Wall clock time and date at job start Fri Apr 10 2020 22:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48502 * 109.47116 * 239.99841 * 3 2 1 5 5 H 1.48494 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46650 * 120.00229 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 N 1.46503 * 113.74313 * 269.15304 * 11 10 9 13 13 C 1.34768 * 120.00164 * 203.07427 * 12 11 10 14 14 O 1.21553 * 120.00180 * 0.02562 * 13 12 11 15 15 C 1.47859 * 119.99982 * 180.02562 * 13 12 11 16 16 C 1.39613 * 120.11453 * 359.71983 * 15 13 12 17 17 C 1.37977 * 119.98501 * 179.74953 * 16 15 13 18 18 C 1.38270 * 120.21326 * 0.55179 * 17 16 15 19 19 C 1.38897 * 120.23078 * 359.70465 * 18 17 16 20 20 N 1.40253 * 119.99686 * 179.97438 * 19 18 17 21 21 C 1.37101 * 126.47260 * 0.02562 * 20 19 18 22 22 C 1.34654 * 106.83453 * 179.97438 * 21 20 19 23 23 N 1.34121 * 108.19793 * 0.02562 * 22 21 20 24 24 C 1.30523 * 109.34988 * 359.75531 * 23 22 21 25 25 C 1.38579 * 120.01065 * 0.02562 * 19 18 17 26 26 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 27 27 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 28 28 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 29 29 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 30 30 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 31 31 H 0.97006 * 119.99523 * 23.07305 * 12 11 10 32 32 H 1.08002 * 120.00471 * 0.02562 * 16 15 13 33 33 H 1.08001 * 119.89258 * 180.26249 * 17 16 15 34 34 H 1.07993 * 119.88234 * 179.72055 * 18 17 16 35 35 H 1.08006 * 126.57817 * 359.97438 * 21 20 19 36 36 H 1.08005 * 125.90125 * 180.02562 * 22 21 20 37 37 H 1.07997 * 125.71732 * 180.25838 * 24 23 22 38 38 H 1.07999 * 120.11066 * 180.02562 * 25 19 18 39 39 H 1.08999 * 113.77157 * 90.38334 * 26 9 7 40 40 H 1.09002 * 113.84143 * 318.91597 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 7 0.3621 -4.0583 2.1021 13 6 -0.5902 -4.7109 2.7974 14 8 -1.4619 -5.3207 2.2092 15 6 -0.5747 -4.6853 4.2757 16 6 0.4287 -3.9905 4.9537 17 6 0.4376 -3.9640 6.3332 18 6 -0.5384 -4.6333 7.0483 19 6 -1.5377 -5.3317 6.3829 20 7 -2.5250 -6.0094 7.1132 21 6 -2.6309 -6.0701 8.4788 22 6 -3.7159 -6.8191 8.7527 23 7 -4.2608 -7.2080 7.5905 24 6 -3.5595 -6.7254 6.6012 25 6 -1.5590 -5.3600 4.9976 26 6 -0.1058 -2.7570 0.0001 27 1 -0.4850 0.8401 -0.0004 28 1 2.5619 -4.0327 0.6538 29 1 1.8325 -4.2346 -0.9996 30 1 -0.1594 -4.9598 0.2327 31 1 1.0580 -3.5720 2.5714 32 1 1.1951 -3.4703 4.3985 33 1 1.2121 -3.4226 6.8561 34 1 -0.5237 -4.6128 8.1279 35 1 -1.9708 -5.6063 9.1968 36 1 -4.0838 -7.0643 9.7382 37 1 -3.7660 -6.8723 5.5514 38 1 -2.3355 -5.9022 4.4786 39 1 -0.5312 -2.8713 -0.9969 40 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031194847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:51 Heat of formation + Delta-G solvation = 124.112444 kcal Electronic energy + Delta-G solvation = -24436.004263 eV Core-core repulsion = 20833.267738 eV Total energy + Delta-G solvation = -3602.736525 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.56588 -40.22249 -38.78084 -37.42087 -34.49821 -33.36057 -32.01365 -31.54282 -29.99846 -29.34220 -27.59226 -24.90876 -24.67794 -23.85724 -22.96177 -21.75111 -20.95615 -20.23563 -19.41752 -18.90206 -16.90815 -16.71804 -16.48902 -15.88441 -15.76069 -15.21796 -15.01955 -14.64228 -14.56122 -14.27139 -13.93918 -13.92314 -13.79366 -13.55239 -13.01189 -12.79324 -12.63824 -12.24459 -11.73645 -11.68736 -11.29340 -10.93983 -10.91309 -10.65913 -10.35633 -10.35036 -9.92620 -9.84215 -9.57858 -9.39963 -9.02152 -8.91491 -8.61760 -8.49804 -6.98724 -5.83550 -3.17973 0.40473 0.71235 1.93378 2.33473 2.81826 2.91915 3.31763 3.34427 3.37692 3.39554 3.67355 4.30605 4.35206 4.37654 4.41076 4.52786 4.76543 4.79435 4.87856 5.02499 5.07878 5.27358 5.31062 5.40648 5.46573 5.48298 5.56108 5.92708 5.97562 6.02148 6.08967 6.14767 6.26552 6.29816 6.43169 6.44515 6.70144 6.94165 7.13937 7.24134 7.51469 7.72089 7.81819 7.90507 8.42151 8.95899 9.62808 10.49935 11.32447 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.002841 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.310275 B = 9852.847385 C =10433.783692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.612 5.612 10 C 0.111 3.889 11 C 0.088 3.912 12 N -0.682 5.682 13 C 0.555 3.445 14 O -0.542 6.542 15 C -0.095 4.095 16 C -0.088 4.088 17 C -0.097 4.097 18 C -0.113 4.113 19 C 0.121 3.879 20 N -0.409 5.409 21 C -0.056 4.056 22 C -0.024 4.024 23 N -0.487 5.487 24 C 0.193 3.807 25 C -0.076 4.076 26 C 0.151 3.849 27 H 0.255 0.745 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.404 0.596 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.211 0.789 38 H 0.146 0.854 39 H 0.037 0.963 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 -10.959 16.102 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.339 5.339 10 C -0.016 4.016 11 C -0.017 4.017 12 N -0.331 5.331 13 C 0.341 3.659 14 O -0.421 6.421 15 C -0.099 4.099 16 C -0.107 4.107 17 C -0.116 4.116 18 C -0.133 4.133 19 C 0.028 3.972 20 N -0.087 5.087 21 C -0.186 4.186 22 C -0.170 4.170 23 N -0.204 5.204 24 C -0.088 4.088 25 C -0.097 4.097 26 C 0.025 3.975 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.240 0.760 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.195 0.805 36 H 0.191 0.809 37 H 0.228 0.772 38 H 0.163 0.837 39 H 0.055 0.945 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.232 -11.488 15.555 19.377 hybrid contribution 1.561 1.869 0.144 2.439 sum 0.329 -9.620 15.700 18.415 Atomic orbital electron populations 1.69813 1.05008 1.25562 1.56015 1.24794 0.95628 0.97525 1.02257 0.86228 0.78489 0.83235 0.77922 1.21171 1.21565 1.21097 1.18951 0.90181 0.81969 1.44557 0.90313 1.46178 1.02230 0.99144 1.86372 1.22917 0.94278 0.86951 0.97413 1.22934 0.99310 1.00477 0.79025 1.45441 1.29148 1.51278 1.07246 1.18028 0.82082 0.79522 0.86253 1.90758 1.36476 1.44136 1.70728 1.19894 0.96360 0.99791 0.93838 1.21556 0.97536 0.96868 0.94773 1.21001 0.98317 0.98524 0.93738 1.21009 0.94048 0.97714 1.00488 1.17662 0.90815 0.97803 0.90874 1.43232 1.21109 1.37860 1.06549 1.22757 1.04017 1.08270 0.83583 1.22370 0.95550 1.01481 0.97625 1.70357 1.28208 1.23418 0.98404 1.25410 0.86676 0.96008 1.00729 1.20866 0.99184 0.98916 0.90710 1.22744 0.88225 0.89251 0.97282 0.93507 0.93438 0.93419 0.89006 0.76022 0.84331 0.84160 0.84856 0.80527 0.80878 0.77241 0.83679 0.94507 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.46 11.39 55.49 0.63 -25.83 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.23 -6.07 10.70 -15.06 -0.16 -6.23 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.61 -14.68 3.70 -177.88 -0.66 -15.34 16 10 C 0.11 2.08 8.68 -2.96 -0.03 2.05 16 11 C 0.09 1.62 4.40 -70.15 -0.31 1.31 16 12 N -0.68 -11.16 5.32 -56.29 -0.30 -11.46 16 13 C 0.56 8.97 7.77 -12.33 -0.10 8.87 16 14 O -0.54 -10.30 15.97 5.32 0.08 -10.22 16 15 C -0.10 -1.23 5.87 -104.99 -0.62 -1.84 16 16 C -0.09 -0.93 9.54 -39.16 -0.37 -1.30 16 17 C -0.10 -0.82 10.02 -39.67 -0.40 -1.22 16 18 C -0.11 -0.97 9.47 -39.33 -0.37 -1.34 16 19 C 0.12 1.27 6.63 -83.63 -0.55 0.72 16 20 N -0.41 -4.32 2.99 -62.14 -0.19 -4.51 16 21 C -0.06 -0.51 10.85 -16.46 -0.18 -0.69 16 22 C -0.02 -0.24 11.85 -17.82 -0.21 -0.45 16 23 N -0.49 -6.09 11.24 -14.48 -0.16 -6.25 16 24 C 0.19 2.17 11.91 -89.63 -1.07 1.10 16 25 C -0.08 -0.91 9.01 -39.00 -0.35 -1.26 16 26 C 0.15 3.47 7.32 -2.85 -0.02 3.45 16 27 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.63 7.51 -51.93 -0.39 1.24 16 31 H 0.40 6.09 6.77 -40.82 -0.28 5.81 16 32 H 0.14 1.33 6.40 -52.49 -0.34 1.00 16 33 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.13 0.81 6.80 -52.49 -0.36 0.45 16 35 H 0.18 1.00 7.14 -52.48 -0.37 0.62 16 36 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.21 1.87 7.06 -52.49 -0.37 1.50 16 38 H 0.15 1.70 6.36 -52.49 -0.33 1.37 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 2.01 7.16 -51.93 -0.37 1.64 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -33.69 342.91 -9.75 -43.44 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.47 Total: 5.76 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -4.83 Total: 2.94 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -0.68 Total: -63.39 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.69 -9.75 -43.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031194847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.550 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds