Wall clock time and date at job start Fri Apr 10 2020 22:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00128 * 2 1 4 4 H 1.48503 * 109.47354 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46843 * 299.99589 * 3 2 1 6 6 H 1.48498 * 109.47278 * 59.99788 * 3 2 1 7 7 C 1.38816 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99720 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99872 * 0.02562 * 7 2 1 10 10 C 1.47584 * 134.49177 * 180.02562 * 9 7 2 11 11 C 1.53943 * 86.11504 * 155.35627 * 10 9 7 12 12 N 1.46498 * 113.74018 * 137.95471 * 11 10 9 13 13 C 1.34782 * 120.00067 * 156.92378 * 12 11 10 14 14 O 1.21577 * 120.00049 * 359.97438 * 13 12 11 15 15 C 1.47668 * 119.99860 * 180.02562 * 13 12 11 16 16 C 1.39710 * 120.07201 * 179.97438 * 15 13 12 17 17 C 1.37727 * 119.91595 * 179.97438 * 16 15 13 18 18 C 1.39053 * 120.07826 * 0.02562 * 17 16 15 19 19 N 1.39838 * 119.91995 * 179.97438 * 18 17 16 20 20 C 1.35842 * 126.10004 * 179.97438 * 19 18 17 21 21 C 1.35285 * 107.61013 * 179.97438 * 20 19 18 22 22 C 1.39955 * 107.97129 * 359.97438 * 21 20 19 23 23 N 1.30823 * 108.36870 * 0.02562 * 22 21 20 24 24 C 1.39060 * 120.15768 * 0.25352 * 18 17 16 25 25 C 1.37716 * 120.07544 * 359.48784 * 24 18 17 26 26 C 1.47811 * 134.45719 * 359.86234 * 9 7 2 27 27 H 0.97002 * 120.00004 * 0.02562 * 1 2 3 28 28 H 1.08998 * 113.77091 * 41.04950 * 10 9 7 29 29 H 1.09006 * 113.76308 * 269.65446 * 10 9 7 30 30 H 1.09007 * 113.74161 * 269.15045 * 11 10 9 31 31 H 0.97000 * 120.00138 * 336.91778 * 12 11 10 32 32 H 1.07998 * 120.04200 * 359.95650 * 16 15 13 33 33 H 1.08001 * 119.95590 * 180.02562 * 17 16 15 34 34 H 1.07999 * 126.19296 * 0.02562 * 20 19 18 35 35 H 1.08001 * 126.01244 * 180.26409 * 21 20 19 36 36 H 1.07998 * 125.81259 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.95866 * 179.72897 * 24 18 17 38 38 H 1.08004 * 120.03571 * 180.23700 * 25 24 18 39 39 H 1.08993 * 113.77170 * 90.38061 * 26 9 7 40 40 H 1.09001 * 113.83999 * 318.92128 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7201 -3.8102 0.0015 11 6 0.3465 -4.0826 0.6410 12 7 -0.3334 -5.2612 0.0982 13 6 -1.2739 -5.8927 0.8285 14 8 -1.5577 -5.4844 1.9380 15 6 -1.9589 -7.0810 0.2815 16 6 -2.9336 -7.7371 1.0375 17 6 -3.5708 -8.8448 0.5240 18 6 -3.2446 -9.3107 -0.7449 19 7 -3.8933 -10.4361 -1.2628 20 6 -3.6748 -10.9959 -2.4811 21 6 -4.5001 -12.0617 -2.5957 22 6 -5.2455 -12.1596 -1.4152 23 7 -4.8837 -11.1880 -0.6175 24 6 -2.2708 -8.6637 -1.4977 25 6 -1.6334 -7.5522 -0.9927 26 6 -0.1058 -2.7570 0.0026 27 1 -0.4850 0.8401 -0.0004 28 1 2.5620 -4.0321 0.6573 29 1 1.8325 -4.2355 -0.9959 30 1 0.3582 -4.0631 1.7308 31 1 -0.1069 -5.5872 -0.7869 32 1 -3.1869 -7.3761 2.0233 33 1 -4.3247 -9.3522 1.1076 34 1 -2.9694 -10.6527 -3.2234 35 1 -4.5681 -12.7236 -3.4464 36 1 -5.9921 -12.9096 -1.1997 37 1 -2.0169 -9.0309 -2.4811 38 1 -0.8798 -7.0479 -1.5795 39 1 -0.5312 -2.8721 -0.9942 40 1 -0.7189 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030443667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:28 Heat of formation + Delta-G solvation = 115.112184 kcal Electronic energy + Delta-G solvation = -23866.104928 eV Core-core repulsion = 20262.978122 eV Total energy + Delta-G solvation = -3603.126806 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.47405 -41.31571 -39.87854 -38.86117 -35.30637 -34.58409 -33.75199 -32.33771 -31.10033 -30.43834 -29.22504 -26.62434 -25.87400 -24.62359 -24.08552 -22.50892 -21.58876 -21.31236 -21.22290 -19.44104 -18.79171 -18.58116 -17.49908 -16.97317 -16.31082 -16.26195 -16.19917 -15.91302 -15.78692 -15.55403 -14.97472 -14.71049 -14.60962 -14.44773 -13.79115 -13.70916 -13.59461 -13.54060 -13.30036 -13.19894 -12.83930 -12.66376 -12.32535 -12.26641 -11.91602 -11.70315 -11.54096 -11.39699 -11.05408 -10.90702 -10.21288 -10.16999 -10.00370 -9.12067 -8.97825 -7.92638 -5.27914 -0.58164 0.21692 0.93404 1.35257 1.45545 1.47435 1.57681 1.83863 1.88779 2.08160 2.49162 2.76400 3.25040 3.37726 3.40197 3.67651 3.71427 3.84195 3.87542 3.96785 4.14468 4.26618 4.31984 4.43042 4.50815 4.61933 4.74858 4.75364 4.87040 4.90992 4.98414 5.07719 5.11829 5.15294 5.23364 5.24369 5.48330 5.49321 5.67972 5.70636 5.88903 6.13265 6.56469 6.60886 6.87678 7.21983 7.57719 8.50245 9.24398 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.038340 B = 0.002163 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.127415 B =12941.061992 C =13181.022702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.072 4.072 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.232 4.232 8 H 0.092 0.908 9 N -0.640 5.640 10 C 0.124 3.876 11 C 0.119 3.881 12 N -0.694 5.694 13 C 0.555 3.445 14 O -0.586 6.586 15 C -0.156 4.156 16 C -0.043 4.043 17 C -0.140 4.140 18 C 0.178 3.822 19 N -0.344 5.344 20 C 0.048 3.952 21 C -0.260 4.260 22 C 0.055 3.945 23 N -0.337 5.337 24 C -0.139 4.139 25 C -0.043 4.043 26 C 0.151 3.849 27 H 0.248 0.752 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.416 0.584 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.215 0.785 35 H 0.184 0.816 36 H 0.216 0.784 37 H 0.176 0.824 38 H 0.169 0.831 39 H 0.029 0.971 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.099 -27.533 -9.233 29.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.265 4.265 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.219 1.219 6 H -0.222 1.222 7 C -0.360 4.360 8 H 0.110 0.890 9 N -0.367 5.367 10 C -0.001 4.001 11 C 0.013 3.987 12 N -0.346 5.346 13 C 0.344 3.656 14 O -0.467 6.467 15 C -0.160 4.160 16 C -0.062 4.062 17 C -0.160 4.160 18 C 0.085 3.915 19 N -0.120 5.120 20 C -0.092 4.092 21 C -0.288 4.288 22 C -0.132 4.132 23 N -0.155 5.155 24 C -0.159 4.159 25 C -0.062 4.062 26 C 0.024 3.976 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.254 0.746 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.232 0.768 35 H 0.201 0.799 36 H 0.233 0.767 37 H 0.193 0.807 38 H 0.186 0.814 39 H 0.047 0.953 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.354 -26.325 -7.325 28.054 hybrid contribution 0.101 0.817 -0.775 1.130 sum -6.253 -25.509 -8.100 27.485 Atomic orbital electron populations 1.70049 1.06688 1.25627 1.58147 1.25737 0.96576 1.01286 1.02898 0.84943 0.78367 0.79025 0.76575 1.18386 1.21873 1.22246 1.19476 0.91019 0.82824 1.42658 0.89006 1.46054 1.03324 1.00933 1.86387 1.23029 0.94731 0.83414 0.98949 1.23211 0.93329 0.83541 0.98651 1.45744 1.39020 1.29294 1.20544 1.18653 0.79246 0.83184 0.84519 1.90768 1.65641 1.68168 1.22105 1.19913 1.01219 0.97470 0.97392 1.21129 0.92625 0.92776 0.99715 1.20781 1.02429 0.97759 0.95030 1.17982 0.93592 0.86013 0.93950 1.46153 1.30326 1.22102 1.13465 1.23562 1.01740 0.95439 0.88444 1.22092 1.02079 1.02706 1.01926 1.24758 0.99614 0.96476 0.92401 1.77439 1.06501 1.08607 1.22968 1.21043 0.96305 0.96647 1.01902 1.21424 0.97814 0.94265 0.92743 1.22603 0.87364 0.90987 0.96608 0.94311 0.91602 0.91073 0.89066 0.74566 0.84908 0.84495 0.76813 0.79887 0.76708 0.80711 0.81377 0.95295 0.95063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.18 11.39 21.65 0.25 -58.94 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 3 Si 0.98 45.99 29.55 68.60 2.03 48.01 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.23 -12.91 10.70 84.03 0.90 -12.01 16 8 H 0.09 4.80 7.83 -2.91 -0.02 4.78 16 9 N -0.64 -32.49 3.70 -716.77 -2.65 -35.14 16 10 C 0.12 4.57 8.69 86.48 0.75 5.32 16 11 C 0.12 4.54 4.40 46.74 0.21 4.74 16 12 N -0.69 -19.99 5.32 -450.48 -2.40 -22.38 16 13 C 0.56 17.59 7.77 86.73 0.67 18.27 16 14 O -0.59 -24.24 15.96 -3.96 -0.06 -24.30 16 15 C -0.16 -3.73 5.88 -20.08 -0.12 -3.85 16 16 C -0.04 -1.05 9.58 22.50 0.22 -0.83 16 17 C -0.14 -3.08 9.64 22.34 0.22 -2.87 16 18 C 0.18 3.36 6.69 38.26 0.26 3.61 16 19 N -0.34 -6.24 3.81 -187.27 -0.71 -6.96 16 20 C 0.05 0.53 10.82 83.39 0.90 1.44 16 21 C -0.26 -2.58 10.80 22.00 0.24 -2.34 16 22 C 0.05 0.73 12.02 85.26 1.02 1.76 16 23 N -0.34 -6.91 11.85 -56.98 -0.67 -7.58 16 24 C -0.14 -1.83 9.44 22.34 0.21 -1.62 16 25 C -0.04 -0.67 9.53 22.50 0.21 -0.46 16 26 C 0.15 7.35 7.33 86.43 0.63 7.99 16 27 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 28 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.07 2.19 8.11 -2.38 -0.02 2.17 16 30 H 0.09 3.92 7.51 -2.38 -0.02 3.90 16 31 H 0.42 8.42 6.73 -92.71 -0.62 7.79 16 32 H 0.13 3.49 7.64 -2.91 -0.02 3.47 16 33 H 0.14 3.07 7.68 -2.91 -0.02 3.05 16 34 H 0.22 0.57 7.04 -2.91 -0.02 0.55 16 35 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 36 H 0.22 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.18 0.89 6.73 -2.91 -0.02 0.87 16 38 H 0.17 1.55 6.39 -2.91 -0.02 1.53 16 39 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.03 1.79 7.16 -2.39 -0.02 1.77 16 Total: -1.00 -81.93 345.21 3.02 -78.91 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.46 Total: 12.93 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 6.79 Total: 15.44 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -6.19 Total: -131.00 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.06 Total: -24.30 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -81.93 3.02 -78.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030443667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.025 kcal (2) G-P(sol) polarization free energy of solvation -81.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds