Wall clock time and date at job start Fri Apr 10 2020 22:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81407 * 103.00204 * 2 1 4 4 H 1.09000 * 109.46643 * 54.99829 * 3 2 1 5 5 C 1.53003 * 109.47122 * 295.00346 * 3 2 1 6 6 C 1.52996 * 109.47062 * 175.00164 * 3 2 1 7 7 N 1.46498 * 109.47059 * 299.99832 * 6 3 2 8 8 C 1.34777 * 119.99828 * 179.72339 * 7 6 3 9 9 O 1.21593 * 119.99949 * 0.28071 * 8 7 6 10 10 N 1.34777 * 120.00128 * 180.27942 * 8 7 6 11 11 C 1.40198 * 120.00325 * 180.02562 * 10 8 7 12 12 C 1.40406 * 125.96684 * 359.71349 * 11 10 8 13 13 C 1.35246 * 107.86201 * 179.83172 * 12 11 10 14 14 C 1.50704 * 126.07120 * 180.15652 * 13 12 11 15 15 N 1.34968 * 107.85913 * 0.42840 * 13 12 11 16 16 C 1.46498 * 125.97448 * 179.71236 * 15 13 12 17 17 C 1.50706 * 109.46661 * 269.99767 * 16 15 13 18 18 H 1.07999 * 120.00070 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99592 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00304 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99595 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46993 * 89.99970 * 21 19 17 23 23 H 1.48502 * 109.47331 * 209.99428 * 21 19 17 24 24 H 1.48500 * 109.47442 * 330.00178 * 21 19 17 25 25 N 1.31199 * 125.97629 * 180.02562 * 11 10 8 26 26 H 1.09007 * 109.46936 * 299.99880 * 1 2 3 27 27 H 1.09004 * 109.47343 * 59.99362 * 1 2 3 28 28 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47245 * 59.99407 * 5 3 2 30 30 H 1.08990 * 109.47021 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.46620 * 300.00001 * 5 3 2 32 32 H 1.09004 * 109.47066 * 180.02562 * 6 3 2 33 33 H 1.08994 * 109.46974 * 60.00247 * 6 3 2 34 34 H 0.97001 * 120.00384 * 0.02562 * 7 6 3 35 35 H 0.97000 * 119.99549 * 359.97438 * 10 8 7 36 36 H 1.07995 * 126.07064 * 359.97438 * 12 11 10 37 37 H 1.09002 * 109.47194 * 270.32266 * 14 13 12 38 38 H 1.09003 * 109.46867 * 30.31659 * 14 13 12 39 39 H 1.08995 * 109.47130 * 150.31722 * 14 13 12 40 40 H 1.08995 * 109.47476 * 29.99553 * 16 15 13 41 41 H 1.08998 * 109.47168 * 150.00266 * 16 15 13 42 42 H 0.96997 * 120.00092 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4017 -1.3073 6 6 3.7370 1.9412 0.1257 7 7 4.1959 1.3340 1.3775 8 6 5.5043 1.3614 1.6997 9 8 6.3031 1.8944 0.9538 10 7 5.9273 0.7979 2.8486 11 6 7.2883 0.8267 3.1841 12 6 8.3146 1.4009 2.4171 13 6 9.4784 1.2246 3.0831 14 6 10.8393 1.6864 2.6292 15 7 9.2056 0.5564 4.2236 16 6 10.1815 0.1519 5.2385 17 6 10.7086 -1.2211 4.9094 18 1 10.3520 -1.7405 4.0323 19 6 11.6455 -1.8144 5.7288 20 7 12.0794 -1.1821 6.7973 21 14 12.2983 -3.5165 5.3213 22 1 13.4985 -3.3921 4.4556 23 1 12.6645 -4.2200 6.5768 24 1 11.2512 -4.2905 4.6074 25 7 7.8262 0.3170 4.2667 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 0.6635 2.2779 -1.3969 30 1 1.9876 3.4637 -1.3071 31 1 2.2354 1.9150 -2.1491 32 1 3.9822 3.0033 0.1261 33 1 4.2295 1.4546 -0.7161 34 1 3.5587 0.9085 1.9723 35 1 5.2900 0.3730 3.4438 36 1 8.1956 1.8974 1.4655 37 1 11.3070 0.9050 2.0301 38 1 10.7348 2.5905 2.0294 39 1 11.4603 1.8976 3.4997 40 1 11.0066 0.8639 5.2534 41 1 9.7012 0.1318 6.2168 42 1 12.7381 -1.5998 7.3739 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272117708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:39 Heat of formation + Delta-G solvation = 43.032579 kcal Electronic energy + Delta-G solvation = -22927.966764 eV Core-core repulsion = 19457.158304 eV Total energy + Delta-G solvation = -3470.808460 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.70712 -39.59086 -36.31792 -34.66989 -33.44558 -32.90084 -31.30172 -30.70889 -29.31639 -27.02930 -26.33356 -26.04039 -23.08860 -22.45083 -21.48660 -19.81997 -19.50307 -17.77030 -17.01377 -16.64650 -16.52208 -15.80245 -15.51057 -15.06035 -14.88355 -14.59899 -14.20486 -14.11434 -13.97199 -13.77903 -13.17486 -13.11353 -12.91008 -12.74367 -12.43714 -12.22891 -12.16358 -11.93056 -11.63836 -11.61265 -11.35347 -11.05846 -10.79558 -10.40275 -10.26833 -10.21295 -9.96984 -9.61410 -9.49498 -9.20044 -8.60820 -8.11927 -7.85473 -7.34630 -6.21839 -4.29140 1.18534 2.10409 2.42100 2.70599 3.15605 3.24042 3.30312 3.36242 3.63758 3.89810 4.13941 4.25824 4.35169 4.48240 4.66521 4.68411 4.72837 5.08792 5.11785 5.14287 5.28724 5.33600 5.45257 5.52020 5.63255 5.76592 5.97414 6.16408 6.24314 6.28755 6.51232 6.64696 6.67876 6.99484 7.10073 7.19130 7.58437 7.71306 7.93189 8.00323 8.12537 8.64559 8.72915 8.80769 9.36953 10.85303 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.002451 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.770770 B =11421.562089 C =12122.519221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.244 6.244 3 C -0.074 4.074 4 H 0.094 0.906 5 C -0.146 4.146 6 C 0.161 3.839 7 N -0.743 5.743 8 C 0.714 3.286 9 O -0.568 6.568 10 N -0.643 5.643 11 C 0.283 3.717 12 C -0.289 4.289 13 C 0.090 3.910 14 C -0.083 4.083 15 N -0.319 5.319 16 C 0.259 3.741 17 C -0.534 4.534 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.893 5.893 21 Si 0.906 3.094 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.272 1.272 25 N -0.324 5.324 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.401 0.599 35 H 0.406 0.594 36 H 0.160 0.840 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.500 7.504 -13.451 26.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.019 6.019 3 C -0.203 4.203 4 H 0.113 0.887 5 C -0.205 4.205 6 C 0.036 3.964 7 N -0.401 5.401 8 C 0.413 3.587 9 O -0.443 6.443 10 N -0.293 5.293 11 C 0.029 3.971 12 C -0.320 4.320 13 C -0.041 4.041 14 C -0.141 4.141 15 N -0.101 5.101 16 C 0.141 3.859 17 C -0.573 4.573 18 H 0.082 0.918 19 C -0.138 4.138 20 N -0.531 5.531 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.197 1.197 25 N -0.154 5.154 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.236 0.764 35 H 0.241 0.759 36 H 0.178 0.822 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.116 6.452 -12.802 24.702 hybrid contribution -1.103 -0.082 -0.115 1.112 sum -21.220 6.370 -12.917 25.646 Atomic orbital electron populations 1.23439 0.94590 1.06601 1.04900 1.87299 1.06809 1.09998 1.97768 1.23487 0.99319 0.94996 1.02496 0.88724 1.22014 1.01496 1.01402 0.95592 1.20961 0.89743 0.99208 0.86499 1.45028 1.06763 1.63718 1.24580 1.15578 0.82421 0.79478 0.81182 1.90872 1.52777 1.49381 1.51269 1.41366 1.05831 1.59853 1.22217 1.18660 0.83458 1.00172 0.94787 1.21229 0.89292 1.16257 1.05211 1.21057 0.97054 0.97245 0.88782 1.20324 0.91025 1.01076 1.01723 1.48951 1.03782 1.40241 1.17156 1.19666 0.84289 0.96415 0.85501 1.21337 1.23857 1.00962 1.11099 0.91757 1.24928 0.95895 0.98455 0.94555 1.69920 1.30737 1.38344 1.14069 0.86359 0.79209 0.83250 0.77899 1.20312 1.20913 1.19694 1.77244 0.90541 1.26980 1.20679 0.90487 0.90413 0.88030 0.92007 0.91068 0.90761 0.89826 0.90381 0.76422 0.75904 0.82248 0.90473 0.90859 0.90922 0.92831 0.93060 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.61 10.45 101.05 1.06 0.45 16 2 S -0.24 -1.89 20.99 -107.50 -2.26 -4.14 16 3 C -0.07 -0.46 2.93 -26.73 -0.08 -0.54 16 4 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 5 C -0.15 -0.69 9.10 37.16 0.34 -0.36 16 6 C 0.16 1.43 5.12 -4.04 -0.02 1.41 16 7 N -0.74 -7.90 5.27 -65.23 -0.34 -8.24 16 8 C 0.71 10.97 8.53 -86.92 -0.74 10.23 16 9 O -0.57 -10.60 13.47 5.28 0.07 -10.53 16 10 N -0.64 -10.48 5.46 -15.51 -0.08 -10.57 16 11 C 0.28 5.96 8.11 -154.37 -1.25 4.71 16 12 C -0.29 -6.16 9.52 -39.83 -0.38 -6.54 16 13 C 0.09 1.95 6.93 -82.28 -0.57 1.38 16 14 C -0.08 -1.46 10.11 36.01 0.36 -1.10 16 15 N -0.32 -7.75 3.59 -58.32 -0.21 -7.96 16 16 C 0.26 6.76 5.99 -5.19 -0.03 6.73 16 17 C -0.53 -14.95 9.39 -34.43 -0.32 -15.27 16 18 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 19 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -25.34 13.29 55.43 0.74 -24.61 16 21 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 N -0.32 -7.67 12.59 31.44 0.40 -7.28 16 26 H 0.08 0.31 8.14 -51.92 -0.42 -0.12 16 27 H 0.08 0.30 7.14 -51.92 -0.37 -0.07 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.24 6.92 -51.93 -0.36 -0.12 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.40 3.42 7.99 -40.82 -0.33 3.09 16 35 H 0.41 5.38 8.84 -40.82 -0.36 5.02 16 36 H 0.16 3.34 5.91 -52.49 -0.31 3.03 16 37 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.28 7.07 -51.93 -0.37 0.91 16 40 H 0.05 1.38 7.04 -51.93 -0.37 1.01 16 41 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -33.54 365.59 -9.17 -42.71 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.23 Total: 5.93 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.73 Total: 2.80 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.49 Total: -58.65 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.07 Total: -10.53 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.89 SS G_CDS: -2.26 Total: -4.14 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.54 -9.17 -42.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272117708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.742 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds