 1.88186 1.19238 0.90727 0.87127 0.96745 1.21735 0.92895 1.00895 1.05540 1.21137 1.01159 0.90773 0.97147 1.21433 0.93997 0.98320 1.00517 1.18037 0.92981 0.89450 1.03629 1.24990 1.00089 0.89578 0.89737 1.75598 1.26223 0.90862 1.16923 1.46665 1.06287 1.05316 1.57783 1.23110 0.82895 1.03691 0.97136 1.21325 1.03210 0.89701 1.07301 1.22070 0.92274 1.01206 0.85951 1.22228 0.97474 0.94998 1.13624 1.17738 0.87262 0.84097 0.79319 1.90924 1.15176 1.86649 1.54720 1.20582 1.01435 0.87837 1.03662 0.92495 0.98078 0.98078 0.91994 0.91963 0.84587 0.83134 0.85208 0.81039 0.78652 0.79027 0.80043 0.82146 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.03 13.29 21.45 0.28 -54.74 16 2 C 0.00 0.16 5.46 84.66 0.46 0.63 16 3 Si 0.97 42.50 29.54 68.60 2.03 44.52 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.55 -29.80 9.11 25.60 0.23 -29.56 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.03 1.43 5.34 29.84 0.16 1.59 16 10 C 0.08 3.33 4.68 71.98 0.34 3.66 16 11 O -0.33 -12.53 10.13 -92.48 -0.94 -13.47 16 12 C 0.11 3.25 6.68 22.46 0.15 3.40 16 13 C -0.19 -5.25 9.03 22.43 0.20 -5.05 16 14 C -0.08 -1.99 10.02 22.21 0.22 -1.77 16 15 C -0.12 -2.97 9.58 22.57 0.22 -2.75 16 16 C -0.04 -0.85 5.87 -20.15 -0.12 -0.97 16 17 C 0.16 2.92 10.19 87.41 0.89 3.81 16 18 N -0.29 -7.24 10.12 -52.15 -0.53 -7.77 16 19 N -0.36 -7.84 3.58 -319.44 -1.14 -8.99 16 20 C 0.06 0.60 9.99 83.40 0.83 1.43 16 21 C -0.19 -1.07 10.01 22.08 0.22 -0.85 16 22 C 0.01 0.05 10.10 22.34 0.23 0.27 16 23 C -0.26 -4.31 9.99 22.39 0.22 -4.09 16 24 C 0.51 13.60 7.52 84.79 0.64 14.24 16 25 O -0.59 -21.95 17.42 -5.60 -0.10 -22.05 16 26 C -0.11 -2.73 9.73 22.65 0.22 -2.51 16 27 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 28 H 0.00 0.04 8.14 -2.39 -0.02 0.03 16 29 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.06 2.35 7.67 -2.39 -0.02 2.33 16 31 H 0.06 2.36 7.64 -2.39 -0.02 2.34 16 32 H 0.14 3.64 6.28 -2.91 -0.02 3.63 16 33 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.13 3.28 7.55 -2.91 -0.02 3.26 16 35 H 0.17 1.37 5.74 -2.91 -0.02 1.35 16 36 H 0.20 0.60 5.84 -2.91 -0.02 0.58 16 37 H 0.19 -0.48 8.06 -2.91 -0.02 -0.50 16 38 H 0.18 -0.17 8.06 -2.91 -0.02 -0.19 16 39 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 40 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -80.60 352.04 5.78 -74.82 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 1.06 Total: 6.18 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 5.12 Total: -18.50 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.39 Total: -71.49 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.03 Total: -35.52 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -80.60 5.78 -74.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776793319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.001 kcal (2) G-P(sol) polarization free energy of solvation -80.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds