Wall clock time and date at job start Fri Apr 10 2020 22:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38362 * 120.40881 * 2 1 4 4 C 1.39335 * 118.42862 * 180.21595 * 3 2 1 5 5 N 1.40142 * 120.42821 * 179.77628 * 4 3 2 6 6 C 1.34774 * 119.99730 * 333.96851 * 5 4 3 7 7 O 1.21285 * 120.00277 * 354.28722 * 6 5 4 8 8 C 1.50704 * 119.99528 * 174.29357 * 6 5 4 9 9 C 1.50703 * 109.46873 * 179.97438 * 8 6 5 10 10 C 1.37641 * 120.12829 * 265.30221 * 9 8 6 11 11 C 1.38618 * 120.24594 * 180.32066 * 10 9 8 12 12 C 1.38659 * 120.50017 * 359.67471 * 11 10 9 13 13 C 1.37599 * 120.25200 * 359.97438 * 12 11 10 14 14 C 1.40696 * 120.12533 * 84.99940 * 9 8 6 15 15 C 1.41395 * 120.24406 * 359.97438 * 14 9 8 16 16 H 1.07991 * 120.00237 * 334.62002 * 15 14 9 17 17 C 1.39949 * 119.99869 * 154.61742 * 15 14 9 18 18 N 1.30823 * 120.00087 * 334.90094 * 17 15 14 19 19 Si 1.86796 * 120.00017 * 154.90068 * 17 15 14 20 20 H 1.48502 * 109.47090 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.47387 * 299.99786 * 19 17 15 22 22 H 1.48500 * 109.47173 * 60.00003 * 19 17 15 23 23 C 1.38705 * 119.14618 * 359.49980 * 4 3 2 24 24 N 1.31919 * 120.73430 * 0.25700 * 23 4 3 25 25 C 1.32237 * 121.72073 * 359.97438 * 24 23 4 26 26 O 1.35750 * 119.61015 * 180.02562 * 25 24 23 27 27 H 1.09001 * 109.47388 * 270.28652 * 1 2 3 28 28 H 1.09007 * 109.47146 * 30.28492 * 1 2 3 29 29 H 1.09003 * 109.47694 * 150.28438 * 1 2 3 30 30 H 1.07998 * 120.78387 * 359.96775 * 3 2 1 31 31 H 0.97002 * 119.99363 * 153.96447 * 5 4 3 32 32 H 1.08994 * 109.47472 * 59.99882 * 8 6 5 33 33 H 1.08997 * 109.47258 * 299.99533 * 8 6 5 34 34 H 1.07998 * 119.87421 * 0.02562 * 10 9 8 35 35 H 1.08000 * 119.74873 * 179.69904 * 11 10 9 36 36 H 1.08001 * 119.87170 * 180.02562 * 12 11 10 37 37 H 1.07996 * 120.12728 * 180.02562 * 13 12 11 38 38 H 0.97002 * 119.99855 * 354.79514 * 18 17 15 39 39 H 1.07995 * 119.63384 * 180.27579 * 23 4 3 40 40 H 0.96698 * 113.99784 * 89.99770 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2073 1.1933 0.0000 4 6 3.5998 1.1451 -0.0046 5 7 4.3508 2.3283 -0.0095 6 6 3.8248 3.4582 -0.5222 7 8 2.7442 3.4289 -1.0723 8 6 4.5794 4.7581 -0.4122 9 6 3.7801 5.8593 -1.0601 10 6 4.0176 6.2059 -2.3708 11 6 3.2884 7.2229 -2.9671 12 6 2.3086 7.8974 -2.2547 13 6 2.0492 7.5628 -0.9454 14 6 2.7840 6.5326 -0.3294 15 6 2.5265 6.1803 1.0155 16 1 2.7597 5.1864 1.3676 17 6 1.9695 7.1198 1.8906 18 7 2.1298 8.3986 1.6659 19 14 0.9970 6.5478 3.3793 20 1 0.5161 7.7290 4.1401 21 1 -0.1666 5.7415 2.9307 22 1 1.8677 5.7183 4.2505 23 6 4.2331 -0.0889 0.0015 24 7 3.5321 -1.2064 0.0066 25 6 2.2098 -1.1977 0.0064 26 8 1.5313 -2.3734 0.0123 27 1 -0.3634 0.0051 1.0276 28 1 -0.3634 0.8875 -0.5183 29 1 -0.3634 -0.8925 -0.5094 30 1 1.6869 2.1396 -0.0005 31 1 5.2493 2.3338 0.3562 32 1 5.5415 4.6635 -0.9155 33 1 4.7412 4.9964 0.6390 34 1 4.7781 5.6869 -2.9352 35 1 3.4847 7.4916 -3.9946 36 1 1.7463 8.6878 -2.7295 37 1 1.2853 8.0892 -0.3926 38 1 2.6969 8.6956 0.9371 39 1 5.3120 -0.1353 0.0025 40 1 1.3347 -2.7097 0.8973 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777063437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:29 Heat of formation + Delta-G solvation = -53.474211 kcal Electronic energy + Delta-G solvation = -25089.584094 eV Core-core repulsion = 21446.854083 eV Total energy + Delta-G solvation = -3642.730011 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.04815 -40.77266 -39.44788 -38.02025 -35.79272 -35.72779 -34.65596 -33.63686 -31.12495 -30.86137 -28.50064 -28.18657 -26.81015 -24.78746 -23.42728 -22.82330 -22.17377 -21.27509 -19.81706 -19.66971 -18.75469 -18.03122 -17.33566 -17.15146 -16.76058 -16.55182 -15.98265 -15.68157 -15.35189 -15.27669 -15.03801 -14.53262 -14.27153 -14.17666 -13.91730 -13.84495 -13.74022 -13.55635 -13.02266 -13.00276 -12.79165 -12.70311 -12.62026 -12.25061 -12.00320 -11.89668 -11.50003 -11.22042 -11.15827 -10.84456 -10.54212 -10.27511 -9.45363 -9.43102 -9.14412 -9.06061 -6.40352 -0.13816 0.12274 0.88787 0.99036 1.46933 1.60884 1.62046 1.74854 2.00196 2.30496 2.53372 2.71691 2.80365 3.49389 3.64381 3.79677 3.88824 3.92450 4.06039 4.28819 4.35505 4.42856 4.48690 4.56514 4.61832 4.71039 4.71262 4.86666 4.96172 5.04893 5.07684 5.12684 5.25941 5.32181 5.49515 5.64492 5.79178 5.84047 5.97988 6.05589 6.28541 6.39329 6.45783 6.61071 6.85029 6.85830 7.02329 7.16661 8.09077 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.004259 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.116311 B = 6573.146912 C = 7657.735768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.130 4.130 3 C -0.100 4.100 4 C 0.097 3.903 5 N -0.656 5.656 6 C 0.517 3.483 7 O -0.546 6.546 8 C -0.066 4.066 9 C -0.193 4.193 10 C -0.078 4.078 11 C -0.252 4.252 12 C -0.096 4.096 13 C -0.246 4.246 14 C 0.088 3.912 15 C -0.539 4.539 16 H 0.071 0.929 17 C 0.006 3.994 18 N -0.820 5.820 19 Si 1.103 2.897 20 H -0.272 1.272 21 H -0.274 1.274 22 H -0.252 1.252 23 C 0.093 3.907 24 N -0.495 5.495 25 C 0.275 3.725 26 O -0.483 6.483 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.131 0.869 31 H 0.432 0.568 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.285 0.715 39 H 0.198 0.802 40 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.320 -14.902 2.288 15.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.134 4.134 3 C -0.128 4.128 4 C -0.001 4.001 5 N -0.304 5.304 6 C 0.307 3.693 7 O -0.421 6.421 8 C -0.105 4.105 9 C -0.194 4.194 10 C -0.096 4.096 11 C -0.271 4.271 12 C -0.115 4.115 13 C -0.265 4.265 14 C 0.086 3.914 15 C -0.567 4.567 16 H 0.089 0.911 17 C -0.211 4.211 18 N -0.444 5.444 19 Si 0.921 3.079 20 H -0.196 1.196 21 H -0.199 1.199 22 H -0.176 1.176 23 C -0.067 4.067 24 N -0.212 5.212 25 C 0.095 3.905 26 O -0.292 6.292 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.149 0.851 31 H 0.272 0.728 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.215 0.785 40 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 3.111 -15.026 2.592 15.562 hybrid contribution 0.511 0.757 -0.951 1.319 sum 3.622 -14.269 1.641 14.813 Atomic orbital electron populations 1.20705 0.88246 1.03586 1.03788 1.21039 0.99258 0.91720 1.01385 1.21700 0.93592 0.99152 0.98396 1.19030 0.91674 0.88220 1.01184 1.43476 1.19508 1.06627 1.60765 1.21485 0.86189 0.85637 0.76015 1.90669 1.23089 1.85989 1.42380 1.20291 0.98412 0.88054 1.03747 1.19452 1.01179 1.03127 0.95677 1.20821 0.98567 0.96296 0.93889 1.20710 1.03357 1.02936 1.00129 1.20900 0.97696 0.98727 0.94147 1.21160 1.03952 1.05359 0.96071 1.17755 0.89299 0.90805 0.93569 1.20544 1.40007 1.00729 0.95442 0.91058 1.28151 0.95372 0.92686 1.04864 1.70559 1.28502 1.16944 1.28376 0.83177 0.76156 0.76513 0.72020 1.19644 1.19899 1.17637 1.22642 1.01217 0.83926 0.98936 1.67161 1.08506 1.31701 1.13860 1.18947 0.86724 0.85478 0.99309 1.84733 1.73366 1.35611 1.35526 0.89067 0.92120 0.89417 0.85082 0.72761 0.85910 0.87800 0.86155 0.86553 0.87510 0.89914 0.90255 0.78547 0.72397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 9.81 71.23 0.70 -1.66 16 2 C -0.13 -3.54 5.91 -19.69 -0.12 -3.66 16 3 C -0.10 -3.19 8.49 22.56 0.19 -3.00 16 4 C 0.10 2.63 6.43 38.19 0.25 2.88 16 5 N -0.66 -16.51 5.38 -303.11 -1.63 -18.14 16 6 C 0.52 17.97 7.27 87.66 0.64 18.60 16 7 O -0.55 -24.34 13.32 -3.05 -0.04 -24.38 16 8 C -0.07 -2.23 5.18 29.10 0.15 -2.08 16 9 C -0.19 -8.62 4.43 -19.40 -0.09 -8.70 16 10 C -0.08 -3.27 9.66 22.22 0.21 -3.05 16 11 C -0.25 -10.91 10.05 22.46 0.23 -10.68 16 12 C -0.10 -4.54 10.02 22.22 0.22 -4.32 16 13 C -0.25 -13.01 7.93 22.73 0.18 -12.83 16 14 C 0.09 4.59 5.31 -21.29 -0.11 4.47 16 15 C -0.54 -27.77 8.09 23.46 0.19 -27.58 16 16 H 0.07 3.55 6.72 -2.92 -0.02 3.53 16 17 C 0.01 0.29 4.95 85.26 0.42 0.71 16 18 N -0.82 -43.90 12.32 21.83 0.27 -43.63 16 19 Si 1.10 43.16 30.00 68.60 2.06 45.22 16 20 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 22 H -0.25 -8.81 7.11 99.48 0.71 -8.11 16 23 C 0.09 2.10 11.09 84.79 0.94 3.04 16 24 N -0.49 -12.86 10.38 -308.42 -3.20 -16.06 16 25 C 0.27 7.06 7.72 84.78 0.65 7.71 16 26 O -0.48 -9.96 12.62 -90.75 -1.14 -11.11 16 27 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 1.51 8.10 -2.38 -0.02 1.49 16 29 H 0.09 1.71 7.54 -2.39 -0.02 1.70 16 30 H 0.13 5.04 6.00 -2.91 -0.02 5.02 16 31 H 0.43 6.80 8.80 -92.71 -0.82 5.99 16 32 H 0.12 3.10 8.05 -2.39 -0.02 3.08 16 33 H 0.10 3.51 7.05 -2.39 -0.02 3.49 16 34 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.08 4.63 6.45 -2.91 -0.02 4.61 16 38 H 0.29 15.84 6.60 -92.71 -0.61 15.23 16 39 H 0.20 2.80 8.06 -2.91 -0.02 2.77 16 40 H 0.42 4.20 9.06 -74.06 -0.67 3.53 16 Total: -1.00 -71.75 342.43 0.75 -71.00 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: -0.22 Total: 37.23 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 4.66 Total: -40.15 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -4.56 Total: -77.82 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -1.19 Total: -35.48 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.06 Total: 45.22 kcal Total: -71.75 0.75 -71.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777063437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.528 kcal (2) G-P(sol) polarization free energy of solvation -71.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds