Wall clock time and date at job start Fri Apr 10 2020 22:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38620 * 120.44571 * 2 1 4 4 C 1.38580 * 118.39870 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.45049 * 180.02562 * 4 3 2 6 6 O 1.45203 * 109.46602 * 359.97438 * 5 4 3 7 7 C 1.34232 * 116.99836 * 180.02562 * 6 5 4 8 8 O 1.20830 * 119.99544 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00103 * 180.02562 * 7 6 5 10 10 C 1.50707 * 109.47262 * 179.97438 * 9 7 6 11 11 C 1.37643 * 120.12639 * 265.30991 * 10 9 7 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 84.99750 * 10 9 7 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.07999 * 119.99289 * 334.28466 * 16 15 10 18 18 C 1.39937 * 120.00394 * 154.28925 * 16 15 10 19 19 N 1.30829 * 120.00181 * 334.60180 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 154.60226 * 18 16 15 21 21 H 1.48505 * 109.47160 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47100 * 300.00105 * 20 18 16 23 23 H 1.48502 * 109.47051 * 60.00179 * 20 18 16 24 24 N 1.32346 * 119.10576 * 0.27240 * 4 3 2 25 25 C 1.31786 * 120.81818 * 359.44356 * 24 4 3 26 26 N 1.31814 * 121.75027 * 0.57423 * 25 24 4 27 27 H 1.08999 * 109.46572 * 90.00089 * 1 2 3 28 28 H 1.08992 * 109.46801 * 209.99880 * 1 2 3 29 29 H 1.08992 * 109.47193 * 330.00344 * 1 2 3 30 30 H 1.08003 * 120.80322 * 0.04197 * 3 2 1 31 31 H 1.09000 * 109.47091 * 240.00292 * 5 4 3 32 32 H 1.08994 * 109.47137 * 119.99371 * 5 4 3 33 33 H 1.09001 * 109.46892 * 59.99945 * 9 7 6 34 34 H 1.08991 * 109.47294 * 299.99955 * 9 7 6 35 35 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 36 36 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 37 37 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 38 38 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 39 39 H 0.96998 * 119.99709 * 354.17607 * 19 18 16 40 40 H 1.08003 * 119.12755 * 180.26787 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1951 0.0000 4 6 3.5944 1.1456 -0.0005 5 6 4.4040 2.4166 0.0000 6 8 3.5093 3.5603 0.0005 7 6 4.0759 4.7772 0.0005 8 8 5.2795 4.8831 0.0006 9 6 3.2108 6.0111 0.0016 10 6 4.0858 7.2381 0.0020 11 6 4.4082 7.8564 1.1887 12 6 5.2074 8.9889 1.1914 13 6 5.6965 9.5078 0.0023 14 6 5.3923 8.9026 -1.1954 15 6 4.5817 7.7521 -1.2101 16 6 4.2631 7.1212 -2.4348 17 1 4.0162 6.0700 -2.4523 18 6 4.2679 7.8588 -3.6240 19 7 4.0695 9.1516 -3.5927 20 14 4.5575 6.9976 -5.2561 21 1 4.5139 7.9941 -6.3563 22 1 5.8875 6.3372 -5.2382 23 1 3.5008 5.9766 -5.4715 24 7 4.1964 -0.0330 -0.0065 25 6 3.4957 -1.1491 -0.0010 26 7 2.1776 -1.1406 -0.0005 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8899 0.5137 30 1 1.6899 2.1419 0.0007 31 1 5.0322 2.4476 -0.8902 32 1 5.0328 2.4464 0.8898 33 1 2.5822 6.0132 0.8920 34 1 2.5809 6.0139 -0.8879 35 1 4.0331 7.4604 2.1209 36 1 5.4512 9.4705 2.1268 37 1 6.3187 10.3905 0.0161 38 1 5.7747 9.3082 -2.1203 39 1 3.8356 9.5862 -2.7577 40 1 4.0152 -2.0960 -0.0017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777052731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:26 Heat of formation + Delta-G solvation = -47.052173 kcal Electronic energy + Delta-G solvation = -24543.964106 eV Core-core repulsion = 20901.512575 eV Total energy + Delta-G solvation = -3642.451531 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24250 -41.49074 -39.65901 -37.69105 -35.76923 -35.65344 -34.05485 -33.62554 -31.13942 -30.25354 -29.07964 -28.07051 -26.83773 -25.21340 -23.15524 -22.85164 -22.56002 -21.34337 -19.65253 -18.99335 -18.18640 -17.99141 -17.82324 -16.87650 -16.52624 -16.42509 -16.38231 -15.98321 -15.93732 -15.46364 -14.74274 -14.65546 -14.23779 -14.17198 -13.89830 -13.79151 -13.74740 -13.47209 -13.06859 -13.01816 -12.90266 -12.63657 -12.27136 -12.18361 -11.99732 -11.92559 -11.53903 -11.52116 -11.30000 -11.24429 -10.86029 -10.54113 -10.38658 -9.49122 -9.46444 -9.09298 -6.43791 -0.19194 -0.08757 0.77032 0.97594 1.26165 1.47492 1.50155 1.61599 1.75520 2.29847 2.62236 2.68982 2.94120 3.07978 3.31665 3.57412 3.78976 3.91808 4.03232 4.04428 4.16074 4.26019 4.31699 4.44979 4.47290 4.54246 4.59321 4.69744 4.73691 4.85400 4.91961 5.05317 5.06006 5.27603 5.31457 5.39941 5.47559 5.77425 5.82020 5.92210 5.94790 6.03792 6.26004 6.42072 6.77961 6.82615 6.98417 6.98532 8.06967 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.003524 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.335320 B = 7943.181972 C = 9023.400320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.174 3.826 3 C -0.210 4.210 4 C 0.164 3.836 5 C 0.117 3.883 6 O -0.351 6.351 7 C 0.471 3.529 8 O -0.528 6.528 9 C -0.038 4.038 10 C -0.205 4.205 11 C -0.072 4.072 12 C -0.251 4.251 13 C -0.092 4.092 14 C -0.244 4.244 15 C 0.089 3.911 16 C -0.543 4.543 17 H 0.070 0.930 18 C 0.008 3.992 19 N -0.816 5.816 20 Si 1.103 2.897 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.254 1.254 24 N -0.542 5.542 25 C 0.299 3.701 26 N -0.537 5.537 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.168 0.832 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.286 0.714 40 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.051 -15.380 5.987 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.028 3.972 3 C -0.232 4.232 4 C 0.019 3.981 5 C 0.042 3.958 6 O -0.268 6.268 7 C 0.315 3.685 8 O -0.415 6.415 9 C -0.075 4.075 10 C -0.206 4.206 11 C -0.090 4.090 12 C -0.270 4.270 13 C -0.110 4.110 14 C -0.264 4.264 15 C 0.086 3.914 16 C -0.571 4.571 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.439 5.439 20 Si 0.921 3.079 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.178 1.178 24 N -0.259 5.259 25 C 0.011 3.989 26 N -0.252 5.252 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.186 0.814 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.149 0.851 34 H 0.127 0.873 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -7.053 -15.889 4.365 17.923 hybrid contribution 0.238 0.830 1.533 1.760 sum -6.815 -15.059 5.898 17.550 Atomic orbital electron populations 1.20927 0.84998 1.05364 1.04918 1.22382 0.99466 0.87459 0.87917 1.22790 0.94905 1.02138 1.03351 1.21086 0.92390 0.92593 0.92000 1.21305 0.90158 0.79854 1.04467 1.86399 1.40939 1.14642 1.84788 1.24466 0.88633 0.84331 0.71053 1.90667 1.17918 1.87172 1.45746 1.20011 0.96128 0.84937 1.06415 1.19424 1.07103 1.00595 0.93505 1.20853 0.96496 0.95100 0.96535 1.20741 1.07928 1.01274 0.97036 1.20938 0.98516 0.98562 0.93034 1.21167 1.06052 1.02276 0.96867 1.17764 0.88981 0.91279 0.93381 1.20583 1.44922 0.98334 0.93286 0.91235 1.28140 0.90339 0.95004 1.07403 1.70554 1.29179 1.11522 1.32689 0.83171 0.78494 0.75555 0.70632 1.19379 1.20017 1.17768 1.67975 1.42960 0.98786 1.16176 1.25552 0.86891 0.96882 0.89555 1.68362 1.10551 1.30900 1.15427 0.88330 0.89244 0.88126 0.81424 0.89328 0.88427 0.85053 0.87259 0.85724 0.86152 0.87202 0.89776 0.90167 0.75445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.22 71.24 0.73 -0.48 16 2 C 0.17 3.37 6.82 42.58 0.29 3.66 16 3 C -0.21 -4.57 9.17 22.44 0.21 -4.36 16 4 C 0.16 4.18 6.82 42.56 0.29 4.47 16 5 C 0.12 3.30 6.03 71.24 0.43 3.73 16 6 O -0.35 -10.54 8.77 -51.44 -0.45 -10.99 16 7 C 0.47 17.43 7.59 71.23 0.54 17.97 16 8 O -0.53 -23.79 15.78 21.95 0.35 -23.44 16 9 C -0.04 -1.36 5.29 29.10 0.15 -1.20 16 10 C -0.20 -9.18 4.43 -19.40 -0.09 -9.27 16 11 C -0.07 -2.97 9.66 22.22 0.21 -2.75 16 12 C -0.25 -10.55 10.05 22.46 0.23 -10.33 16 13 C -0.09 -4.25 10.02 22.22 0.22 -4.02 16 14 C -0.24 -12.79 7.95 22.73 0.18 -12.61 16 15 C 0.09 4.60 5.30 -21.29 -0.11 4.49 16 16 C -0.54 -28.31 8.08 23.46 0.19 -28.12 16 17 H 0.07 3.53 6.73 -2.91 -0.02 3.51 16 18 C 0.01 0.41 4.94 85.25 0.42 0.83 16 19 N -0.82 -43.56 12.31 21.82 0.27 -43.29 16 20 Si 1.10 43.63 30.00 68.60 2.06 45.69 16 21 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 23 H -0.25 -9.04 7.11 99.48 0.71 -8.34 16 24 N -0.54 -13.60 10.38 -188.07 -1.95 -15.55 16 25 C 0.30 6.13 12.29 180.88 2.22 8.35 16 26 N -0.54 -11.36 10.38 -188.06 -1.95 -13.31 16 27 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 0.83 8.10 -2.39 -0.02 0.81 16 30 H 0.17 3.22 7.10 -2.91 -0.02 3.20 16 31 H 0.09 2.67 8.13 -2.39 -0.02 2.66 16 32 H 0.10 2.71 8.13 -2.39 -0.02 2.69 16 33 H 0.13 3.56 8.05 -2.39 -0.02 3.54 16 34 H 0.11 3.93 7.06 -2.39 -0.02 3.92 16 35 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 36 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 37 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.08 4.66 6.49 -2.91 -0.02 4.64 16 39 H 0.29 15.78 6.68 -92.71 -0.62 15.16 16 40 H 0.23 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -66.59 348.60 5.65 -60.94 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 1.22 Total: 29.61 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 6.12 Total: -29.65 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -3.63 Total: -72.15 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.10 Total: -34.43 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.06 Total: 45.69 kcal Total: -66.59 5.65 -60.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777052731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.887 kcal (2) G-P(sol) polarization free energy of solvation -66.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds