Wall clock time and date at job start Fri Apr 10 2020 22:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.85303 * 23.81483 * 10 9 7 12 12 C 1.53785 * 113.61317 * 155.00188 * 10 9 7 13 13 C 1.53777 * 87.08470 * 139.98223 * 12 10 9 14 14 H 1.08991 * 113.61905 * 219.93731 * 13 12 10 15 15 N 1.46499 * 113.61341 * 89.11531 * 13 12 10 16 16 C 1.34775 * 120.00026 * 155.00093 * 15 13 12 17 17 O 1.21547 * 120.00141 * 0.02562 * 16 15 13 18 18 C 1.47895 * 119.99967 * 180.02562 * 16 15 13 19 19 N 1.32136 * 120.03504 * 359.73259 * 18 16 15 20 20 C 1.31979 * 122.76914 * 179.70076 * 19 18 16 21 21 C 1.37778 * 121.72682 * 0.57353 * 20 19 18 22 22 C 1.40384 * 118.72981 * 359.72517 * 21 20 19 23 23 C 1.40641 * 122.27752 * 179.97438 * 22 21 20 24 24 C 1.36639 * 117.95176 * 180.02562 * 23 22 21 25 25 C 1.39395 * 119.92370 * 359.97438 * 24 23 22 26 26 N 1.31206 * 121.85408 * 0.02562 * 25 24 23 27 27 C 1.33250 * 121.22388 * 359.97438 * 26 25 24 28 28 C 1.53775 * 113.62052 * 252.49932 * 10 9 7 29 29 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 31 31 H 1.08998 * 113.61667 * 254.53655 * 12 10 9 32 32 H 1.09004 * 113.61148 * 25.34618 * 12 10 9 33 33 H 0.97004 * 119.99773 * 335.00414 * 15 13 12 34 34 H 1.08002 * 119.13709 * 180.29691 * 20 19 18 35 35 H 1.08004 * 120.63315 * 179.74491 * 21 20 19 36 36 H 1.08001 * 121.02274 * 359.97438 * 23 22 21 37 37 H 1.08002 * 120.03684 * 179.97438 * 24 23 22 38 38 H 1.08003 * 119.07238 * 179.97438 * 25 24 23 39 39 H 1.09002 * 113.61195 * 334.56870 * 28 10 9 40 40 H 1.08997 * 113.61743 * 105.46902 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0655 -3.5638 0.4061 12 6 1.2601 -4.8288 0.5960 13 6 1.8480 -5.6976 -0.5284 14 1 1.1339 -6.4022 -0.9545 15 7 3.1256 -6.3237 -0.1792 16 6 3.5106 -7.4587 -0.7957 17 8 2.7980 -7.9626 -1.6417 18 6 4.8001 -8.0910 -0.4428 19 7 5.5777 -7.5410 0.4730 20 6 6.7356 -8.0619 0.8334 21 6 7.2182 -9.2195 0.2630 22 6 6.4487 -9.8578 -0.7225 23 6 6.8696 -11.0420 -1.3539 24 6 6.0509 -11.5882 -2.3017 25 6 4.8406 -10.9712 -2.6144 26 7 4.4532 -9.8665 -2.0219 27 6 5.2047 -9.2829 -1.0891 28 6 1.9992 -4.4022 -1.3432 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 0.0042 31 1 1.5915 -5.1211 1.5924 32 1 0.1798 -4.6995 0.5303 33 1 3.6944 -5.9214 0.4957 34 1 7.3222 -7.5654 1.5922 35 1 8.1701 -9.6281 0.5685 36 1 7.8112 -11.5048 -1.0981 37 1 6.3411 -12.4969 -2.8081 38 1 4.2043 -11.4146 -3.3660 39 1 1.1209 -4.1570 -1.9404 40 1 2.9273 -4.3501 -1.9124 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020249577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:16 Heat of formation + Delta-G solvation = 51.584974 kcal Electronic energy + Delta-G solvation = -24323.062031 eV Core-core repulsion = 20717.180479 eV Total energy + Delta-G solvation = -3605.881552 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.35873 -40.96395 -39.33420 -38.86763 -35.76971 -34.77290 -34.06404 -32.49559 -31.96110 -31.25749 -26.96455 -26.55377 -26.17054 -25.12136 -24.75372 -23.58435 -21.98068 -20.38803 -19.89151 -19.19467 -18.72063 -18.46892 -17.43341 -17.05785 -16.62548 -16.46476 -15.90879 -15.76026 -15.51128 -15.35021 -15.21883 -15.16332 -14.44087 -14.12715 -14.00636 -13.79734 -13.51477 -13.42058 -13.32501 -13.12941 -12.84340 -12.59786 -12.10977 -11.87634 -11.82111 -11.75250 -11.37699 -11.20786 -10.98032 -10.85935 -10.37759 -10.20421 -10.05049 -9.47474 -8.99249 -7.94692 -5.23345 -1.12158 -0.33709 0.63821 1.47561 1.48390 1.58508 1.62267 1.96756 2.15907 2.56594 3.02329 3.05094 3.20489 3.36483 3.42354 3.65137 3.68810 3.72854 3.83185 3.94437 3.95164 4.22529 4.27187 4.30667 4.31889 4.47860 4.57407 4.64444 4.72014 4.89465 4.90573 4.95564 5.10978 5.11333 5.19470 5.23977 5.33900 5.50747 5.62049 5.68466 6.27372 6.41228 6.65241 6.93565 7.18935 7.33545 8.09179 8.33109 9.28764 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.025487 B = 0.002577 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.318256 B =10862.980583 C =11470.482255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.243 4.243 8 H 0.077 0.923 9 N -0.726 5.726 10 C 0.155 3.845 11 H 0.079 0.921 12 C -0.140 4.140 13 C 0.132 3.868 14 H 0.093 0.907 15 N -0.684 5.684 16 C 0.561 3.439 17 O -0.536 6.536 18 C 0.096 3.904 19 N -0.451 5.451 20 C 0.054 3.946 21 C -0.087 4.087 22 C -0.106 4.106 23 C -0.050 4.050 24 C -0.153 4.153 25 C 0.128 3.872 26 N -0.486 5.486 27 C 0.083 3.917 28 C -0.170 4.170 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.415 0.585 34 H 0.201 0.799 35 H 0.197 0.803 36 H 0.192 0.808 37 H 0.186 0.814 38 H 0.182 0.818 39 H 0.075 0.925 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.903 -28.626 0.390 34.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.363 5.363 10 C 0.045 3.955 11 H 0.097 0.903 12 C -0.180 4.180 13 C 0.026 3.974 14 H 0.112 0.888 15 N -0.336 5.336 16 C 0.346 3.654 17 O -0.411 6.411 18 C -0.055 4.055 19 N -0.164 5.164 20 C -0.093 4.093 21 C -0.107 4.107 22 C -0.113 4.113 23 C -0.075 4.075 24 C -0.174 4.174 25 C -0.045 4.045 26 N -0.195 5.195 27 C -0.041 4.041 28 C -0.212 4.212 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.252 0.748 34 H 0.217 0.783 35 H 0.214 0.786 36 H 0.209 0.791 37 H 0.203 0.797 38 H 0.199 0.801 39 H 0.094 0.906 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.525 -27.559 0.110 33.207 hybrid contribution 0.674 0.440 -0.141 0.817 sum 19.199 -27.119 -0.031 33.227 Atomic orbital electron populations 1.69824 1.06614 1.26000 1.59587 1.25585 0.96414 1.01159 1.03778 0.85075 0.78269 0.79819 0.76614 1.18996 1.22245 1.21892 1.19736 0.91534 0.85347 1.40878 0.90555 1.42579 1.05443 1.00939 1.87352 1.21903 0.95495 0.84106 0.93977 0.90327 1.23670 1.01131 0.94978 0.98217 1.21573 0.85390 0.93094 0.97305 0.88845 1.45486 1.21444 1.24847 1.41830 1.18032 0.85111 0.80764 0.81463 1.90805 1.54089 1.63709 1.32540 1.21138 0.95211 0.93308 0.95796 1.67261 1.06205 1.32258 1.10671 1.23269 0.91343 0.94661 1.00070 1.22973 1.00932 0.94394 0.92449 1.19373 0.94493 0.98247 0.99198 1.21994 1.01009 0.91526 0.92993 1.22531 0.94163 1.02470 0.98209 1.23909 0.95335 0.89405 0.95830 1.68245 1.33297 1.10722 1.07258 1.19648 0.93018 0.95671 0.95733 1.24150 1.01181 0.96437 0.99475 0.94017 0.79264 0.89763 0.88920 0.74791 0.78268 0.78588 0.79083 0.79691 0.80101 0.90638 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.31 13.06 21.65 0.28 -60.03 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 3 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.24 -13.75 9.97 84.03 0.84 -12.91 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.73 -37.47 5.40 -320.46 -1.73 -39.20 16 10 C 0.16 6.32 4.36 45.52 0.20 6.52 16 11 H 0.08 3.13 8.10 -2.39 -0.02 3.11 16 12 C -0.14 -4.73 7.58 31.12 0.24 -4.49 16 13 C 0.13 4.48 4.33 45.52 0.20 4.67 16 14 H 0.09 3.29 7.46 -2.39 -0.02 3.27 16 15 N -0.68 -21.71 5.25 -442.88 -2.33 -24.04 16 16 C 0.56 19.48 7.81 86.80 0.68 20.16 16 17 O -0.54 -21.91 14.81 -3.86 -0.06 -21.96 16 18 C 0.10 2.83 6.81 42.46 0.29 3.12 16 19 N -0.45 -10.80 9.48 -184.13 -1.75 -12.55 16 20 C 0.05 0.80 11.12 84.56 0.94 1.74 16 21 C -0.09 -0.91 9.93 22.68 0.23 -0.68 16 22 C -0.11 -1.71 5.75 -21.27 -0.12 -1.83 16 23 C -0.05 -0.41 9.94 22.48 0.22 -0.19 16 24 C -0.15 -1.32 10.03 22.17 0.22 -1.10 16 25 C 0.13 2.20 11.14 85.07 0.95 3.15 16 26 N -0.49 -13.65 8.49 -187.92 -1.60 -15.25 16 27 C 0.08 2.21 6.61 40.63 0.27 2.48 16 28 C -0.17 -6.58 7.68 31.12 0.24 -6.34 16 29 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 30 H 0.38 20.67 7.92 -92.71 -0.73 19.94 16 31 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.09 3.15 8.12 -2.39 -0.02 3.13 16 33 H 0.41 11.91 8.04 -92.71 -0.75 11.17 16 34 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.20 0.01 8.06 -2.91 -0.02 -0.01 16 36 H 0.19 -0.23 8.06 -2.91 -0.02 -0.25 16 37 H 0.19 -0.02 8.06 -2.91 -0.02 -0.04 16 38 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -82.49 346.43 0.32 -82.17 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -0.38 Total: 31.72 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 5.85 Total: 10.24 kcal Atomic # 7 Polarization: -143.95 SS G_CDS: -7.12 Total: -151.06 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.06 Total: -21.96 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -82.49 0.32 -82.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020249577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.754 kcal (2) G-P(sol) polarization free energy of solvation -82.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds