Wall clock time and date at job start Fri Apr 10 2020 22:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00275 * 2 1 4 4 H 1.48494 * 109.47624 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47095 * 300.00151 * 3 2 1 6 6 H 1.48506 * 109.47025 * 59.99620 * 3 2 1 7 7 C 1.38824 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99951 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99622 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99618 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.85221 * 334.67126 * 10 9 7 12 12 C 1.53785 * 113.68813 * 105.94148 * 10 9 7 13 13 C 1.53777 * 87.08241 * 89.12417 * 12 10 9 14 14 H 1.08998 * 113.68990 * 139.98657 * 13 12 10 15 15 N 1.46497 * 113.61724 * 270.88663 * 13 12 10 16 16 C 1.34776 * 119.99532 * 252.49827 * 15 13 12 17 17 O 1.21548 * 120.00348 * 359.97438 * 16 15 13 18 18 C 1.47898 * 119.99683 * 179.97438 * 16 15 13 19 19 N 1.32136 * 120.03566 * 0.02562 * 18 16 15 20 20 C 1.31979 * 122.76683 * 180.02562 * 19 18 16 21 21 C 1.37775 * 121.73029 * 359.97438 * 20 19 18 22 22 C 1.40385 * 118.73174 * 359.97438 * 21 20 19 23 23 C 1.40639 * 122.28665 * 180.02562 * 22 21 20 24 24 C 1.36644 * 117.95521 * 179.97438 * 23 22 21 25 25 C 1.39390 * 119.92394 * 0.02562 * 24 23 22 26 26 N 1.31208 * 121.85669 * 359.97438 * 25 24 23 27 27 C 1.33264 * 121.22070 * 359.74789 * 26 25 24 28 28 C 1.53781 * 113.61339 * 203.47656 * 10 9 7 29 29 H 0.96996 * 120.00147 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00232 * 0.02562 * 9 7 2 31 31 H 1.08999 * 113.61060 * 203.67840 * 12 10 9 32 32 H 1.08997 * 113.61198 * 334.57634 * 12 10 9 33 33 H 0.96998 * 120.00595 * 72.49863 * 15 13 12 34 34 H 1.08006 * 119.13446 * 180.02562 * 20 19 18 35 35 H 1.08008 * 120.63196 * 180.02562 * 21 20 19 36 36 H 1.08007 * 121.02406 * 0.02562 * 23 22 21 37 37 H 1.07996 * 120.03404 * 180.02562 * 24 23 22 38 38 H 1.08002 * 119.07281 * 180.02562 * 25 24 23 39 39 H 1.09000 * 113.61578 * 25.34726 * 28 10 9 40 40 H 1.09001 * 113.61682 * 156.17306 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 3.0557 -3.5697 -0.4289 12 6 2.0331 -4.3847 1.3561 13 6 0.7423 -5.0688 0.8758 14 1 0.6764 -6.1215 1.1503 15 7 -0.4743 -4.3193 1.1986 16 6 -1.3030 -4.7634 2.1642 17 8 -1.0412 -5.7860 2.7669 18 6 -2.5309 -4.0065 2.4906 19 7 -2.8165 -2.8950 1.8356 20 6 -3.8963 -2.1775 2.0828 21 6 -4.8053 -2.5461 3.0502 22 6 -4.5689 -3.7173 3.7871 23 6 -5.4471 -4.1633 4.7911 24 6 -5.1307 -5.3161 5.4530 25 6 -3.9671 -6.0096 5.1245 26 7 -3.1514 -5.5888 4.1869 27 6 -3.4044 -4.4752 3.5000 28 6 1.2464 -4.8368 -0.5586 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0016 31 1 2.8660 -5.0735 1.4970 32 1 1.8842 -3.7194 2.2065 33 1 -0.6834 -3.5034 0.7175 34 1 -4.0723 -1.2782 1.5111 35 1 -5.6834 -1.9458 3.2375 36 1 -6.3444 -3.6120 5.0309 37 1 -5.7816 -5.6894 6.2298 38 1 -3.7306 -6.9195 5.6562 39 1 0.4623 -4.5365 -1.2537 40 1 1.8642 -5.6487 -0.9424 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022217175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:23 Heat of formation + Delta-G solvation = 84.641255 kcal Electronic energy + Delta-G solvation = -25298.354026 eV Core-core repulsion = 21693.905902 eV Total energy + Delta-G solvation = -3604.448124 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.31683 -39.56719 -38.13159 -37.51210 -33.77038 -33.53659 -32.52275 -31.47636 -30.48467 -29.73895 -25.68265 -25.03096 -24.49320 -24.14127 -23.61296 -22.14601 -20.35223 -18.96156 -18.71214 -17.63990 -17.46597 -17.12723 -16.20967 -15.52573 -15.20138 -14.89212 -14.67795 -14.44698 -14.26394 -14.09349 -13.80012 -13.50453 -13.25387 -12.98039 -12.83412 -12.64416 -12.28421 -11.95249 -11.85719 -11.38678 -10.88786 -10.86201 -10.74661 -10.13652 -10.07284 -9.98699 -9.84640 -9.73107 -9.50084 -9.45038 -9.08146 -8.86171 -8.56391 -8.32570 -6.97632 -5.76859 -3.06378 -0.09953 0.61132 1.58362 2.76380 3.32995 3.39929 3.43090 3.49472 3.51009 4.09698 4.15198 4.25956 4.36493 4.50068 4.58575 4.63149 4.65901 5.05423 5.16761 5.22876 5.31702 5.35648 5.43658 5.52067 5.53202 5.63091 5.75125 5.94299 5.94861 6.03322 6.21476 6.22519 6.36058 6.41651 6.48502 6.67626 6.80465 6.93210 7.23634 7.66871 7.73258 7.83302 8.13634 8.40985 8.69360 9.51438 10.07454 10.40819 11.44620 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.014590 B = 0.004231 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.695104 B = 6616.603941 C = 8088.521942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.704 5.704 10 C 0.164 3.836 11 H 0.065 0.935 12 C -0.187 4.187 13 C 0.123 3.877 14 H 0.092 0.908 15 N -0.682 5.682 16 C 0.566 3.434 17 O -0.509 6.509 18 C 0.142 3.858 19 N -0.422 5.422 20 C 0.088 3.912 21 C -0.131 4.131 22 C -0.084 4.084 23 C -0.064 4.064 24 C -0.160 4.160 25 C 0.124 3.876 26 N -0.418 5.418 27 C 0.104 3.896 28 C -0.167 4.167 29 H 0.254 0.746 30 H 0.381 0.619 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.417 0.583 34 H 0.170 0.830 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.163 0.837 39 H 0.071 0.929 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.523 -9.687 7.859 17.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.345 5.345 10 C 0.052 3.948 11 H 0.083 0.917 12 C -0.229 4.229 13 C 0.018 3.982 14 H 0.110 0.890 15 N -0.337 5.337 16 C 0.349 3.651 17 O -0.383 6.383 18 C -0.011 4.011 19 N -0.134 5.134 20 C -0.058 4.058 21 C -0.152 4.152 22 C -0.092 4.092 23 C -0.090 4.090 24 C -0.181 4.181 25 C -0.050 4.050 26 N -0.126 5.126 27 C -0.021 4.021 28 C -0.207 4.207 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.257 0.743 34 H 0.187 0.813 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.180 0.820 39 H 0.089 0.911 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.878 -10.263 7.283 16.635 hybrid contribution -1.462 1.724 0.809 2.401 sum -12.341 -8.539 8.093 17.050 Atomic orbital electron populations 1.69674 1.04901 1.25493 1.57173 1.24745 0.95563 0.97604 1.02717 0.86134 0.78886 0.84173 0.77069 1.20564 1.21882 1.21985 1.19305 0.91156 0.83840 1.43146 0.90903 1.42256 1.05414 0.99601 1.87249 1.21203 0.95215 0.85629 0.92777 0.91678 1.24299 0.96214 1.00266 1.02146 1.21796 0.84197 0.95685 0.96542 0.88961 1.45758 1.22048 1.28633 1.37238 1.17563 0.82174 0.84507 0.80845 1.90806 1.73652 1.23388 1.50423 1.21607 0.95047 0.92122 0.92350 1.67516 1.18159 1.03425 1.24272 1.22736 0.88707 0.98778 0.95563 1.22403 1.00979 0.95690 0.96127 1.18958 0.95925 0.96454 0.97818 1.21393 0.98294 0.95908 0.93445 1.22072 0.98839 0.96197 1.00969 1.23283 0.89708 0.98911 0.93070 1.68306 1.28641 1.11202 1.04456 1.19490 0.93317 0.92706 0.96562 1.23857 1.00852 1.00446 0.95547 0.93572 0.78267 0.90411 0.91113 0.74253 0.81319 0.83700 0.83890 0.84159 0.82000 0.91051 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.95 13.06 55.49 0.72 -26.22 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.70 -17.49 5.17 -52.63 -0.27 -17.76 16 10 C 0.16 3.31 4.55 -67.12 -0.31 3.00 16 11 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 12 C -0.19 -3.52 7.68 -25.92 -0.20 -3.72 16 13 C 0.12 2.24 4.32 -67.12 -0.29 1.95 16 14 H 0.09 1.62 7.46 -51.93 -0.39 1.24 16 15 N -0.68 -13.53 5.12 -53.94 -0.28 -13.80 16 16 C 0.57 11.47 7.81 -12.31 -0.10 11.37 16 17 O -0.51 -11.02 14.81 5.32 0.08 -10.94 16 18 C 0.14 2.65 6.81 -82.55 -0.56 2.09 16 19 N -0.42 -7.61 9.48 -9.55 -0.09 -7.70 16 20 C 0.09 1.26 11.12 -17.66 -0.20 1.06 16 21 C -0.13 -1.50 9.93 -38.94 -0.39 -1.89 16 22 C -0.08 -1.09 5.75 -106.79 -0.61 -1.71 16 23 C -0.06 -0.60 9.94 -39.25 -0.39 -0.99 16 24 C -0.16 -1.37 10.03 -39.73 -0.40 -1.77 16 25 C 0.12 1.42 11.14 -17.39 -0.19 1.22 16 26 N -0.42 -6.82 8.49 -10.75 -0.09 -6.91 16 27 C 0.10 1.73 6.61 -84.62 -0.56 1.17 16 28 C -0.17 -2.83 7.58 -25.91 -0.20 -3.03 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.38 9.85 5.37 -40.82 -0.22 9.63 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.42 8.85 5.50 -40.82 -0.22 8.62 16 34 H 0.17 2.03 8.06 -52.48 -0.42 1.61 16 35 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -34.18 341.21 -9.05 -43.23 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -4.60 Total: 16.26 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -4.64 Total: 1.55 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -0.01 Total: -72.40 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.18 -9.05 -43.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022217175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.872 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds