Wall clock time and date at job start Fri Apr 10 2020 22:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38362 * 120.40881 * 2 1 4 4 C 1.39335 * 118.42862 * 180.21595 * 3 2 1 5 5 N 1.40142 * 120.42821 * 179.77628 * 4 3 2 6 6 C 1.34774 * 119.99730 * 333.96851 * 5 4 3 7 7 O 1.21285 * 120.00277 * 354.28722 * 6 5 4 8 8 C 1.50704 * 119.99528 * 174.29357 * 6 5 4 9 9 C 1.50703 * 109.46873 * 179.97438 * 8 6 5 10 10 C 1.37641 * 120.12829 * 265.30221 * 9 8 6 11 11 C 1.38618 * 120.24594 * 180.32066 * 10 9 8 12 12 C 1.38659 * 120.50017 * 359.67471 * 11 10 9 13 13 C 1.37599 * 120.25200 * 359.97438 * 12 11 10 14 14 C 1.40696 * 120.12533 * 84.99940 * 9 8 6 15 15 C 1.41395 * 120.24406 * 359.97438 * 14 9 8 16 16 H 1.07991 * 120.00237 * 334.62002 * 15 14 9 17 17 C 1.39949 * 119.99869 * 154.61742 * 15 14 9 18 18 N 1.30823 * 120.00087 * 334.90094 * 17 15 14 19 19 Si 1.86796 * 120.00017 * 154.90068 * 17 15 14 20 20 H 1.48502 * 109.47090 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.47387 * 299.99786 * 19 17 15 22 22 H 1.48500 * 109.47173 * 60.00003 * 19 17 15 23 23 C 1.38705 * 119.14618 * 359.49980 * 4 3 2 24 24 N 1.31919 * 120.73430 * 0.25700 * 23 4 3 25 25 C 1.32237 * 121.72073 * 359.97438 * 24 23 4 26 26 O 1.35750 * 119.61015 * 180.02562 * 25 24 23 27 27 H 1.09001 * 109.47388 * 270.28652 * 1 2 3 28 28 H 1.09007 * 109.47146 * 30.28492 * 1 2 3 29 29 H 1.09003 * 109.47694 * 150.28438 * 1 2 3 30 30 H 1.07998 * 120.78387 * 359.96775 * 3 2 1 31 31 H 0.97002 * 119.99363 * 153.96447 * 5 4 3 32 32 H 1.08994 * 109.47472 * 59.99882 * 8 6 5 33 33 H 1.08997 * 109.47258 * 299.99533 * 8 6 5 34 34 H 1.07998 * 119.87421 * 0.02562 * 10 9 8 35 35 H 1.08000 * 119.74873 * 179.69904 * 11 10 9 36 36 H 1.08001 * 119.87170 * 180.02562 * 12 11 10 37 37 H 1.07996 * 120.12728 * 180.02562 * 13 12 11 38 38 H 0.97002 * 119.99855 * 354.79514 * 18 17 15 39 39 H 1.07995 * 119.63384 * 180.27579 * 23 4 3 40 40 H 0.96698 * 113.99784 * 89.99770 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2073 1.1933 0.0000 4 6 3.5998 1.1451 -0.0046 5 7 4.3508 2.3283 -0.0095 6 6 3.8248 3.4582 -0.5222 7 8 2.7442 3.4289 -1.0723 8 6 4.5794 4.7581 -0.4122 9 6 3.7801 5.8593 -1.0601 10 6 4.0176 6.2059 -2.3708 11 6 3.2884 7.2229 -2.9671 12 6 2.3086 7.8974 -2.2547 13 6 2.0492 7.5628 -0.9454 14 6 2.7840 6.5326 -0.3294 15 6 2.5265 6.1803 1.0155 16 1 2.7597 5.1864 1.3676 17 6 1.9695 7.1198 1.8906 18 7 2.1298 8.3986 1.6659 19 14 0.9970 6.5478 3.3793 20 1 0.5161 7.7290 4.1401 21 1 -0.1666 5.7415 2.9307 22 1 1.8677 5.7183 4.2505 23 6 4.2331 -0.0889 0.0015 24 7 3.5321 -1.2064 0.0066 25 6 2.2098 -1.1977 0.0064 26 8 1.5313 -2.3734 0.0123 27 1 -0.3634 0.0051 1.0276 28 1 -0.3634 0.8875 -0.5183 29 1 -0.3634 -0.8925 -0.5094 30 1 1.6869 2.1396 -0.0005 31 1 5.2493 2.3338 0.3562 32 1 5.5415 4.6635 -0.9155 33 1 4.7412 4.9964 0.6390 34 1 4.7781 5.6869 -2.9352 35 1 3.4847 7.4916 -3.9946 36 1 1.7463 8.6878 -2.7295 37 1 1.2853 8.0892 -0.3926 38 1 2.6969 8.6956 0.9371 39 1 5.3120 -0.1353 0.0025 40 1 1.3347 -2.7097 0.8973 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777063437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:29 Heat of formation + Delta-G solvation = -30.759451 kcal Electronic energy + Delta-G solvation = -25088.599108 eV Core-core repulsion = 21446.854083 eV Total energy + Delta-G solvation = -3641.745025 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91204 -39.46679 -37.80063 -36.93639 -34.54313 -33.92470 -33.62028 -32.03885 -29.67583 -29.26537 -27.33583 -26.80714 -25.00556 -23.64742 -22.27732 -21.00412 -20.75715 -19.75731 -18.82996 -17.96068 -17.46741 -16.84183 -16.17423 -16.03260 -15.16586 -14.93862 -14.28416 -14.26240 -14.11698 -13.76621 -13.62239 -13.47159 -13.12770 -12.87380 -12.72317 -12.38860 -12.10066 -12.01487 -11.85969 -11.76861 -11.39349 -11.27442 -10.92847 -10.68182 -10.53799 -10.44661 -9.85016 -9.73535 -9.45095 -9.41557 -9.10996 -9.02497 -8.05590 -7.63504 -7.57653 -7.19262 -4.50224 0.91538 1.23191 2.63307 2.79010 2.93260 3.10492 3.20309 3.24237 3.31368 3.53049 3.82594 3.96325 4.51922 4.58026 4.80399 4.94190 5.01115 5.24280 5.36274 5.51301 5.54926 5.63141 5.77545 5.85910 5.90764 6.08175 6.10110 6.13735 6.21633 6.29779 6.31783 6.60925 6.74420 6.93599 7.13433 7.33710 7.41968 7.47488 7.64576 7.75450 7.78187 7.85516 7.89219 8.13427 8.27267 8.43995 8.70433 8.85491 10.01017 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.004259 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.116311 B = 6573.146912 C = 7657.735768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.123 4.123 3 C -0.079 4.079 4 C 0.112 3.888 5 N -0.678 5.678 6 C 0.514 3.486 7 O -0.496 6.496 8 C -0.067 4.067 9 C -0.192 4.192 10 C -0.066 4.066 11 C -0.252 4.252 12 C -0.084 4.084 13 C -0.216 4.216 14 C 0.117 3.883 15 C -0.517 4.517 16 H 0.071 0.929 17 C 0.041 3.959 18 N -0.796 5.796 19 Si 1.058 2.942 20 H -0.273 1.273 21 H -0.274 1.274 22 H -0.277 1.277 23 C 0.077 3.923 24 N -0.480 5.480 25 C 0.271 3.729 26 O -0.480 6.480 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.162 0.838 31 H 0.411 0.589 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.300 0.700 39 H 0.160 0.840 40 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.702 -12.513 2.192 12.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.126 4.126 3 C -0.107 4.107 4 C 0.013 3.987 5 N -0.324 5.324 6 C 0.303 3.697 7 O -0.368 6.368 8 C -0.106 4.106 9 C -0.193 4.193 10 C -0.084 4.084 11 C -0.272 4.272 12 C -0.103 4.103 13 C -0.235 4.235 14 C 0.114 3.886 15 C -0.545 4.545 16 H 0.089 0.911 17 C -0.181 4.181 18 N -0.419 5.419 19 Si 0.882 3.118 20 H -0.198 1.198 21 H -0.200 1.200 22 H -0.202 1.202 23 C -0.083 4.083 24 N -0.197 5.197 25 C 0.091 3.909 26 O -0.285 6.285 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.180 0.820 31 H 0.247 0.753 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.177 0.823 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 1.449 -12.595 2.466 12.916 hybrid contribution 0.974 0.117 -0.783 1.255 sum 2.423 -12.479 1.683 12.823 Atomic orbital electron populations 1.20684 0.89568 1.03757 1.02653 1.20871 0.98162 0.92131 1.01478 1.21807 0.92472 0.99679 0.96735 1.18939 0.92115 0.87540 1.00060 1.43866 1.18811 1.07861 1.61893 1.21634 0.86996 0.84747 0.76353 1.90667 1.21108 1.85188 1.39818 1.20263 0.97423 0.89439 1.03519 1.18940 1.02167 1.02935 0.95290 1.20368 0.97913 0.96323 0.93836 1.20277 1.04410 1.03570 0.98919 1.20628 0.96974 0.97971 0.94694 1.21156 1.03294 1.04100 0.94965 1.17380 0.88251 0.90123 0.92818 1.20430 1.38436 1.00638 0.95044 0.91081 1.26919 0.95346 0.93114 1.02757 1.70459 1.27264 1.16110 1.28106 0.83726 0.76956 0.76617 0.74469 1.19769 1.19990 1.20211 1.22127 0.99682 0.85233 1.01276 1.67030 1.08262 1.31241 1.13178 1.18849 0.86622 0.85021 1.00367 1.84791 1.73700 1.36636 1.33416 0.90885 0.90719 0.90591 0.82015 0.75311 0.90080 0.88041 0.89541 0.89379 0.89310 0.87670 0.88614 0.82322 0.75106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.81 36.00 0.35 -0.90 16 2 C -0.12 -1.71 5.91 -104.35 -0.62 -2.33 16 3 C -0.08 -1.26 8.49 -39.13 -0.33 -1.59 16 4 C 0.11 1.61 6.43 -83.48 -0.54 1.07 16 5 N -0.68 -9.22 5.38 -9.74 -0.05 -9.27 16 6 C 0.51 9.18 7.27 -10.98 -0.08 9.10 16 7 O -0.50 -10.92 13.32 5.55 0.07 -10.84 16 8 C -0.07 -1.19 5.18 -29.03 -0.15 -1.34 16 9 C -0.19 -4.33 4.43 -103.91 -0.46 -4.79 16 10 C -0.07 -1.45 9.66 -39.66 -0.38 -1.83 16 11 C -0.25 -5.62 10.05 -39.29 -0.39 -6.01 16 12 C -0.08 -1.96 10.02 -39.66 -0.40 -2.35 16 13 C -0.22 -5.48 7.93 -38.87 -0.31 -5.78 16 14 C 0.12 2.96 5.31 -106.82 -0.57 2.39 16 15 C -0.52 -12.93 8.09 -37.74 -0.31 -13.24 16 16 H 0.07 1.72 6.72 -52.49 -0.35 1.37 16 17 C 0.04 1.00 4.95 -17.34 -0.09 0.91 16 18 N -0.80 -20.42 12.32 55.55 0.68 -19.74 16 19 Si 1.06 21.09 30.00 -169.99 -5.10 15.99 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 23 C 0.08 0.99 11.09 -17.34 -0.19 0.79 16 24 N -0.48 -6.86 10.38 -13.17 -0.14 -7.00 16 25 C 0.27 3.75 7.72 -17.14 -0.13 3.61 16 26 O -0.48 -5.53 12.62 -18.96 -0.24 -5.77 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 29 H 0.08 0.79 7.54 -51.93 -0.39 0.40 16 30 H 0.16 2.96 6.00 -52.49 -0.31 2.64 16 31 H 0.41 3.90 8.80 -40.82 -0.36 3.55 16 32 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 33 H 0.10 1.78 7.05 -51.93 -0.37 1.41 16 34 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.11 2.75 6.45 -52.49 -0.34 2.42 16 38 H 0.30 7.88 6.60 -40.82 -0.27 7.61 16 39 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 40 H 0.39 2.53 9.06 45.56 0.41 2.95 16 LS Contribution 342.43 15.07 5.16 5.16 Total: -1.00 -31.70 342.43 -7.93 -39.63 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -3.73 Total: 14.13 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -4.59 Total: -22.29 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.50 Total: -36.01 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.17 Total: -16.61 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.10 Total: 15.99 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.70 -7.93 -39.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777063437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.870 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds