Wall clock time and date at job start Fri Apr 10 2020 22:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38380 * 120.00136 * 2 1 4 4 N 1.32127 * 119.99865 * 179.97438 * 3 2 1 5 5 C 1.32156 * 119.99704 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99598 * 179.97438 * 5 4 3 7 7 O 1.45199 * 109.47032 * 180.02562 * 6 5 4 8 8 C 1.34234 * 117.00182 * 180.02562 * 7 6 5 9 9 O 1.20823 * 119.99491 * 359.97438 * 8 7 6 10 10 C 1.50693 * 119.99722 * 179.97438 * 8 7 6 11 11 C 1.50706 * 109.46906 * 179.97438 * 10 8 7 12 12 C 1.37632 * 120.12924 * 265.00072 * 11 10 8 13 13 C 1.38614 * 120.25049 * 179.97438 * 12 11 10 14 14 C 1.38650 * 120.50064 * 0.02562 * 13 12 11 15 15 C 1.37601 * 120.24925 * 0.02562 * 14 13 12 16 16 C 1.40700 * 120.12470 * 84.72349 * 11 10 8 17 17 C 1.41397 * 120.24713 * 359.97438 * 16 11 10 18 18 H 1.07998 * 119.99588 * 329.70087 * 17 16 11 19 19 C 1.39948 * 120.00082 * 149.70100 * 17 16 11 20 20 N 1.30818 * 119.99680 * 162.01372 * 19 17 16 21 21 Si 1.86798 * 119.99768 * 342.01702 * 19 17 16 22 22 H 1.48494 * 109.47190 * 95.40206 * 21 19 17 23 23 H 1.48504 * 109.46678 * 215.40175 * 21 19 17 24 24 H 1.48496 * 109.47290 * 335.39809 * 21 19 17 25 25 C 1.38342 * 120.00411 * 0.25849 * 5 4 3 26 26 N 1.32123 * 119.99761 * 179.97438 * 2 1 3 27 27 H 1.09009 * 109.46953 * 90.00218 * 1 2 3 28 28 H 1.08998 * 109.47529 * 210.00248 * 1 2 3 29 29 H 1.08998 * 109.47464 * 330.00654 * 1 2 3 30 30 H 1.08007 * 120.00423 * 359.97438 * 3 2 1 31 31 H 1.08994 * 109.47197 * 60.00353 * 6 5 4 32 32 H 1.09006 * 109.47084 * 300.00060 * 6 5 4 33 33 H 1.09001 * 109.47727 * 59.99967 * 10 8 7 34 34 H 1.09000 * 109.47533 * 299.99271 * 10 8 7 35 35 H 1.08001 * 119.87731 * 359.97438 * 12 11 10 36 36 H 1.07998 * 119.75054 * 179.97438 * 13 12 11 37 37 H 1.08004 * 119.88166 * 179.97438 * 14 13 12 38 38 H 1.08007 * 120.12858 * 179.97438 * 15 14 13 39 39 H 0.97004 * 119.99666 * 179.97438 * 20 19 17 40 40 H 1.07993 * 120.00171 * 179.71725 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5203 1.1983 0.0005 5 6 4.1809 0.0538 0.0015 6 6 5.6879 0.0537 0.0015 7 8 6.1719 -1.3152 0.0021 8 6 7.5026 -1.4912 0.0028 9 8 8.2386 -0.5330 0.0023 10 6 8.0784 -2.8838 0.0040 11 6 9.5834 -2.8051 0.0039 12 6 10.2787 -2.8737 -1.1820 13 6 11.6629 -2.8010 -1.1851 14 6 12.3628 -2.6591 0.0034 15 6 11.6886 -2.5895 1.2008 16 6 10.2828 -2.6553 1.2155 17 6 9.5789 -2.5773 2.4393 18 1 8.5866 -2.1518 2.4652 19 6 10.1680 -3.0514 3.6169 20 7 9.6991 -2.6771 4.7794 21 14 11.6238 -4.2185 3.5286 22 1 12.8862 -3.4444 3.6385 23 1 11.5434 -5.1953 4.6442 24 1 11.5990 -4.9437 2.2330 25 6 3.4892 -1.1443 -0.0033 26 7 2.1676 -1.1442 0.0005 27 1 -0.3633 0.0000 -1.0278 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6590 2.1338 -0.0004 31 1 6.0513 0.5682 0.8910 32 1 6.0513 0.5668 -0.8889 33 1 7.7428 -3.4167 -0.8857 34 1 7.7422 -3.4153 0.8943 35 1 9.7438 -2.9845 -2.1136 36 1 12.2004 -2.8560 -2.1202 37 1 13.4414 -2.6039 -0.0106 38 1 12.2358 -2.4794 2.1255 39 1 10.1073 -3.0061 5.5956 40 1 4.0291 -2.0796 -0.0071 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776885076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:24 Heat of formation + Delta-G solvation = -43.275433 kcal Electronic energy + Delta-G solvation = -24418.143639 eV Core-core repulsion = 20775.855880 eV Total energy + Delta-G solvation = -3642.287759 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.32087 -41.47669 -39.64692 -37.65682 -35.78357 -35.50785 -34.09322 -33.64674 -32.19140 -30.88903 -28.91118 -26.98138 -26.43527 -25.79992 -23.42777 -23.14449 -22.59686 -21.12948 -19.27676 -19.09294 -18.18721 -18.14770 -17.80010 -17.43826 -16.78954 -16.40199 -16.31432 -16.11181 -15.82622 -15.47145 -14.75295 -14.65864 -14.52943 -13.95227 -13.78159 -13.62058 -13.55839 -13.54704 -13.17992 -13.11856 -12.83434 -12.70695 -12.68647 -12.52911 -12.27923 -12.00520 -11.90807 -11.55266 -11.50585 -11.40604 -10.98064 -10.16851 -10.07815 -9.41741 -9.35451 -8.88149 -6.48217 -0.35839 0.01005 0.69744 0.89305 1.27881 1.28967 1.38219 1.50174 1.56557 2.13388 2.52477 2.63215 2.91593 3.18772 3.38216 3.55588 3.65068 3.91863 3.95196 4.06687 4.10717 4.18918 4.25976 4.43743 4.48015 4.53468 4.55859 4.72378 4.78170 4.85286 4.91716 4.93356 5.07540 5.14882 5.31461 5.35329 5.39817 5.66024 5.85004 5.93028 6.03496 6.17609 6.26492 6.43775 6.67156 6.76017 6.82449 6.88396 8.19580 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.003108 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.708843 B = 9006.740215 C = 9861.504131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.075 3.925 3 C 0.058 3.942 4 N -0.452 5.452 5 C 0.053 3.947 6 C 0.127 3.873 7 O -0.355 6.355 8 C 0.471 3.529 9 O -0.528 6.528 10 C -0.044 4.044 11 C -0.186 4.186 12 C -0.070 4.070 13 C -0.231 4.231 14 C -0.086 4.086 15 C -0.256 4.256 16 C 0.085 3.915 17 C -0.473 4.473 18 H 0.057 0.943 19 C 0.048 3.952 20 N -0.850 5.850 21 Si 0.964 3.036 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.247 1.247 25 C 0.070 3.930 26 N -0.458 5.458 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.212 0.788 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.139 0.861 34 H 0.108 0.892 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.092 0.908 39 H 0.292 0.708 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.432 1.899 -10.238 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.067 4.067 3 C -0.103 4.103 4 N -0.168 5.168 5 C -0.085 4.085 6 C 0.052 3.948 7 O -0.272 6.272 8 C 0.315 3.685 9 O -0.415 6.415 10 C -0.081 4.081 11 C -0.188 4.188 12 C -0.088 4.088 13 C -0.249 4.249 14 C -0.104 4.104 15 C -0.275 4.275 16 C 0.083 3.917 17 C -0.502 4.502 18 H 0.075 0.925 19 C -0.166 4.166 20 N -0.477 5.477 21 Si 0.788 3.212 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.170 1.170 25 C -0.088 4.088 26 N -0.174 5.174 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.228 0.772 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.157 0.843 34 H 0.126 0.874 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.251 2.209 -9.941 17.515 hybrid contribution 0.864 0.115 0.798 1.182 sum -13.387 2.324 -9.142 16.377 Atomic orbital electron populations 1.20845 0.84476 1.05296 1.04861 1.23140 1.00588 0.89172 0.93752 1.24255 0.89022 1.01088 0.95959 1.67966 1.10628 1.28858 1.09321 1.21515 0.95785 0.91101 1.00106 1.21153 0.88341 0.81299 1.04006 1.86372 1.25299 1.30711 1.84794 1.24469 0.79233 0.93814 0.70986 1.90657 1.60854 1.44205 1.45815 1.20097 0.92155 0.89076 1.06762 1.19469 0.93173 1.12564 0.93570 1.20943 0.94579 0.96822 0.96493 1.20902 0.94211 1.12347 0.97479 1.21018 0.99350 0.97401 0.92643 1.21156 0.94668 1.14202 0.97461 1.17730 0.92041 0.88798 0.93150 1.19355 1.02815 1.36812 0.91237 0.92506 1.26809 0.99384 0.96350 0.94100 1.69741 1.40895 1.37347 0.99689 0.85506 0.77993 0.78645 0.79064 1.19319 1.20595 1.17028 1.23693 0.90450 0.99894 0.94768 1.68458 1.08427 1.30578 1.09953 0.88264 0.90388 0.87303 0.77182 0.90232 0.88507 0.84340 0.87366 0.85001 0.85178 0.85963 0.89062 0.89795 0.80008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 10.19 71.24 0.73 -0.18 16 2 C 0.07 1.39 6.79 42.55 0.29 1.68 16 3 C 0.06 1.08 10.88 84.68 0.92 2.00 16 4 N -0.45 -11.67 10.42 -183.29 -1.91 -13.58 16 5 C 0.05 1.48 6.78 42.53 0.29 1.77 16 6 C 0.13 3.92 6.02 71.24 0.43 4.35 16 7 O -0.35 -11.63 8.69 -51.46 -0.45 -12.07 16 8 C 0.47 18.27 7.55 71.23 0.54 18.81 16 9 O -0.53 -24.55 15.78 21.97 0.35 -24.20 16 10 C -0.04 -1.60 5.30 29.10 0.15 -1.44 16 11 C -0.19 -8.08 4.43 -19.40 -0.09 -8.17 16 12 C -0.07 -2.68 9.66 22.22 0.21 -2.47 16 13 C -0.23 -8.68 10.05 22.46 0.23 -8.46 16 14 C -0.09 -3.55 10.02 22.22 0.22 -3.33 16 15 C -0.26 -12.34 7.17 22.73 0.16 -12.17 16 16 C 0.09 4.31 5.10 -21.29 -0.11 4.20 16 17 C -0.47 -26.08 8.56 23.46 0.20 -25.88 16 18 H 0.06 3.37 6.99 -2.91 -0.02 3.35 16 19 C 0.05 2.58 5.41 85.26 0.46 3.04 16 20 N -0.85 -47.03 13.93 21.83 0.30 -46.73 16 21 Si 0.96 43.08 24.52 68.60 1.68 44.77 16 22 H -0.27 -11.62 6.71 99.48 0.67 -10.95 16 23 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.25 -11.04 6.85 99.48 0.68 -10.36 16 25 C 0.07 1.85 10.56 84.67 0.89 2.75 16 26 N -0.46 -11.29 10.42 -183.30 -1.91 -13.20 16 27 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.11 0.42 8.09 -2.39 -0.02 0.40 16 30 H 0.21 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.08 2.68 8.13 -2.39 -0.02 2.67 16 32 H 0.10 2.85 8.13 -2.38 -0.02 2.83 16 33 H 0.14 3.69 8.05 -2.39 -0.02 3.67 16 34 H 0.11 4.09 7.15 -2.39 -0.02 4.07 16 35 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 36 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 37 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.09 4.46 4.74 -2.91 -0.01 4.45 16 39 H 0.29 14.58 8.30 -92.71 -0.77 13.81 16 40 H 0.18 4.54 6.99 -2.91 -0.02 4.52 16 Total: -1.00 -70.18 344.00 4.60 -65.58 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 1.01 Total: 22.97 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 5.53 Total: -23.52 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -3.52 Total: -73.52 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -0.10 Total: -36.28 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.68 Total: 44.77 kcal Total: -70.18 4.60 -65.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776885076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.301 kcal (2) G-P(sol) polarization free energy of solvation -70.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds