Wall clock time and date at job start Fri Apr 10 2020 22:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81407 * 103.00204 * 2 1 4 4 H 1.09000 * 109.46643 * 54.99829 * 3 2 1 5 5 C 1.53003 * 109.47122 * 295.00346 * 3 2 1 6 6 C 1.52996 * 109.47062 * 175.00164 * 3 2 1 7 7 N 1.46498 * 109.47059 * 299.99832 * 6 3 2 8 8 C 1.34777 * 119.99828 * 179.72339 * 7 6 3 9 9 O 1.21593 * 119.99949 * 0.28071 * 8 7 6 10 10 N 1.34777 * 120.00128 * 180.27942 * 8 7 6 11 11 C 1.40198 * 120.00325 * 180.02562 * 10 8 7 12 12 C 1.40406 * 125.96684 * 359.71349 * 11 10 8 13 13 C 1.35246 * 107.86201 * 179.83172 * 12 11 10 14 14 C 1.50704 * 126.07120 * 180.15652 * 13 12 11 15 15 N 1.34968 * 107.85913 * 0.42840 * 13 12 11 16 16 C 1.46498 * 125.97448 * 179.71236 * 15 13 12 17 17 C 1.50706 * 109.46661 * 269.99767 * 16 15 13 18 18 H 1.07999 * 120.00070 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99592 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00304 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99595 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46993 * 89.99970 * 21 19 17 23 23 H 1.48502 * 109.47331 * 209.99428 * 21 19 17 24 24 H 1.48500 * 109.47442 * 330.00178 * 21 19 17 25 25 N 1.31199 * 125.97629 * 180.02562 * 11 10 8 26 26 H 1.09007 * 109.46936 * 299.99880 * 1 2 3 27 27 H 1.09004 * 109.47343 * 59.99362 * 1 2 3 28 28 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47245 * 59.99407 * 5 3 2 30 30 H 1.08990 * 109.47021 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.46620 * 300.00001 * 5 3 2 32 32 H 1.09004 * 109.47066 * 180.02562 * 6 3 2 33 33 H 1.08994 * 109.46974 * 60.00247 * 6 3 2 34 34 H 0.97001 * 120.00384 * 0.02562 * 7 6 3 35 35 H 0.97000 * 119.99549 * 359.97438 * 10 8 7 36 36 H 1.07995 * 126.07064 * 359.97438 * 12 11 10 37 37 H 1.09002 * 109.47194 * 270.32266 * 14 13 12 38 38 H 1.09003 * 109.46867 * 30.31659 * 14 13 12 39 39 H 1.08995 * 109.47130 * 150.31722 * 14 13 12 40 40 H 1.08995 * 109.47476 * 29.99553 * 16 15 13 41 41 H 1.08998 * 109.47168 * 150.00266 * 16 15 13 42 42 H 0.96997 * 120.00092 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4017 -1.3073 6 6 3.7370 1.9412 0.1257 7 7 4.1959 1.3340 1.3775 8 6 5.5043 1.3614 1.6997 9 8 6.3031 1.8944 0.9538 10 7 5.9273 0.7979 2.8486 11 6 7.2883 0.8267 3.1841 12 6 8.3146 1.4009 2.4171 13 6 9.4784 1.2246 3.0831 14 6 10.8393 1.6864 2.6292 15 7 9.2056 0.5564 4.2236 16 6 10.1815 0.1519 5.2385 17 6 10.7086 -1.2211 4.9094 18 1 10.3520 -1.7405 4.0323 19 6 11.6455 -1.8144 5.7288 20 7 12.0794 -1.1821 6.7973 21 14 12.2983 -3.5165 5.3213 22 1 13.4985 -3.3921 4.4556 23 1 12.6645 -4.2200 6.5768 24 1 11.2512 -4.2905 4.6074 25 7 7.8262 0.3170 4.2667 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 0.6635 2.2779 -1.3969 30 1 1.9876 3.4637 -1.3071 31 1 2.2354 1.9150 -2.1491 32 1 3.9822 3.0033 0.1261 33 1 4.2295 1.4546 -0.7161 34 1 3.5587 0.9085 1.9723 35 1 5.2900 0.3730 3.4438 36 1 8.1956 1.8974 1.4655 37 1 11.3070 0.9050 2.0301 38 1 10.7348 2.5905 2.0294 39 1 11.4603 1.8976 3.4997 40 1 11.0066 0.8639 5.2534 41 1 9.7012 0.1318 6.2168 42 1 12.7381 -1.5998 7.3739 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272117708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:38 Heat of formation + Delta-G solvation = 21.304707 kcal Electronic energy + Delta-G solvation = -22928.908956 eV Core-core repulsion = 19457.158304 eV Total energy + Delta-G solvation = -3471.750652 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.29723 -40.94385 -37.21973 -36.18249 -35.30451 -33.89873 -32.82692 -32.51540 -29.74299 -28.65136 -27.86581 -27.15641 -24.94489 -23.21399 -22.75107 -21.30483 -21.05677 -19.07976 -18.76088 -17.87974 -17.60810 -17.26153 -16.75482 -16.38671 -16.18517 -15.79592 -15.70457 -15.42064 -14.71107 -14.51654 -14.37485 -14.31624 -13.84600 -13.78518 -13.64522 -13.58883 -13.44359 -13.22357 -13.10815 -12.83866 -12.64942 -12.46412 -12.24838 -12.15518 -12.09098 -11.56715 -11.34826 -11.15009 -10.79155 -10.72116 -10.20984 -9.54797 -9.06501 -8.70397 -8.31496 -6.49158 0.67952 1.03364 1.12945 1.38384 1.39229 1.50969 1.63826 1.68269 2.09273 2.36078 2.40202 2.97751 3.12527 3.54993 3.86420 3.92805 4.18347 4.18657 4.36561 4.38793 4.45686 4.56048 4.65038 4.73692 4.75358 4.81454 4.89998 4.91120 4.98489 4.99313 5.02932 5.13831 5.21738 5.25999 5.43342 5.55066 5.82387 5.85367 5.98512 6.28866 6.62696 6.73999 7.13365 7.21620 7.41457 8.74160 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.002451 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.770770 B =11421.562089 C =12122.519221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.306 6.306 3 C -0.055 4.055 4 H 0.111 0.889 5 C -0.143 4.143 6 C 0.158 3.842 7 N -0.721 5.721 8 C 0.712 3.288 9 O -0.600 6.600 10 N -0.636 5.636 11 C 0.292 3.708 12 C -0.297 4.297 13 C 0.087 3.913 14 C -0.081 4.081 15 N -0.344 5.344 16 C 0.275 3.725 17 C -0.552 4.552 18 H 0.048 0.952 19 C 0.023 3.977 20 N -0.918 5.918 21 Si 0.971 3.029 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.277 1.277 25 N -0.360 5.360 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.413 0.587 35 H 0.420 0.580 36 H 0.166 0.834 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.024 0.976 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.790 7.660 -14.624 28.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.081 6.081 3 C -0.183 4.183 4 H 0.129 0.871 5 C -0.202 4.202 6 C 0.033 3.967 7 N -0.378 5.378 8 C 0.412 3.588 9 O -0.478 6.478 10 N -0.288 5.288 11 C 0.037 3.963 12 C -0.328 4.328 13 C -0.044 4.044 14 C -0.139 4.139 15 N -0.126 5.126 16 C 0.157 3.843 17 C -0.590 4.590 18 H 0.066 0.934 19 C -0.178 4.178 20 N -0.556 5.556 21 Si 0.795 3.205 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.202 1.202 25 N -0.191 5.191 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.123 0.877 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.251 0.749 35 H 0.258 0.742 36 H 0.184 0.816 37 H 0.101 0.899 38 H 0.124 0.876 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.042 0.958 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.474 6.616 -13.984 26.466 hybrid contribution -0.848 -0.075 0.180 0.870 sum -22.323 6.541 -13.804 27.049 Atomic orbital electron populations 1.23459 0.91296 1.07209 1.06077 1.87517 1.10565 1.12104 1.97937 1.23401 0.97158 0.93751 1.04040 0.87097 1.22012 1.02216 1.01756 0.94265 1.21123 0.91591 0.99074 0.84863 1.44941 1.05096 1.62649 1.25134 1.15754 0.83568 0.79055 0.80457 1.90838 1.54093 1.50799 1.52110 1.41372 1.04329 1.60087 1.22976 1.18953 0.85340 0.98351 0.93692 1.21396 0.89358 1.16626 1.05448 1.21745 0.98949 0.95944 0.87714 1.20465 0.88809 1.02592 1.02050 1.48764 1.03922 1.42022 1.17929 1.19241 0.84319 0.95841 0.84935 1.21437 1.24664 1.01960 1.10988 0.93360 1.25727 0.95774 1.02138 0.94196 1.69999 1.31017 1.39928 1.14667 0.85360 0.78644 0.78422 0.78084 1.18909 1.19849 1.20182 1.77163 0.90620 1.28954 1.22344 0.89332 0.89165 0.87739 0.90631 0.89942 0.91583 0.89269 0.91872 0.74937 0.74248 0.81638 0.89863 0.87569 0.91229 0.92933 0.95754 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.45 113.37 1.19 0.37 16 2 S -0.31 -4.31 20.99 -56.49 -1.19 -5.50 16 3 C -0.05 -0.57 2.93 30.59 0.09 -0.48 16 4 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 5 C -0.14 -1.03 9.10 71.98 0.66 -0.38 16 6 C 0.16 2.59 5.12 86.38 0.44 3.03 16 7 N -0.72 -14.41 5.27 -478.54 -2.52 -16.93 16 8 C 0.71 21.35 8.53 179.05 1.53 22.88 16 9 O -0.60 -22.15 13.47 -4.01 -0.05 -22.20 16 10 N -0.64 -20.47 5.46 -321.23 -1.75 -22.23 16 11 C 0.29 12.38 8.11 133.32 1.08 13.46 16 12 C -0.30 -12.67 9.52 22.11 0.21 -12.46 16 13 C 0.09 3.78 6.93 41.39 0.29 4.07 16 14 C -0.08 -2.79 10.11 71.24 0.72 -2.07 16 15 N -0.34 -17.12 3.59 -338.44 -1.22 -18.33 16 16 C 0.28 14.85 5.99 85.64 0.51 15.37 16 17 C -0.55 -31.53 9.39 25.60 0.24 -31.29 16 18 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 19 C 0.02 1.25 5.46 84.66 0.46 1.71 16 20 N -0.92 -52.36 13.29 21.45 0.28 -52.08 16 21 Si 0.97 43.71 29.54 68.60 2.03 45.73 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 25 N -0.36 -17.45 12.59 -54.44 -0.69 -18.13 16 26 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.09 0.44 7.14 -2.39 -0.02 0.42 16 28 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.37 6.92 -2.39 -0.02 0.35 16 30 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.41 6.39 7.99 -92.71 -0.74 5.65 16 35 H 0.42 10.87 8.84 -92.71 -0.82 10.05 16 36 H 0.17 6.87 5.91 -2.91 -0.02 6.85 16 37 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.07 2.43 7.07 -2.39 -0.02 2.41 16 40 H 0.05 2.79 7.04 -2.39 -0.02 2.78 16 41 H 0.02 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -73.07 365.59 1.80 -71.27 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.51 Total: 24.18 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 7.41 Total: 14.22 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -5.89 Total: -127.70 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.20 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -4.31 SS G_CDS: -1.19 Total: -5.50 kcal Total: -73.07 1.80 -71.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272117708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.579 kcal (2) G-P(sol) polarization free energy of solvation -73.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds