Wall clock time and date at job start Fri Apr 10 2020 22:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99611 * 3 2 1 5 5 H 1.48498 * 109.47093 * 30.00442 * 3 2 1 6 6 H 1.48508 * 109.46865 * 150.00102 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 N 1.46503 * 113.74313 * 269.15304 * 11 10 9 13 13 C 1.34768 * 120.00164 * 203.07427 * 12 11 10 14 14 O 1.21576 * 119.99879 * 0.02562 * 13 12 11 15 15 C 1.47649 * 120.00169 * 179.97438 * 13 12 11 16 16 C 1.40251 * 120.49689 * 180.02562 * 15 13 12 17 17 C 1.37999 * 118.35462 * 180.02562 * 16 15 13 18 18 C 1.39175 * 119.26264 * 0.02562 * 17 16 15 19 19 N 1.39414 * 119.53387 * 179.97438 * 18 17 16 20 20 C 1.36710 * 125.68575 * 359.69287 * 19 18 17 21 21 C 1.34774 * 108.18520 * 179.88465 * 20 19 18 22 22 C 1.41016 * 107.50100 * 0.37331 * 21 20 19 23 23 C 1.34768 * 107.50150 * 359.76594 * 22 21 20 24 24 N 1.32457 * 120.93642 * 359.97438 * 18 17 16 25 25 C 1.31635 * 121.79840 * 359.70139 * 24 18 17 26 26 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 27 27 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 28 28 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 29 29 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 30 30 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 31 31 H 0.97006 * 119.99523 * 23.07305 * 12 11 10 32 32 H 1.07999 * 120.81772 * 359.97438 * 16 15 13 33 33 H 1.08006 * 120.36657 * 179.97438 * 17 16 15 34 34 H 1.07996 * 125.90995 * 0.03920 * 20 19 18 35 35 H 1.08004 * 126.24731 * 180.13656 * 21 20 19 36 36 H 1.08002 * 126.25446 * 179.78835 * 22 21 20 37 37 H 1.08003 * 125.90691 * 180.02562 * 23 22 21 38 38 H 1.07999 * 119.68270 * 180.31450 * 25 24 18 39 39 H 1.08999 * 113.77157 * 90.38334 * 26 9 7 40 40 H 1.09002 * 113.84143 * 318.91597 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 7 0.3621 -4.0583 2.1021 13 6 -0.5902 -4.7109 2.7974 14 8 -1.4620 -5.3208 2.2091 15 6 -0.5741 -4.6863 4.2736 16 6 -1.5597 -5.3622 5.0075 17 6 -1.5026 -5.3094 6.3853 18 6 -0.4781 -4.5928 6.9967 19 7 -0.4153 -4.5352 8.3883 20 6 -1.2939 -5.1285 9.2514 21 6 -0.9008 -4.8490 10.5099 22 6 0.2566 -4.0479 10.4245 23 6 0.5317 -3.8712 9.1171 24 7 0.4382 -3.9648 6.2753 25 6 0.4250 -3.9943 4.9594 26 6 -0.1058 -2.7570 0.0001 27 1 -0.4850 0.8401 -0.0004 28 1 2.5619 -4.0327 0.6538 29 1 1.8325 -4.2346 -0.9996 30 1 -0.1594 -4.9598 0.2327 31 1 1.0580 -3.5720 2.5714 32 1 -2.3444 -5.9099 4.5067 33 1 -2.2453 -5.8178 6.9824 34 1 -2.1529 -5.7210 8.9731 35 1 -1.3860 -5.1754 11.4179 36 1 0.8199 -3.6490 11.2552 37 1 1.3577 -3.3036 8.7147 38 1 1.1921 -3.4740 4.4051 39 1 -0.5312 -2.8713 -0.9969 40 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031119695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:47 Heat of formation + Delta-G solvation = 126.655895 kcal Electronic energy + Delta-G solvation = -24367.409138 eV Core-core repulsion = 20764.782905 eV Total energy + Delta-G solvation = -3602.626233 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.99061 -40.41804 -39.10719 -37.48940 -33.85579 -33.32110 -32.85009 -31.88133 -29.78100 -29.14542 -27.52883 -24.91066 -24.82737 -24.08056 -23.03407 -21.31229 -20.46015 -20.30222 -19.41374 -18.92849 -17.66069 -16.88013 -16.67625 -15.69721 -15.46229 -15.40515 -15.00767 -14.66098 -14.47497 -14.02520 -13.82359 -13.66471 -13.46482 -13.35877 -13.13946 -12.74130 -12.64057 -12.55079 -12.30469 -11.71623 -11.28844 -10.91326 -10.61824 -10.38735 -10.31404 -10.26849 -10.16060 -9.89828 -9.68180 -9.56461 -8.90045 -8.63477 -8.53039 -8.41559 -6.97130 -5.82106 -3.16373 0.16792 0.85910 1.97208 2.29431 2.73492 2.96982 3.32331 3.35780 3.40117 3.42463 3.68973 3.93159 4.30278 4.39491 4.53636 4.57192 4.77657 4.87652 5.03908 5.06653 5.17857 5.19561 5.33247 5.42499 5.48434 5.55459 5.76802 5.94541 5.95981 6.02856 6.07464 6.17267 6.30378 6.43881 6.58392 6.70126 6.72578 7.05418 7.14756 7.25092 7.49967 7.52824 7.80797 7.91900 8.40925 8.97641 9.64569 10.51227 11.33986 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.003071 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.930499 B = 9115.094707 C =10402.902379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.080 0.920 9 N -0.612 5.612 10 C 0.111 3.889 11 C 0.089 3.911 12 N -0.684 5.684 13 C 0.564 3.436 14 O -0.543 6.543 15 C -0.195 4.195 16 C 0.011 3.989 17 C -0.196 4.196 18 C 0.366 3.634 19 N -0.397 5.397 20 C -0.017 4.017 21 C -0.180 4.180 22 C -0.198 4.198 23 C 0.015 3.985 24 N -0.505 5.505 25 C 0.176 3.824 26 C 0.151 3.849 27 H 0.254 0.746 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.403 0.597 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.168 0.832 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.171 0.829 38 H 0.173 0.827 39 H 0.037 0.963 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 -12.318 16.787 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.098 0.902 9 N -0.339 5.339 10 C -0.016 4.016 11 C -0.017 4.017 12 N -0.333 5.333 13 C 0.349 3.651 14 O -0.422 6.422 15 C -0.201 4.201 16 C -0.015 4.015 17 C -0.218 4.218 18 C 0.138 3.862 19 N -0.072 5.072 20 C -0.142 4.142 21 C -0.205 4.205 22 C -0.222 4.222 23 C -0.110 4.110 24 N -0.217 5.217 25 C 0.016 3.984 26 C 0.025 3.975 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.239 0.761 32 H 0.175 0.825 33 H 0.165 0.835 34 H 0.186 0.814 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.189 0.811 38 H 0.190 0.810 39 H 0.055 0.945 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.783 -11.937 16.508 20.450 hybrid contribution 0.197 0.937 -0.383 1.031 sum -1.586 -11.000 16.125 19.584 Atomic orbital electron populations 1.69822 1.05016 1.25429 1.56151 1.24791 0.95631 0.97538 1.02252 0.86152 0.78641 0.83509 0.77618 1.21607 1.21641 1.20576 1.19002 0.90228 0.81944 1.44394 0.90232 1.46186 1.02223 0.99162 1.86359 1.22920 0.94286 0.86950 0.97421 1.22932 0.99336 1.00474 0.78938 1.45450 1.29124 1.51354 1.07341 1.17766 0.82061 0.79446 0.85793 1.90761 1.36535 1.44304 1.70599 1.21090 0.99418 1.04197 0.95367 1.21585 0.95688 0.92181 0.92088 1.21497 1.00464 1.04300 0.95556 1.18444 0.91600 0.92811 0.83320 1.41495 1.23252 1.40322 1.02118 1.21923 0.98235 1.05232 0.88775 1.21058 0.99245 1.03928 0.96235 1.21090 1.00315 1.05221 0.95569 1.22162 0.96315 1.01690 0.90874 1.67006 1.25502 1.20885 1.08314 1.22887 0.95430 0.92145 0.87934 1.22745 0.88255 0.89247 0.97276 0.93584 0.93390 0.93415 0.88978 0.76146 0.82473 0.83539 0.81439 0.83842 0.83931 0.81126 0.81018 0.94509 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 11.39 55.49 0.63 -26.03 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.11 10.70 -15.06 -0.16 -6.27 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.61 -14.77 3.70 -177.88 -0.66 -15.42 16 10 C 0.11 2.08 8.68 -2.96 -0.03 2.06 16 11 C 0.09 1.63 4.40 -70.15 -0.31 1.32 16 12 N -0.68 -11.22 5.32 -56.35 -0.30 -11.52 16 13 C 0.56 9.07 7.77 -12.42 -0.10 8.98 16 14 O -0.54 -10.20 16.04 5.30 0.08 -10.11 16 15 C -0.19 -2.58 5.89 -104.81 -0.62 -3.20 16 16 C 0.01 0.13 9.70 -38.91 -0.38 -0.25 16 17 C -0.20 -1.99 9.46 -39.32 -0.37 -2.36 16 18 C 0.37 4.42 7.48 -154.55 -1.16 3.27 16 19 N -0.40 -4.51 2.96 -62.65 -0.19 -4.69 16 20 C -0.02 -0.15 10.71 -16.60 -0.18 -0.33 16 21 C -0.18 -1.62 10.86 -39.76 -0.43 -2.05 16 22 C -0.20 -1.93 10.86 -39.76 -0.43 -2.36 16 23 C 0.02 0.17 10.99 -16.61 -0.18 -0.01 16 24 N -0.51 -6.65 9.80 -12.00 -0.12 -6.76 16 25 C 0.18 2.22 10.71 -17.15 -0.18 2.03 16 26 C 0.15 3.47 7.32 -2.85 -0.02 3.45 16 27 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.63 7.51 -51.93 -0.39 1.24 16 31 H 0.40 6.13 6.79 -40.82 -0.28 5.86 16 32 H 0.16 1.61 7.73 -52.49 -0.41 1.20 16 33 H 0.15 1.03 6.66 -52.48 -0.35 0.68 16 34 H 0.17 1.03 6.96 -52.49 -0.37 0.67 16 35 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 36 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.17 1.78 8.03 -52.48 -0.42 1.36 16 38 H 0.17 1.92 6.41 -52.49 -0.34 1.58 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 2.01 7.16 -51.93 -0.37 1.64 16 LS Contribution 345.05 15.07 5.20 5.20 Total: -1.00 -33.03 345.05 -9.58 -42.62 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.58 Total: 6.08 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -4.64 Total: 4.04 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -0.63 Total: -64.44 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.03 -9.58 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031119695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.272 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds