Wall clock time and date at job start Fri Apr 10 2020 22:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00159 * 2 1 4 4 H 1.48502 * 109.46828 * 240.00321 * 3 2 1 5 5 H 1.48499 * 109.46790 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46892 * 119.99982 * 3 2 1 7 7 C 1.38815 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00046 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99919 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99812 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.85046 * 336.20288 * 10 9 7 12 12 C 1.53784 * 113.61213 * 107.50288 * 10 9 7 13 13 C 1.53781 * 87.07940 * 139.98453 * 12 10 9 14 14 H 1.08993 * 113.69211 * 89.13090 * 13 12 10 15 15 N 1.46506 * 113.61096 * 220.02177 * 13 12 10 16 16 C 1.34779 * 119.99461 * 252.49490 * 15 13 12 17 17 O 1.21488 * 120.00383 * 0.02562 * 16 15 13 18 18 C 1.48356 * 119.99644 * 179.97438 * 16 15 13 19 19 C 1.40167 * 119.20386 * 179.97438 * 18 16 15 20 20 C 1.36622 * 119.70823 * 179.97438 * 19 18 16 21 21 C 1.40594 * 118.20585 * 359.97438 * 20 19 18 22 22 C 1.40732 * 121.37083 * 179.97438 * 21 20 19 23 23 C 1.36585 * 118.13105 * 180.02562 * 22 21 20 24 24 C 1.39433 * 119.85081 * 359.95965 * 23 22 21 25 25 N 1.31020 * 121.83500 * 0.04047 * 24 23 22 26 26 C 1.33857 * 121.42804 * 359.97438 * 25 24 23 27 27 N 1.31889 * 119.20235 * 359.73400 * 18 16 15 28 28 C 1.53776 * 113.61648 * 205.00001 * 10 9 7 29 29 H 0.97000 * 120.00095 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99921 * 0.02562 * 9 7 2 31 31 H 1.08993 * 113.61455 * 25.43346 * 12 10 9 32 32 H 1.09001 * 113.61130 * 254.52991 * 12 10 9 33 33 H 0.96995 * 119.99814 * 72.49438 * 15 13 12 34 34 H 1.07998 * 120.14221 * 359.95659 * 19 18 16 35 35 H 1.07990 * 120.89729 * 180.02562 * 20 19 18 36 36 H 1.07997 * 120.93790 * 0.04718 * 22 21 20 37 37 H 1.08008 * 120.07920 * 179.97438 * 23 22 21 38 38 H 1.08000 * 119.08135 * 180.02562 * 24 23 22 39 39 H 1.09000 * 113.61218 * 105.47329 * 28 10 9 40 40 H 1.09003 * 113.61337 * 334.56898 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 1 3.0651 -3.5637 -0.4077 12 6 1.9999 -4.4028 1.3419 13 6 1.8482 -5.6979 0.5266 14 1 2.7978 -6.1648 0.2656 15 7 0.8880 -6.6437 1.1010 16 6 1.3262 -7.7714 1.6950 17 8 2.5172 -8.0034 1.7546 18 6 0.3540 -8.7290 2.2771 19 6 0.8278 -9.8968 2.8904 20 6 -0.0584 -10.7855 3.4303 21 6 -1.4302 -10.4888 3.3486 22 6 -2.4007 -11.3573 3.8818 23 6 -3.7149 -11.0040 3.7650 24 6 -4.0590 -9.8105 3.1315 25 7 -3.1525 -9.0045 2.6364 26 6 -1.8470 -9.2894 2.7159 27 7 -0.9351 -8.4584 2.2091 28 6 1.2596 -4.8286 -0.5970 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 1.1221 -4.1578 1.9397 32 1 2.9284 -4.3510 1.9104 33 1 -0.0628 -6.4583 1.0537 34 1 1.8888 -10.0934 2.9358 35 1 0.2856 -11.6910 3.9078 36 1 -2.1144 -12.2772 4.3699 37 1 -4.4858 -11.6475 4.1626 38 1 -5.1020 -9.5432 3.0465 39 1 1.5904 -5.1205 -1.5937 40 1 0.1793 -4.7000 -0.5292 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022115511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:19 Heat of formation + Delta-G solvation = 49.038300 kcal Electronic energy + Delta-G solvation = -23942.810073 eV Core-core repulsion = 20336.818089 eV Total energy + Delta-G solvation = -3605.991984 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.35551 -41.10450 -39.59131 -38.43397 -35.86448 -35.23213 -34.26176 -32.25793 -32.06469 -31.59070 -27.27524 -26.57400 -26.17088 -25.32765 -23.90398 -23.59457 -21.91247 -21.02507 -19.88457 -19.31449 -18.98889 -18.20662 -17.52029 -17.24408 -16.60130 -16.42258 -16.12854 -15.85062 -15.61935 -15.53381 -15.12829 -14.95254 -14.74495 -14.27413 -13.99431 -13.74456 -13.36046 -13.22746 -13.16054 -12.87721 -12.79381 -12.28729 -12.27109 -12.16169 -12.09492 -11.91233 -11.75222 -11.55058 -11.16984 -10.86630 -10.18703 -10.12567 -10.01694 -9.90683 -9.00613 -7.95122 -5.24174 -1.01844 -0.56428 0.81288 1.25271 1.47288 1.50647 1.56568 1.91629 2.09178 2.52175 2.57868 3.03632 3.35593 3.36026 3.42754 3.61697 3.66121 3.76391 3.80332 3.92599 3.94138 4.04497 4.22038 4.25829 4.27971 4.46082 4.65298 4.65828 4.81796 4.85322 4.86167 4.94448 5.07641 5.11514 5.12315 5.20735 5.30556 5.48698 5.57825 5.62704 6.11308 6.26465 6.42508 6.93053 7.07722 7.32545 8.07909 8.31460 9.28039 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.002456 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.585567 B =11400.134767 C =12383.441681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.975 3.025 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.079 0.921 9 N -0.725 5.725 10 C 0.154 3.846 11 H 0.087 0.913 12 C -0.170 4.170 13 C 0.132 3.868 14 H 0.120 0.880 15 N -0.688 5.688 16 C 0.565 3.435 17 O -0.556 6.556 18 C 0.125 3.875 19 C -0.144 4.144 20 C -0.023 4.023 21 C -0.154 4.154 22 C -0.040 4.040 23 C -0.162 4.162 24 C 0.158 3.842 25 N -0.514 5.514 26 C 0.268 3.732 27 N -0.471 5.471 28 C -0.143 4.143 29 H 0.251 0.749 30 H 0.374 0.626 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.414 0.586 34 H 0.165 0.835 35 H 0.199 0.801 36 H 0.190 0.810 37 H 0.190 0.810 38 H 0.196 0.804 39 H 0.087 0.913 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.210 -31.585 9.477 33.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.804 3.196 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.097 0.903 9 N -0.362 5.362 10 C 0.043 3.957 11 H 0.105 0.895 12 C -0.212 4.212 13 C 0.027 3.973 14 H 0.138 0.862 15 N -0.337 5.337 16 C 0.350 3.650 17 O -0.434 6.434 18 C -0.030 4.030 19 C -0.165 4.165 20 C -0.050 4.050 21 C -0.159 4.159 22 C -0.066 4.066 23 C -0.181 4.181 24 C -0.018 4.018 25 N -0.224 5.224 26 C 0.030 3.970 27 N -0.184 5.184 28 C -0.182 4.182 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.250 0.750 34 H 0.183 0.817 35 H 0.216 0.784 36 H 0.207 0.793 37 H 0.207 0.793 38 H 0.212 0.788 39 H 0.106 0.894 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.702 -29.963 8.632 31.698 hybrid contribution -0.082 0.257 0.613 0.670 sum -5.784 -29.706 9.246 31.644 Atomic orbital electron populations 1.69819 1.06675 1.26179 1.59447 1.25611 0.96406 1.01256 1.03687 0.85190 0.77168 0.79045 0.78234 1.20143 1.22255 1.20496 1.19700 0.91657 0.85279 1.41173 0.90289 1.42532 1.05360 1.00900 1.87404 1.21661 0.95914 0.83948 0.94133 0.89484 1.24166 1.01271 0.96098 0.99658 1.22374 0.93590 0.86803 0.94518 0.86211 1.45938 1.11549 1.20192 1.55995 1.18236 0.87214 0.81425 0.78098 1.90742 1.16373 1.76672 1.59646 1.21351 0.89416 0.95096 0.97160 1.21991 1.03608 0.93043 0.97861 1.21982 0.89798 0.99584 0.93595 1.20062 0.97306 0.96983 1.01540 1.22044 0.91842 0.98773 0.93919 1.22558 0.98407 0.97896 0.99260 1.23876 0.99862 0.89447 0.88641 1.67618 1.00298 1.34309 1.20217 1.19514 0.91013 0.90376 0.96124 1.67201 1.01390 1.32287 1.17533 1.23691 1.00753 0.95260 0.98517 0.94011 0.79403 0.91773 0.91970 0.74960 0.81711 0.78365 0.79295 0.79311 0.78756 0.89401 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 3 Si 0.97 47.01 29.55 68.60 2.03 49.03 16 4 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 7 C -0.25 -13.95 9.97 84.03 0.84 -13.11 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.72 -37.50 5.40 -320.45 -1.73 -39.23 16 10 C 0.15 6.22 4.48 45.52 0.20 6.42 16 11 H 0.09 3.39 8.10 -2.39 -0.02 3.37 16 12 C -0.17 -6.34 7.68 31.12 0.24 -6.10 16 13 C 0.13 4.22 4.24 45.52 0.19 4.41 16 14 H 0.12 3.72 7.46 -2.39 -0.02 3.70 16 15 N -0.69 -21.37 5.34 -442.42 -2.36 -23.74 16 16 C 0.57 17.62 7.81 86.94 0.68 18.30 16 17 O -0.56 -19.22 15.88 -3.68 -0.06 -19.28 16 18 C 0.13 3.41 6.75 42.30 0.29 3.69 16 19 C -0.14 -2.79 9.54 22.36 0.21 -2.58 16 20 C -0.02 -0.29 9.89 22.47 0.22 -0.07 16 21 C -0.15 -2.47 5.75 -21.20 -0.12 -2.59 16 22 C -0.04 -0.28 9.90 22.49 0.22 -0.06 16 23 C -0.16 -0.97 10.04 22.17 0.22 -0.75 16 24 C 0.16 2.06 11.14 85.10 0.95 3.01 16 25 N -0.51 -12.56 10.43 -193.75 -2.02 -14.58 16 26 C 0.27 6.82 7.62 135.12 1.03 7.85 16 27 N -0.47 -13.92 9.56 -182.97 -1.75 -15.67 16 28 C -0.14 -4.75 7.58 31.12 0.24 -4.51 16 29 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.37 20.79 7.92 -92.71 -0.73 20.06 16 31 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.41 12.78 8.03 -92.71 -0.74 12.04 16 34 H 0.17 2.79 7.60 -2.91 -0.02 2.77 16 35 H 0.20 0.41 8.06 -2.92 -0.02 0.39 16 36 H 0.19 -0.38 8.06 -2.91 -0.02 -0.40 16 37 H 0.19 -0.53 8.06 -2.91 -0.02 -0.56 16 38 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.08 2.76 8.09 -2.39 -0.02 2.74 16 Total: -1.00 -80.51 348.43 -0.12 -80.62 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.38 Total: 33.45 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 5.88 Total: 9.83 kcal Atomic # 7 Polarization: -146.08 SS G_CDS: -7.58 Total: -153.66 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.06 Total: -19.28 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Total: -80.51 -0.12 -80.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022115511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.662 kcal (2) G-P(sol) polarization free energy of solvation -80.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds