Wall clock time and date at job start Fri Apr 10 2020 22:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00128 * 2 1 4 4 H 1.48503 * 109.47354 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46843 * 299.99589 * 3 2 1 6 6 H 1.48498 * 109.47278 * 59.99788 * 3 2 1 7 7 C 1.38816 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99720 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99872 * 0.02562 * 7 2 1 10 10 C 1.47584 * 134.49177 * 180.02562 * 9 7 2 11 11 C 1.53943 * 86.11504 * 155.35627 * 10 9 7 12 12 N 1.46498 * 113.74018 * 137.95471 * 11 10 9 13 13 C 1.34782 * 120.00067 * 156.92378 * 12 11 10 14 14 O 1.21577 * 120.00049 * 359.97438 * 13 12 11 15 15 C 1.47668 * 119.99860 * 180.02562 * 13 12 11 16 16 C 1.39710 * 120.07201 * 179.97438 * 15 13 12 17 17 C 1.37727 * 119.91595 * 179.97438 * 16 15 13 18 18 C 1.39053 * 120.07826 * 0.02562 * 17 16 15 19 19 N 1.39838 * 119.91995 * 179.97438 * 18 17 16 20 20 C 1.35842 * 126.10004 * 179.97438 * 19 18 17 21 21 C 1.35285 * 107.61013 * 179.97438 * 20 19 18 22 22 C 1.39955 * 107.97129 * 359.97438 * 21 20 19 23 23 N 1.30823 * 108.36870 * 0.02562 * 22 21 20 24 24 C 1.39060 * 120.15768 * 0.25352 * 18 17 16 25 25 C 1.37716 * 120.07544 * 359.48784 * 24 18 17 26 26 C 1.47811 * 134.45719 * 359.86234 * 9 7 2 27 27 H 0.97002 * 120.00004 * 0.02562 * 1 2 3 28 28 H 1.08998 * 113.77091 * 41.04950 * 10 9 7 29 29 H 1.09006 * 113.76308 * 269.65446 * 10 9 7 30 30 H 1.09007 * 113.74161 * 269.15045 * 11 10 9 31 31 H 0.97000 * 120.00138 * 336.91778 * 12 11 10 32 32 H 1.07998 * 120.04200 * 359.95650 * 16 15 13 33 33 H 1.08001 * 119.95590 * 180.02562 * 17 16 15 34 34 H 1.07999 * 126.19296 * 0.02562 * 20 19 18 35 35 H 1.08001 * 126.01244 * 180.26409 * 21 20 19 36 36 H 1.07998 * 125.81259 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.95866 * 179.72897 * 24 18 17 38 38 H 1.08004 * 120.03571 * 180.23700 * 25 24 18 39 39 H 1.08993 * 113.77170 * 90.38061 * 26 9 7 40 40 H 1.09001 * 113.83999 * 318.92128 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7201 -3.8102 0.0015 11 6 0.3465 -4.0826 0.6410 12 7 -0.3334 -5.2612 0.0982 13 6 -1.2739 -5.8927 0.8285 14 8 -1.5577 -5.4844 1.9380 15 6 -1.9589 -7.0810 0.2815 16 6 -2.9336 -7.7371 1.0375 17 6 -3.5708 -8.8448 0.5240 18 6 -3.2446 -9.3107 -0.7449 19 7 -3.8933 -10.4361 -1.2628 20 6 -3.6748 -10.9959 -2.4811 21 6 -4.5001 -12.0617 -2.5957 22 6 -5.2455 -12.1596 -1.4152 23 7 -4.8837 -11.1880 -0.6175 24 6 -2.2708 -8.6637 -1.4977 25 6 -1.6334 -7.5522 -0.9927 26 6 -0.1058 -2.7570 0.0026 27 1 -0.4850 0.8401 -0.0004 28 1 2.5620 -4.0321 0.6573 29 1 1.8325 -4.2355 -0.9959 30 1 0.3582 -4.0631 1.7308 31 1 -0.1069 -5.5872 -0.7869 32 1 -3.1869 -7.3761 2.0233 33 1 -4.3247 -9.3522 1.1076 34 1 -2.9694 -10.6527 -3.2234 35 1 -4.5681 -12.7236 -3.4464 36 1 -5.9921 -12.9096 -1.1997 37 1 -2.0169 -9.0309 -2.4811 38 1 -0.8798 -7.0479 -1.5795 39 1 -0.5312 -2.8721 -0.9942 40 1 -0.7189 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030443667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:29 Heat of formation + Delta-G solvation = 139.069897 kcal Electronic energy + Delta-G solvation = -23865.066043 eV Core-core repulsion = 20262.978122 eV Total energy + Delta-G solvation = -3602.087921 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.86500 -40.15360 -38.68390 -37.39800 -33.99649 -33.52613 -31.99084 -31.46886 -30.47665 -29.52736 -27.42236 -24.87986 -24.73741 -23.50067 -22.97345 -21.55135 -20.89647 -20.23254 -19.72711 -18.71932 -17.49512 -16.83319 -16.15323 -15.64253 -15.58363 -15.17136 -15.02409 -14.78289 -14.52702 -14.12814 -14.01523 -13.83852 -13.65926 -13.13712 -12.97683 -12.77576 -12.64025 -11.93231 -11.60203 -11.49855 -11.46464 -11.08506 -10.91608 -10.83410 -10.65278 -10.46542 -10.06457 -9.71119 -9.56550 -9.56130 -9.42939 -8.84646 -8.58530 -8.34585 -6.95695 -5.80418 -3.14712 0.21906 0.97541 1.62767 1.96114 2.36505 2.89629 3.33739 3.38874 3.43706 3.45544 3.70843 4.03800 4.27712 4.42275 4.47472 4.52024 4.70950 4.85267 4.97129 5.08390 5.13848 5.25069 5.27730 5.44568 5.49316 5.52707 5.60176 5.76905 5.84800 5.96377 6.06488 6.17207 6.19709 6.30230 6.36101 6.51338 6.68653 6.75357 7.19611 7.20280 7.31417 7.52642 7.78866 7.93211 8.43761 8.99621 9.65961 10.51767 11.36334 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.038340 B = 0.002163 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.127415 B =12941.061992 C =13181.022702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.226 4.226 8 H 0.083 0.917 9 N -0.607 5.607 10 C 0.113 3.887 11 C 0.091 3.909 12 N -0.709 5.709 13 C 0.554 3.446 14 O -0.536 6.536 15 C -0.135 4.135 16 C -0.036 4.036 17 C -0.128 4.128 18 C 0.177 3.823 19 N -0.326 5.326 20 C 0.053 3.947 21 C -0.260 4.260 22 C 0.055 3.945 23 N -0.287 5.287 24 C -0.149 4.149 25 C -0.058 4.058 26 C 0.154 3.846 27 H 0.255 0.745 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.112 0.888 31 H 0.395 0.605 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.180 0.820 35 H 0.155 0.845 36 H 0.190 0.810 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.029 0.971 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.476 -25.080 -6.351 26.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.353 4.353 8 H 0.101 0.899 9 N -0.334 5.334 10 C -0.014 4.014 11 C -0.013 4.013 12 N -0.359 5.359 13 C 0.340 3.660 14 O -0.414 6.414 15 C -0.139 4.139 16 C -0.055 4.055 17 C -0.148 4.148 18 C 0.084 3.916 19 N -0.102 5.102 20 C -0.088 4.088 21 C -0.289 4.289 22 C -0.133 4.133 23 N -0.105 5.105 24 C -0.170 4.170 25 C -0.078 4.078 26 C 0.028 3.972 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.130 0.870 31 H 0.230 0.770 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.197 0.803 35 H 0.173 0.827 36 H 0.207 0.793 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.047 0.953 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.758 -23.793 -4.397 25.410 hybrid contribution 0.626 0.285 -1.610 1.751 sum -7.132 -23.509 -6.007 25.291 Atomic orbital electron populations 1.69840 1.05059 1.25437 1.56116 1.24837 0.95716 0.97704 1.02131 0.86012 0.78702 0.83499 0.77307 1.20382 1.21700 1.21584 1.19027 0.90281 0.81562 1.44441 0.89950 1.45723 1.02412 0.99168 1.86074 1.22870 0.94603 0.86892 0.97044 1.23966 0.93351 0.83964 1.00060 1.46083 1.39430 1.30757 1.19676 1.18127 0.79886 0.82694 0.85254 1.90791 1.64224 1.66605 1.19810 1.20209 1.00098 0.98014 0.95588 1.21225 0.92098 0.92198 0.99977 1.20857 1.02104 0.97778 0.94074 1.17728 0.93667 0.85934 0.94260 1.46034 1.29838 1.21845 1.12438 1.22833 1.01340 0.95665 0.88977 1.21645 1.02974 1.02608 1.01630 1.24123 0.99699 0.97062 0.92370 1.77458 1.04965 1.07012 1.21107 1.20678 0.97811 0.97720 1.00749 1.21148 0.97938 0.94418 0.94257 1.22714 0.88176 0.89091 0.97254 0.93534 0.93130 0.94732 0.86969 0.77014 0.83506 0.83928 0.80293 0.82733 0.79299 0.84689 0.84317 0.95313 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.45 11.39 55.49 0.63 -26.82 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.23 -6.30 10.70 -15.06 -0.16 -6.46 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.61 -15.44 3.70 -177.91 -0.66 -16.10 16 10 C 0.11 2.20 8.69 -2.97 -0.03 2.17 16 11 C 0.09 1.75 4.40 -70.16 -0.31 1.44 16 12 N -0.71 -10.65 5.32 -56.36 -0.30 -10.95 16 13 C 0.55 8.74 7.77 -12.41 -0.10 8.64 16 14 O -0.54 -10.58 15.96 5.30 0.08 -10.50 16 15 C -0.14 -1.66 5.88 -104.95 -0.62 -2.28 16 16 C -0.04 -0.42 9.58 -39.22 -0.38 -0.79 16 17 C -0.13 -1.39 9.64 -39.47 -0.38 -1.77 16 18 C 0.18 1.82 6.69 -83.60 -0.56 1.26 16 19 N -0.33 -3.28 3.81 -10.54 -0.04 -3.32 16 20 C 0.05 0.39 10.82 -16.83 -0.18 0.21 16 21 C -0.26 -1.73 10.80 -39.99 -0.43 -2.16 16 22 C 0.06 0.42 12.02 -17.34 -0.21 0.22 16 23 N -0.29 -3.08 11.85 30.64 0.36 -2.72 16 24 C -0.15 -1.26 9.44 -39.47 -0.37 -1.63 16 25 C -0.06 -0.54 9.53 -39.22 -0.37 -0.92 16 26 C 0.15 3.65 7.33 -2.85 -0.02 3.63 16 27 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 30 H 0.11 2.34 7.51 -51.93 -0.39 1.95 16 31 H 0.40 4.62 6.73 -40.82 -0.27 4.34 16 32 H 0.15 1.73 7.64 -52.49 -0.40 1.33 16 33 H 0.14 1.49 7.68 -52.49 -0.40 1.09 16 34 H 0.18 0.71 7.04 -52.49 -0.37 0.34 16 35 H 0.16 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.19 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.14 0.74 6.73 -52.49 -0.35 0.38 16 38 H 0.14 0.97 6.39 -52.48 -0.34 0.63 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 2.11 7.16 -51.93 -0.37 1.74 16 LS Contribution 345.21 15.07 5.20 5.20 Total: -1.00 -35.54 345.21 -8.51 -44.04 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.56 Total: 2.81 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -4.21 Total: 1.27 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.00 Total: -59.91 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.54 -8.51 -44.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030443667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.115 kcal (2) G-P(sol) polarization free energy of solvation -35.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds