Wall clock time and date at job start Fri Apr 10 2020 22:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38380 * 120.00136 * 2 1 4 4 N 1.32127 * 119.99865 * 179.97438 * 3 2 1 5 5 C 1.32156 * 119.99704 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99598 * 179.97438 * 5 4 3 7 7 O 1.45199 * 109.47032 * 180.02562 * 6 5 4 8 8 C 1.34234 * 117.00182 * 180.02562 * 7 6 5 9 9 O 1.20823 * 119.99491 * 359.97438 * 8 7 6 10 10 C 1.50693 * 119.99722 * 179.97438 * 8 7 6 11 11 C 1.50706 * 109.46906 * 179.97438 * 10 8 7 12 12 C 1.37632 * 120.12924 * 265.00072 * 11 10 8 13 13 C 1.38614 * 120.25049 * 179.97438 * 12 11 10 14 14 C 1.38650 * 120.50064 * 0.02562 * 13 12 11 15 15 C 1.37601 * 120.24925 * 0.02562 * 14 13 12 16 16 C 1.40700 * 120.12470 * 84.72349 * 11 10 8 17 17 C 1.41397 * 120.24713 * 359.97438 * 16 11 10 18 18 H 1.07998 * 119.99588 * 329.70087 * 17 16 11 19 19 C 1.39948 * 120.00082 * 149.70100 * 17 16 11 20 20 N 1.30818 * 119.99680 * 162.01372 * 19 17 16 21 21 Si 1.86798 * 119.99768 * 342.01702 * 19 17 16 22 22 H 1.48494 * 109.47190 * 95.40206 * 21 19 17 23 23 H 1.48504 * 109.46678 * 215.40175 * 21 19 17 24 24 H 1.48496 * 109.47290 * 335.39809 * 21 19 17 25 25 C 1.38342 * 120.00411 * 0.25849 * 5 4 3 26 26 N 1.32123 * 119.99761 * 179.97438 * 2 1 3 27 27 H 1.09009 * 109.46953 * 90.00218 * 1 2 3 28 28 H 1.08998 * 109.47529 * 210.00248 * 1 2 3 29 29 H 1.08998 * 109.47464 * 330.00654 * 1 2 3 30 30 H 1.08007 * 120.00423 * 359.97438 * 3 2 1 31 31 H 1.08994 * 109.47197 * 60.00353 * 6 5 4 32 32 H 1.09006 * 109.47084 * 300.00060 * 6 5 4 33 33 H 1.09001 * 109.47727 * 59.99967 * 10 8 7 34 34 H 1.09000 * 109.47533 * 299.99271 * 10 8 7 35 35 H 1.08001 * 119.87731 * 359.97438 * 12 11 10 36 36 H 1.07998 * 119.75054 * 179.97438 * 13 12 11 37 37 H 1.08004 * 119.88166 * 179.97438 * 14 13 12 38 38 H 1.08007 * 120.12858 * 179.97438 * 15 14 13 39 39 H 0.97004 * 119.99666 * 179.97438 * 20 19 17 40 40 H 1.07993 * 120.00171 * 179.71725 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5203 1.1983 0.0005 5 6 4.1809 0.0538 0.0015 6 6 5.6879 0.0537 0.0015 7 8 6.1719 -1.3152 0.0021 8 6 7.5026 -1.4912 0.0028 9 8 8.2386 -0.5330 0.0023 10 6 8.0784 -2.8838 0.0040 11 6 9.5834 -2.8051 0.0039 12 6 10.2787 -2.8737 -1.1820 13 6 11.6629 -2.8010 -1.1851 14 6 12.3628 -2.6591 0.0034 15 6 11.6886 -2.5895 1.2008 16 6 10.2828 -2.6553 1.2155 17 6 9.5789 -2.5773 2.4393 18 1 8.5866 -2.1518 2.4652 19 6 10.1680 -3.0514 3.6169 20 7 9.6991 -2.6771 4.7794 21 14 11.6238 -4.2185 3.5286 22 1 12.8862 -3.4444 3.6385 23 1 11.5434 -5.1953 4.6442 24 1 11.5990 -4.9437 2.2330 25 6 3.4892 -1.1443 -0.0033 26 7 2.1676 -1.1442 0.0005 27 1 -0.3633 0.0000 -1.0278 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6590 2.1338 -0.0004 31 1 6.0513 0.5682 0.8910 32 1 6.0513 0.5668 -0.8889 33 1 7.7428 -3.4167 -0.8857 34 1 7.7422 -3.4153 0.8943 35 1 9.7438 -2.9845 -2.1136 36 1 12.2004 -2.8560 -2.1202 37 1 13.4414 -2.6039 -0.0106 38 1 12.2358 -2.4794 2.1255 39 1 10.1073 -3.0061 5.5956 40 1 4.0291 -2.0796 -0.0071 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776885076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:25 Heat of formation + Delta-G solvation = -24.779277 kcal Electronic energy + Delta-G solvation = -24417.341586 eV Core-core repulsion = 20775.855880 eV Total energy + Delta-G solvation = -3641.485706 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36525 -40.00276 -37.96426 -36.18476 -34.82788 -33.64624 -33.16554 -32.05632 -30.39511 -29.90648 -27.39771 -25.73228 -24.95332 -24.79441 -22.30460 -21.55627 -21.07203 -19.50633 -17.95135 -17.41588 -17.00666 -16.82829 -16.41670 -15.91144 -15.73328 -15.26656 -15.11066 -14.48966 -14.26595 -13.77603 -13.57203 -13.48237 -12.88059 -12.82498 -12.68535 -12.57770 -12.34338 -12.11327 -11.95053 -11.74145 -11.50123 -11.35455 -11.22032 -10.86196 -10.79541 -10.56959 -10.29755 -9.90827 -9.76281 -9.62555 -9.24123 -9.17459 -9.16689 -7.67615 -7.58539 -6.98438 -4.54478 0.55087 0.93791 2.35469 2.66142 2.82796 2.89670 3.09989 3.20346 3.29902 3.43761 3.82719 3.95333 4.13534 4.26675 4.47852 4.52664 4.86648 4.91477 5.20166 5.21429 5.28941 5.30250 5.37958 5.43914 5.60165 5.65105 5.77928 5.88978 6.02985 6.13470 6.18035 6.23311 6.49746 6.66496 6.77363 6.89847 7.08916 7.14655 7.37885 7.58807 7.59666 7.69138 7.83850 8.07654 8.27483 8.34055 8.60972 8.76178 10.03393 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.003108 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.708843 B = 9006.740215 C = 9861.504131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.070 3.930 3 C 0.054 3.946 4 N -0.431 5.431 5 C 0.073 3.927 6 C 0.123 3.877 7 O -0.368 6.368 8 C 0.465 3.535 9 O -0.486 6.486 10 C -0.042 4.042 11 C -0.183 4.183 12 C -0.063 4.063 13 C -0.244 4.244 14 C -0.076 4.076 15 C -0.232 4.232 16 C 0.111 3.889 17 C -0.445 4.445 18 H 0.088 0.912 19 C 0.085 3.915 20 N -0.805 5.805 21 Si 0.911 3.089 22 H -0.271 1.271 23 H -0.291 1.291 24 H -0.243 1.243 25 C 0.081 3.919 26 N -0.438 5.438 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.171 0.829 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.285 0.715 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.538 2.201 -7.702 15.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.070 4.070 3 C -0.107 4.107 4 N -0.147 5.147 5 C -0.067 4.067 6 C 0.048 3.952 7 O -0.286 6.286 8 C 0.307 3.693 9 O -0.370 6.370 10 C -0.080 4.080 11 C -0.185 4.185 12 C -0.081 4.081 13 C -0.263 4.263 14 C -0.094 4.094 15 C -0.251 4.251 16 C 0.108 3.892 17 C -0.473 4.473 18 H 0.106 0.894 19 C -0.134 4.134 20 N -0.429 5.429 21 Si 0.737 3.263 22 H -0.197 1.197 23 H -0.219 1.219 24 H -0.166 1.166 25 C -0.079 4.079 26 N -0.154 5.154 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.188 0.812 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -13.362 2.539 -7.398 15.483 hybrid contribution 0.743 -0.083 0.246 0.787 sum -12.618 2.456 -7.152 14.711 Atomic orbital electron populations 1.20677 0.87660 1.03976 1.03427 1.22391 0.98616 0.89864 0.96139 1.23540 0.90018 0.99326 0.97771 1.67990 1.08995 1.29002 1.08686 1.21779 0.96718 0.90378 0.97826 1.21169 0.87052 0.82439 1.04580 1.86398 1.26935 1.29726 1.85533 1.24412 0.78685 0.94042 0.72173 1.90676 1.59748 1.42957 1.43640 1.20013 0.93969 0.89133 1.04859 1.19041 0.91222 1.14373 0.93838 1.20459 0.94103 0.97941 0.95611 1.20344 0.93838 1.15660 0.96447 1.20632 0.97607 0.98025 0.93149 1.21015 0.94708 1.12894 0.96502 1.17486 0.91290 0.87890 0.92583 1.19428 1.03526 1.34658 0.89731 0.89366 1.26173 0.97292 0.95408 0.94566 1.69701 1.38842 1.35274 0.99037 0.86320 0.80518 0.80226 0.79202 1.19699 1.21858 1.16558 1.23704 0.89896 1.00115 0.94191 1.68402 1.08756 1.29146 1.09052 0.90006 0.90089 0.90221 0.81195 0.88540 0.88857 0.88863 0.86845 0.88838 0.88833 0.88860 0.88190 0.90417 0.80027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.19 36.01 0.37 -0.26 16 2 C 0.07 0.73 6.79 -82.41 -0.56 0.17 16 3 C 0.05 0.56 10.88 -17.37 -0.19 0.37 16 4 N -0.43 -5.69 10.42 -9.29 -0.10 -5.79 16 5 C 0.07 1.00 6.78 -82.41 -0.56 0.44 16 6 C 0.12 1.81 6.02 36.01 0.22 2.03 16 7 O -0.37 -5.88 8.69 -39.27 -0.34 -6.22 16 8 C 0.46 8.87 7.55 36.00 0.27 9.14 16 9 O -0.49 -10.99 15.78 -18.75 -0.30 -11.29 16 10 C -0.04 -0.78 5.30 -29.03 -0.15 -0.93 16 11 C -0.18 -4.05 4.43 -103.91 -0.46 -4.51 16 12 C -0.06 -1.30 9.66 -39.66 -0.38 -1.68 16 13 C -0.24 -5.06 10.05 -39.29 -0.39 -5.45 16 14 C -0.08 -1.66 10.02 -39.66 -0.40 -2.05 16 15 C -0.23 -5.62 7.17 -38.87 -0.28 -5.90 16 16 C 0.11 2.75 5.10 -106.82 -0.54 2.21 16 17 C -0.45 -11.68 8.56 -37.74 -0.32 -12.00 16 18 H 0.09 2.43 6.99 -52.49 -0.37 2.06 16 19 C 0.09 2.19 5.41 -17.34 -0.09 2.09 16 20 N -0.80 -21.15 13.93 55.55 0.77 -20.38 16 21 Si 0.91 20.43 24.52 -169.99 -4.17 16.26 16 22 H -0.27 -5.98 6.71 56.52 0.38 -5.60 16 23 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.24 -5.51 6.85 56.52 0.39 -5.12 16 25 C 0.08 1.06 10.56 -17.37 -0.18 0.87 16 26 N -0.44 -5.57 10.42 -9.29 -0.10 -5.67 16 27 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.17 1.12 8.06 -52.48 -0.42 0.69 16 31 H 0.10 1.51 8.13 -51.93 -0.42 1.09 16 32 H 0.09 1.32 8.13 -51.93 -0.42 0.90 16 33 H 0.09 1.37 8.05 -51.93 -0.42 0.95 16 34 H 0.11 2.09 7.15 -51.93 -0.37 1.71 16 35 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 38 H 0.10 2.42 4.74 -52.48 -0.25 2.17 16 39 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 40 H 0.18 2.21 6.99 -52.49 -0.37 1.84 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -30.81 344.00 -7.45 -38.26 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.74 Total: 5.12 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -3.67 Total: -15.49 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.58 Total: -31.84 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.64 Total: -17.50 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.17 Total: 16.26 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.81 -7.45 -38.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776885076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.478 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds