Wall clock time and date at job start Fri Apr 10 2020 22:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.85303 * 23.81483 * 10 9 7 12 12 C 1.53785 * 113.61317 * 155.00188 * 10 9 7 13 13 C 1.53777 * 87.08470 * 139.98223 * 12 10 9 14 14 H 1.08991 * 113.61905 * 219.93731 * 13 12 10 15 15 N 1.46499 * 113.61341 * 89.11531 * 13 12 10 16 16 C 1.34775 * 120.00026 * 155.00093 * 15 13 12 17 17 O 1.21547 * 120.00141 * 0.02562 * 16 15 13 18 18 C 1.47895 * 119.99967 * 180.02562 * 16 15 13 19 19 N 1.32136 * 120.03504 * 359.73259 * 18 16 15 20 20 C 1.31979 * 122.76914 * 179.70076 * 19 18 16 21 21 C 1.37778 * 121.72682 * 0.57353 * 20 19 18 22 22 C 1.40384 * 118.72981 * 359.72517 * 21 20 19 23 23 C 1.40641 * 122.27752 * 179.97438 * 22 21 20 24 24 C 1.36639 * 117.95176 * 180.02562 * 23 22 21 25 25 C 1.39395 * 119.92370 * 359.97438 * 24 23 22 26 26 N 1.31206 * 121.85408 * 0.02562 * 25 24 23 27 27 C 1.33250 * 121.22388 * 359.97438 * 26 25 24 28 28 C 1.53775 * 113.62052 * 252.49932 * 10 9 7 29 29 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 31 31 H 1.08998 * 113.61667 * 254.53655 * 12 10 9 32 32 H 1.09004 * 113.61148 * 25.34618 * 12 10 9 33 33 H 0.97004 * 119.99773 * 335.00414 * 15 13 12 34 34 H 1.08002 * 119.13709 * 180.29691 * 20 19 18 35 35 H 1.08004 * 120.63315 * 179.74491 * 21 20 19 36 36 H 1.08001 * 121.02274 * 359.97438 * 23 22 21 37 37 H 1.08002 * 120.03684 * 179.97438 * 24 23 22 38 38 H 1.08003 * 119.07238 * 179.97438 * 25 24 23 39 39 H 1.09002 * 113.61195 * 334.56870 * 28 10 9 40 40 H 1.08997 * 113.61743 * 105.46902 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0655 -3.5638 0.4061 12 6 1.2601 -4.8288 0.5960 13 6 1.8480 -5.6976 -0.5284 14 1 1.1339 -6.4022 -0.9545 15 7 3.1256 -6.3237 -0.1792 16 6 3.5106 -7.4587 -0.7957 17 8 2.7980 -7.9626 -1.6417 18 6 4.8001 -8.0910 -0.4428 19 7 5.5777 -7.5410 0.4730 20 6 6.7356 -8.0619 0.8334 21 6 7.2182 -9.2195 0.2630 22 6 6.4487 -9.8578 -0.7225 23 6 6.8696 -11.0420 -1.3539 24 6 6.0509 -11.5882 -2.3017 25 6 4.8406 -10.9712 -2.6144 26 7 4.4532 -9.8665 -2.0219 27 6 5.2047 -9.2829 -1.0891 28 6 1.9992 -4.4022 -1.3432 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 0.0042 31 1 1.5915 -5.1211 1.5924 32 1 0.1798 -4.6995 0.5303 33 1 3.6944 -5.9214 0.4957 34 1 7.3222 -7.5654 1.5922 35 1 8.1701 -9.6281 0.5685 36 1 7.8112 -11.5048 -1.0981 37 1 6.3411 -12.4969 -2.8081 38 1 4.2043 -11.4146 -3.3660 39 1 1.1209 -4.1570 -1.9404 40 1 2.9273 -4.3501 -1.9124 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020249577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:17 Heat of formation + Delta-G solvation = 77.660874 kcal Electronic energy + Delta-G solvation = -24321.931296 eV Core-core repulsion = 20717.180479 eV Total energy + Delta-G solvation = -3604.750816 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63172 -39.69294 -38.38942 -37.68029 -34.06525 -33.95593 -32.58054 -31.78418 -30.80868 -29.72086 -25.95252 -25.03734 -24.66429 -24.44139 -23.65381 -22.05992 -20.93190 -19.15733 -18.82586 -17.95457 -17.81209 -17.05446 -16.53595 -15.77591 -15.51679 -15.17765 -14.86033 -14.67657 -14.47055 -14.26655 -13.83010 -13.69117 -13.50652 -13.26684 -12.99426 -12.60732 -12.56943 -12.01498 -11.77097 -11.57087 -11.16525 -10.87745 -10.72962 -10.36603 -10.23492 -10.19804 -10.10910 -9.83468 -9.74702 -9.49826 -9.38945 -8.88064 -8.84552 -8.60710 -6.92868 -5.75655 -3.04109 -0.42428 0.29720 1.29439 2.41315 3.05309 3.07701 3.44705 3.50409 3.52639 3.79254 3.82103 3.90351 4.07197 4.21634 4.34029 4.39730 4.61661 4.73601 4.93482 5.00314 5.11212 5.16611 5.23423 5.30332 5.46604 5.52120 5.57673 5.65516 5.88384 5.94261 6.01891 6.16412 6.22260 6.34455 6.40733 6.62237 6.72776 6.77939 7.15884 7.27268 7.53538 7.72840 7.78557 8.37806 8.43006 9.54227 10.12285 10.46900 11.46847 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.025487 B = 0.002577 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.318256 B =10862.980583 C =11470.482255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.159 4.159 13 C 0.116 3.884 14 H 0.097 0.903 15 N -0.688 5.688 16 C 0.564 3.436 17 O -0.497 6.497 18 C 0.146 3.854 19 N -0.442 5.442 20 C 0.077 3.923 21 C -0.125 4.125 22 C -0.085 4.085 23 C -0.064 4.064 24 C -0.156 4.156 25 C 0.131 3.869 26 N -0.420 5.420 27 C 0.106 3.894 28 C -0.175 4.175 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.409 0.591 34 H 0.168 0.832 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.166 0.834 39 H 0.086 0.914 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.043 -26.205 -0.375 30.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.199 4.199 13 C 0.010 3.990 14 H 0.115 0.885 15 N -0.340 5.340 16 C 0.346 3.654 17 O -0.369 6.369 18 C -0.007 4.007 19 N -0.155 5.155 20 C -0.069 4.069 21 C -0.145 4.145 22 C -0.092 4.092 23 C -0.090 4.090 24 C -0.177 4.177 25 C -0.043 4.043 26 N -0.127 5.127 27 C -0.019 4.019 28 C -0.217 4.217 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.245 0.755 34 H 0.185 0.815 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.183 0.817 39 H 0.105 0.895 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.627 -25.101 -0.662 29.059 hybrid contribution 1.705 -0.089 0.132 1.713 sum 16.333 -25.190 -0.530 30.026 Atomic orbital electron populations 1.69671 1.05117 1.25583 1.57678 1.24765 0.95530 0.97770 1.02942 0.86120 0.78807 0.84129 0.77160 1.20543 1.21874 1.21880 1.19353 0.91106 0.84228 1.42590 0.91055 1.42412 1.05770 0.99876 1.86960 1.21634 0.95145 0.85120 0.92698 0.90747 1.23854 1.01536 0.97195 0.97273 1.21856 0.84709 0.94120 0.98269 0.88462 1.45568 1.21906 1.24853 1.41676 1.17544 0.84289 0.81177 0.82357 1.90856 1.52535 1.62677 1.30870 1.21597 0.95185 0.91337 0.92565 1.67382 1.05078 1.31710 1.11297 1.22625 0.91989 0.93441 0.98869 1.22395 1.00354 0.96297 0.95491 1.18981 0.95418 0.96784 0.98013 1.21421 0.99774 0.93291 0.94544 1.22139 0.95712 1.01520 0.98303 1.23360 0.93848 0.90562 0.96524 1.68324 1.31092 1.08209 1.05107 1.19481 0.91349 0.95644 0.95437 1.24299 1.02010 0.95171 1.00236 0.93533 0.78026 0.91675 0.88963 0.75531 0.81491 0.83574 0.83712 0.83877 0.81699 0.89501 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.77 9.97 -15.06 -0.15 -6.92 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -18.02 5.40 -52.64 -0.28 -18.30 16 10 C 0.17 3.33 4.36 -67.12 -0.29 3.04 16 11 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 12 C -0.16 -2.66 7.58 -25.92 -0.20 -2.86 16 13 C 0.12 1.90 4.33 -67.12 -0.29 1.61 16 14 H 0.10 1.64 7.46 -51.93 -0.39 1.25 16 15 N -0.69 -10.52 5.25 -53.95 -0.28 -10.80 16 16 C 0.56 9.22 7.81 -12.31 -0.10 9.12 16 17 O -0.50 -9.46 14.81 5.32 0.08 -9.38 16 18 C 0.15 2.07 6.81 -82.55 -0.56 1.51 16 19 N -0.44 -5.35 9.48 -9.55 -0.09 -5.44 16 20 C 0.08 0.66 11.12 -17.66 -0.20 0.47 16 21 C -0.12 -0.90 9.93 -38.94 -0.39 -1.29 16 22 C -0.08 -0.80 5.75 -106.79 -0.61 -1.41 16 23 C -0.06 -0.41 9.94 -39.25 -0.39 -0.80 16 24 C -0.16 -0.95 10.03 -39.73 -0.40 -1.34 16 25 C 0.13 1.17 11.14 -17.39 -0.19 0.98 16 26 N -0.42 -5.68 8.49 -10.75 -0.09 -5.78 16 27 C 0.11 1.39 6.61 -84.63 -0.56 0.83 16 28 C -0.17 -3.26 7.68 -25.92 -0.20 -3.46 16 29 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.39 10.31 7.92 -40.82 -0.32 9.98 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.55 8.12 -51.93 -0.42 1.13 16 33 H 0.41 5.73 8.04 -40.82 -0.33 5.40 16 34 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.15 0.51 8.06 -52.48 -0.42 0.08 16 36 H 0.15 0.43 8.06 -52.49 -0.42 0.00 16 37 H 0.14 0.37 8.06 -52.49 -0.42 -0.06 16 38 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 346.43 15.07 5.22 5.22 Total: -1.00 -35.45 346.43 -9.18 -44.63 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.81 Total: 10.98 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -4.62 Total: -1.03 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -0.02 Total: -67.96 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.45 -9.18 -44.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020249577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.292 kcal (2) G-P(sol) polarization free energy of solvation -35.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds