Wall clock time and date at job start Fri Apr 10 2020 22:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38620 * 120.44571 * 2 1 4 4 C 1.38580 * 118.39870 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.45049 * 180.02562 * 4 3 2 6 6 O 1.45203 * 109.46602 * 359.97438 * 5 4 3 7 7 C 1.34232 * 116.99836 * 180.02562 * 6 5 4 8 8 O 1.20830 * 119.99544 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00103 * 180.02562 * 7 6 5 10 10 C 1.50707 * 109.47262 * 179.97438 * 9 7 6 11 11 C 1.37643 * 120.12639 * 265.30991 * 10 9 7 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 84.99750 * 10 9 7 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.07999 * 119.99289 * 334.28466 * 16 15 10 18 18 C 1.39937 * 120.00394 * 154.28925 * 16 15 10 19 19 N 1.30829 * 120.00181 * 334.60180 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 154.60226 * 18 16 15 21 21 H 1.48505 * 109.47160 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47100 * 300.00105 * 20 18 16 23 23 H 1.48502 * 109.47051 * 60.00179 * 20 18 16 24 24 N 1.32346 * 119.10576 * 0.27240 * 4 3 2 25 25 C 1.31786 * 120.81818 * 359.44356 * 24 4 3 26 26 N 1.31814 * 121.75027 * 0.57423 * 25 24 4 27 27 H 1.08999 * 109.46572 * 90.00089 * 1 2 3 28 28 H 1.08992 * 109.46801 * 209.99880 * 1 2 3 29 29 H 1.08992 * 109.47193 * 330.00344 * 1 2 3 30 30 H 1.08003 * 120.80322 * 0.04197 * 3 2 1 31 31 H 1.09000 * 109.47091 * 240.00292 * 5 4 3 32 32 H 1.08994 * 109.47137 * 119.99371 * 5 4 3 33 33 H 1.09001 * 109.46892 * 59.99945 * 9 7 6 34 34 H 1.08991 * 109.47294 * 299.99955 * 9 7 6 35 35 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 36 36 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 37 37 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 38 38 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 39 39 H 0.96998 * 119.99709 * 354.17607 * 19 18 16 40 40 H 1.08003 * 119.12755 * 180.26787 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1951 0.0000 4 6 3.5944 1.1456 -0.0005 5 6 4.4040 2.4166 0.0000 6 8 3.5093 3.5603 0.0005 7 6 4.0759 4.7772 0.0005 8 8 5.2795 4.8831 0.0006 9 6 3.2108 6.0111 0.0016 10 6 4.0858 7.2381 0.0020 11 6 4.4082 7.8564 1.1887 12 6 5.2074 8.9889 1.1914 13 6 5.6965 9.5078 0.0023 14 6 5.3923 8.9026 -1.1954 15 6 4.5817 7.7521 -1.2101 16 6 4.2631 7.1212 -2.4348 17 1 4.0162 6.0700 -2.4523 18 6 4.2679 7.8588 -3.6240 19 7 4.0695 9.1516 -3.5927 20 14 4.5575 6.9976 -5.2561 21 1 4.5139 7.9941 -6.3563 22 1 5.8875 6.3372 -5.2382 23 1 3.5008 5.9766 -5.4715 24 7 4.1964 -0.0330 -0.0065 25 6 3.4957 -1.1491 -0.0010 26 7 2.1776 -1.1406 -0.0005 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8899 0.5137 30 1 1.6899 2.1419 0.0007 31 1 5.0322 2.4476 -0.8902 32 1 5.0328 2.4464 0.8898 33 1 2.5822 6.0132 0.8920 34 1 2.5809 6.0139 -0.8879 35 1 4.0331 7.4604 2.1209 36 1 5.4512 9.4705 2.1268 37 1 6.3187 10.3905 0.0161 38 1 5.7747 9.3082 -2.1203 39 1 3.8356 9.5862 -2.7577 40 1 4.0152 -2.0960 -0.0017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777052731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:27 Heat of formation + Delta-G solvation = -32.781216 kcal Electronic energy + Delta-G solvation = -24543.345271 eV Core-core repulsion = 20901.512575 eV Total energy + Delta-G solvation = -3641.832696 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31465 -40.05194 -37.93270 -36.23900 -34.75731 -33.94068 -33.08791 -32.01334 -29.33889 -29.26670 -27.88503 -26.74698 -25.02996 -24.29208 -22.00822 -21.26237 -21.02519 -19.70307 -17.92450 -17.75441 -17.06026 -16.81571 -16.47772 -15.55546 -15.43560 -15.28705 -14.95531 -14.50289 -14.22736 -13.86697 -13.58865 -13.47409 -13.32585 -12.93656 -12.71496 -12.42348 -12.20900 -12.11120 -11.81457 -11.42413 -11.29099 -11.04960 -10.93571 -10.90813 -10.54571 -10.43187 -10.29805 -9.95470 -9.75554 -9.65159 -9.48657 -9.46414 -9.03438 -7.67227 -7.60695 -7.21321 -4.52440 0.72237 0.77407 2.41508 2.76775 2.77365 2.94019 3.12555 3.24482 3.33530 3.50133 3.80976 3.97002 3.99290 4.17451 4.51966 4.73965 4.84797 5.09953 5.16283 5.20439 5.24732 5.31943 5.43753 5.53273 5.59161 5.62606 5.78391 5.90262 6.08647 6.17667 6.22609 6.27192 6.55683 6.74416 6.80475 6.91287 7.10876 7.32671 7.59707 7.73854 7.75400 7.85479 7.86557 8.10813 8.23854 8.27698 8.67755 8.82747 9.99472 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.003524 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.335320 B = 7943.181972 C = 9023.400320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.174 3.826 3 C -0.204 4.204 4 C 0.179 3.821 5 C 0.114 3.886 6 O -0.367 6.367 7 C 0.462 3.538 8 O -0.486 6.486 9 C -0.038 4.038 10 C -0.202 4.202 11 C -0.063 4.063 12 C -0.253 4.253 13 C -0.082 4.082 14 C -0.214 4.214 15 C 0.117 3.883 16 C -0.517 4.517 17 H 0.072 0.928 18 C 0.042 3.958 19 N -0.793 5.793 20 Si 1.059 2.941 21 H -0.273 1.273 22 H -0.274 1.274 23 H -0.276 1.276 24 N -0.522 5.522 25 C 0.301 3.699 26 N -0.527 5.527 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.159 0.841 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.300 0.700 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.591 -13.769 4.828 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.226 4.226 4 C 0.034 3.966 5 C 0.040 3.960 6 O -0.285 6.285 7 C 0.304 3.696 8 O -0.370 6.370 9 C -0.075 4.075 10 C -0.203 4.203 11 C -0.081 4.081 12 C -0.273 4.273 13 C -0.101 4.101 14 C -0.234 4.234 15 C 0.114 3.886 16 C -0.545 4.545 17 H 0.090 0.910 18 C -0.181 4.181 19 N -0.416 5.416 20 Si 0.882 3.118 21 H -0.197 1.197 22 H -0.200 1.200 23 H -0.201 1.201 24 N -0.238 5.238 25 C 0.013 3.987 26 N -0.242 5.242 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.177 0.823 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.565 -14.266 3.186 15.641 hybrid contribution -0.200 0.392 1.711 1.767 sum -5.765 -13.875 4.897 15.803 Atomic orbital electron populations 1.20800 0.87589 1.04150 1.03871 1.21808 0.97800 0.88083 0.89511 1.22656 0.95544 1.01195 1.03160 1.21215 0.91774 0.93008 0.90588 1.21287 0.90140 0.79832 1.04785 1.86440 1.41321 1.15189 1.85556 1.24572 0.89410 0.83427 0.72182 1.90674 1.16236 1.86478 1.43608 1.19971 0.96589 0.86570 1.04370 1.18978 1.07765 0.99579 0.94020 1.20387 0.96944 0.95359 0.95420 1.20282 1.09159 1.01468 0.96351 1.20643 0.98284 0.97908 0.93243 1.21162 1.04496 1.00995 0.96701 1.17395 0.88386 0.90767 0.92010 1.20474 1.43139 0.98400 0.92481 0.90984 1.26945 0.91523 0.95055 1.04534 1.70459 1.26821 1.10751 1.33599 0.83721 0.78093 0.75948 0.73990 1.19722 1.19963 1.20108 1.67982 1.42243 0.98406 1.15173 1.24898 0.86698 0.96369 0.90755 1.68245 1.10350 1.30557 1.15081 0.89505 0.89959 0.89813 0.82320 0.88308 0.88529 0.89190 0.87352 0.89345 0.89245 0.89198 0.87602 0.88617 0.78457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.22 36.01 0.37 -0.40 16 2 C 0.17 1.87 6.82 -82.24 -0.56 1.31 16 3 C -0.20 -2.39 9.17 -39.31 -0.36 -2.75 16 4 C 0.18 2.37 6.82 -82.24 -0.56 1.81 16 5 C 0.11 1.64 6.03 36.01 0.22 1.85 16 6 O -0.37 -5.74 8.77 -39.26 -0.34 -6.08 16 7 C 0.46 8.77 7.59 36.00 0.27 9.04 16 8 O -0.49 -10.96 15.78 -18.75 -0.30 -11.25 16 9 C -0.04 -0.71 5.29 -29.03 -0.15 -0.86 16 10 C -0.20 -4.61 4.43 -103.91 -0.46 -5.07 16 11 C -0.06 -1.37 9.66 -39.66 -0.38 -1.75 16 12 C -0.25 -5.59 10.05 -39.29 -0.39 -5.98 16 13 C -0.08 -1.90 10.02 -39.66 -0.40 -2.30 16 14 C -0.21 -5.44 7.95 -38.87 -0.31 -5.75 16 15 C 0.12 2.99 5.30 -106.82 -0.57 2.42 16 16 C -0.52 -13.15 8.08 -37.74 -0.30 -13.45 16 17 H 0.07 1.79 6.73 -52.49 -0.35 1.44 16 18 C 0.04 1.03 4.94 -17.34 -0.09 0.95 16 19 N -0.79 -20.41 12.31 55.55 0.68 -19.73 16 20 Si 1.06 21.38 30.00 -169.99 -5.10 16.28 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 24 N -0.52 -6.79 10.38 -10.80 -0.11 -6.90 16 25 C 0.30 3.34 12.29 -92.14 -1.13 2.21 16 26 N -0.53 -6.10 10.38 -10.79 -0.11 -6.21 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.16 1.69 7.10 -52.48 -0.37 1.32 16 31 H 0.10 1.47 8.13 -51.93 -0.42 1.04 16 32 H 0.10 1.35 8.13 -51.93 -0.42 0.93 16 33 H 0.09 1.38 8.05 -51.93 -0.42 0.96 16 34 H 0.11 2.01 7.06 -51.93 -0.37 1.64 16 35 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 38 H 0.11 2.77 6.49 -52.49 -0.34 2.43 16 39 H 0.30 7.88 6.68 -40.82 -0.27 7.61 16 40 H 0.20 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -30.06 348.60 -9.56 -39.62 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.72 Total: 7.74 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -4.81 Total: -18.72 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.46 Total: -32.84 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.64 Total: -17.34 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.10 Total: 16.28 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.06 -9.56 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777052731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.844 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds