Wall clock time and date at job start Fri Apr 10 2020 22:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99694 * 2 1 4 4 H 1.48497 * 109.47483 * 239.99752 * 3 2 1 5 5 H 1.48497 * 109.47401 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46717 * 120.00324 * 3 2 1 7 7 C 1.38812 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99477 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00474 * 359.97438 * 7 2 1 10 10 C 1.47576 * 134.49457 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11601 * 155.35780 * 10 9 7 12 12 N 1.46500 * 113.73858 * 137.95319 * 11 10 9 13 13 C 1.34779 * 119.99758 * 156.92461 * 12 11 10 14 14 O 1.21632 * 119.99996 * 4.59841 * 13 12 11 15 15 C 1.47082 * 119.99969 * 184.59147 * 13 12 11 16 16 C 1.38076 * 126.49340 * 354.24271 * 15 13 12 17 17 C 1.39250 * 107.69146 * 180.25844 * 16 15 13 18 18 N 1.31018 * 108.82738 * 359.54938 * 17 16 15 19 19 N 1.36949 * 126.49610 * 174.23084 * 15 13 12 20 20 C 1.40021 * 126.16613 * 359.97438 * 19 15 13 21 21 C 1.38879 * 120.07009 * 314.87682 * 20 19 15 22 22 C 1.38110 * 119.92599 * 179.74928 * 21 20 19 23 23 C 1.38293 * 120.06972 * 0.54212 * 22 21 20 24 24 C 1.38286 * 120.13883 * 359.70799 * 23 22 21 25 25 C 1.38102 * 120.07461 * 0.02562 * 24 23 22 26 26 C 1.47824 * 134.45188 * 359.86629 * 9 7 2 27 27 H 0.96996 * 120.00062 * 359.97438 * 1 2 3 28 28 H 1.08998 * 113.77240 * 41.05934 * 10 9 7 29 29 H 1.08998 * 113.77137 * 269.65610 * 10 9 7 30 30 H 1.08995 * 113.73955 * 269.14906 * 11 10 9 31 31 H 0.96998 * 120.00539 * 336.92125 * 12 11 10 32 32 H 1.08000 * 126.15392 * 359.97438 * 16 15 13 33 33 H 1.08003 * 125.58354 * 179.73263 * 17 16 15 34 34 H 1.07998 * 120.04038 * 359.97438 * 21 20 19 35 35 H 1.07998 * 119.96508 * 180.27063 * 22 21 20 36 36 H 1.08000 * 119.92806 * 179.72616 * 23 22 21 37 37 H 1.08000 * 119.95885 * 180.02562 * 24 23 22 38 38 H 1.08006 * 120.03638 * 180.02562 * 25 24 23 39 39 H 1.08997 * 113.76358 * 90.38277 * 26 9 7 40 40 H 1.08992 * 113.83712 * 318.91717 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 1.7202 -3.8101 -0.0005 11 6 0.3471 -4.0829 0.6399 12 7 -0.3332 -5.2613 0.0970 13 6 -1.2731 -5.8931 0.8277 14 8 -1.6164 -5.4373 1.9019 15 6 -1.8838 -7.1336 0.3262 16 6 -1.6795 -7.7066 -0.9133 17 6 -2.4519 -8.8635 -0.9771 18 7 -3.0909 -9.0084 0.1574 19 7 -2.7626 -7.9392 1.0001 20 6 -3.2453 -7.7316 2.2980 21 6 -2.3726 -7.3671 3.3150 22 6 -2.8527 -7.1580 4.5929 23 6 -4.1990 -7.3222 4.8628 24 6 -5.0697 -7.6901 3.8534 25 6 -4.5968 -7.8953 2.5722 26 6 -0.1058 -2.7570 0.0024 27 1 -0.4850 0.8400 0.0004 28 1 2.5625 -4.0324 0.6547 29 1 1.8319 -4.2351 -0.9980 30 1 0.3596 -4.0639 1.7296 31 1 -0.1073 -5.5869 -0.7884 32 1 -1.0397 -7.3238 -1.6947 33 1 -2.5118 -9.5334 -1.8222 34 1 -1.3202 -7.2437 3.1060 35 1 -2.1753 -6.8703 5.3833 36 1 -4.5713 -7.1624 5.8640 37 1 -6.1207 -7.8171 4.0674 38 1 -5.2775 -8.1823 1.7842 39 1 -0.5318 -2.8717 -0.9943 40 1 -0.7183 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030537144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:37 Heat of formation + Delta-G solvation = 119.179967 kcal Electronic energy + Delta-G solvation = -24843.757137 eV Core-core repulsion = 21240.806724 eV Total energy + Delta-G solvation = -3602.950413 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.66362 -40.74745 -39.88628 -39.10414 -35.38168 -34.39848 -33.84390 -32.13320 -31.49958 -29.97075 -29.33964 -26.63394 -25.84834 -24.56270 -23.95145 -23.43405 -21.86666 -21.38648 -20.92330 -19.42944 -18.78129 -17.78023 -17.39907 -16.99542 -16.95690 -16.75898 -15.97829 -15.76567 -15.68674 -15.46544 -15.03824 -14.72570 -14.66853 -14.38311 -14.21992 -13.74358 -13.58810 -13.31497 -13.22014 -12.82280 -12.65115 -12.59818 -12.36306 -12.21262 -12.00059 -11.95712 -11.54034 -11.29414 -11.02047 -10.87943 -10.30245 -10.00549 -9.91179 -9.30210 -8.97904 -7.92006 -5.27431 -0.36472 0.35641 0.49067 1.08205 1.46379 1.50091 1.51548 1.56266 2.05361 2.11064 2.49176 2.70648 3.23554 3.34068 3.49832 3.65408 3.81146 3.90262 3.92914 4.14612 4.18094 4.28299 4.41650 4.44833 4.48851 4.54753 4.60842 4.75512 4.83310 4.90309 4.97985 5.05483 5.22747 5.27500 5.34310 5.47904 5.48063 5.56636 5.63116 5.67995 5.88599 6.05041 6.33647 6.54171 6.87528 7.04925 7.58272 8.50120 9.24481 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.018258 B = 0.003164 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.226086 B = 8848.817817 C = 9846.481060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.068 4.068 3 Si 0.982 3.018 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.236 4.236 8 H 0.092 0.908 9 N -0.638 5.638 10 C 0.124 3.876 11 C 0.125 3.875 12 N -0.680 5.680 13 C 0.575 3.425 14 O -0.559 6.559 15 C 0.010 3.990 16 C -0.196 4.196 17 C 0.053 3.947 18 N -0.295 5.295 19 N -0.308 5.308 20 C 0.112 3.888 21 C -0.091 4.091 22 C -0.118 4.118 23 C -0.109 4.109 24 C -0.112 4.112 25 C -0.118 4.118 26 C 0.151 3.849 27 H 0.248 0.752 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.419 0.581 32 H 0.197 0.803 33 H 0.238 0.762 34 H 0.110 0.890 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.130 0.870 39 H 0.027 0.973 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 -20.882 1.790 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.810 3.190 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.364 4.364 8 H 0.110 0.890 9 N -0.365 5.365 10 C -0.001 4.001 11 C 0.019 3.981 12 N -0.332 5.332 13 C 0.360 3.640 14 O -0.438 6.438 15 C -0.117 4.117 16 C -0.226 4.226 17 C -0.131 4.131 18 N -0.116 5.116 19 N -0.087 5.087 20 C 0.022 3.978 21 C -0.111 4.111 22 C -0.136 4.136 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.138 4.138 26 C 0.025 3.975 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.257 0.743 32 H 0.214 0.786 33 H 0.254 0.746 34 H 0.128 0.872 35 H 0.163 0.837 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.148 0.852 39 H 0.045 0.955 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.052 -20.923 3.286 22.323 hybrid contribution 0.913 1.670 -1.070 2.184 sum -6.139 -19.253 2.215 20.329 Atomic orbital electron populations 1.70033 1.06676 1.25770 1.57894 1.25702 0.96503 1.01189 1.02693 0.85103 0.77073 0.78424 0.78434 1.19922 1.22353 1.20081 1.19399 0.91016 0.82846 1.43137 0.89048 1.46013 1.03219 1.00873 1.86393 1.23028 0.94611 0.83437 0.99000 1.23288 0.93147 0.82918 0.98787 1.45563 1.38185 1.29139 1.20323 1.17328 0.79673 0.82659 0.84312 1.90863 1.62099 1.67469 1.23350 1.21341 0.99137 0.95517 0.95672 1.22491 1.06206 0.97692 0.96204 1.24643 0.94033 0.97953 0.96428 1.77473 1.24113 1.06623 1.03397 1.46115 1.33733 1.17522 1.11352 1.17680 0.93913 1.05349 0.80899 1.21034 0.99116 0.98329 0.92642 1.21304 0.97215 0.99465 0.95629 1.21657 0.92670 0.97422 1.00997 1.21387 1.01645 0.98823 0.91174 1.21172 0.92451 1.01053 0.99079 1.22599 0.87428 0.90934 0.96581 0.94315 0.91386 0.91170 0.88551 0.74321 0.78599 0.74598 0.87188 0.83678 0.82208 0.82108 0.85192 0.95498 0.94923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.54 11.39 21.65 0.25 -58.30 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 3 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.24 -13.02 10.70 84.03 0.90 -12.12 16 8 H 0.09 4.72 7.83 -2.91 -0.02 4.69 16 9 N -0.64 -31.91 3.70 -716.73 -2.65 -34.57 16 10 C 0.12 4.50 8.69 86.49 0.75 5.25 16 11 C 0.12 4.61 4.37 46.74 0.20 4.81 16 12 N -0.68 -19.53 5.36 -451.04 -2.42 -21.95 16 13 C 0.58 18.52 7.43 86.56 0.64 19.16 16 14 O -0.56 -22.12 12.74 -4.13 -0.05 -22.17 16 15 C 0.01 0.29 6.78 40.63 0.28 0.56 16 16 C -0.20 -3.70 10.32 22.47 0.23 -3.47 16 17 C 0.05 0.94 11.96 85.06 1.02 1.96 16 18 N -0.29 -7.56 12.42 -57.33 -0.71 -8.27 16 19 N -0.31 -9.10 3.73 -176.31 -0.66 -9.75 16 20 C 0.11 3.36 5.89 38.14 0.22 3.59 16 21 C -0.09 -2.69 7.38 22.39 0.17 -2.52 16 22 C -0.12 -2.81 10.04 22.25 0.22 -2.59 16 23 C -0.11 -2.12 10.04 22.29 0.22 -1.89 16 24 C -0.11 -2.22 10.04 22.25 0.22 -1.99 16 25 C -0.12 -3.00 9.88 22.39 0.22 -2.78 16 26 C 0.15 7.27 7.33 86.43 0.63 7.90 16 27 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.15 8.11 -2.39 -0.02 2.13 16 30 H 0.10 3.94 7.56 -2.39 -0.02 3.92 16 31 H 0.42 8.82 7.65 -92.71 -0.71 8.11 16 32 H 0.20 2.14 7.47 -2.91 -0.02 2.12 16 33 H 0.24 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.11 3.53 6.76 -2.91 -0.02 3.51 16 35 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 36 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 37 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 38 H 0.13 3.11 8.06 -2.91 -0.02 3.08 16 39 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.03 1.85 7.17 -2.39 -0.02 1.83 16 Total: -1.00 -78.12 344.00 2.55 -75.57 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.37 Total: 19.44 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 6.40 Total: 12.47 kcal Atomic # 7 Polarization: -126.65 SS G_CDS: -6.19 Total: -132.84 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.05 Total: -22.17 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -78.12 2.55 -75.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030537144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.752 kcal (2) G-P(sol) polarization free energy of solvation -78.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds