Wall clock time and date at job start Fri Apr 10 2020 22:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48502 * 109.47116 * 239.99841 * 3 2 1 5 5 H 1.48494 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46650 * 120.00229 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 N 1.46503 * 113.74313 * 269.15304 * 11 10 9 13 13 C 1.34768 * 120.00164 * 203.07427 * 12 11 10 14 14 O 1.21553 * 120.00180 * 0.02562 * 13 12 11 15 15 C 1.47859 * 119.99982 * 180.02562 * 13 12 11 16 16 C 1.39613 * 120.11453 * 359.71983 * 15 13 12 17 17 C 1.37977 * 119.98501 * 179.74953 * 16 15 13 18 18 C 1.38270 * 120.21326 * 0.55179 * 17 16 15 19 19 C 1.38897 * 120.23078 * 359.70465 * 18 17 16 20 20 N 1.40253 * 119.99686 * 179.97438 * 19 18 17 21 21 C 1.37101 * 126.47260 * 0.02562 * 20 19 18 22 22 C 1.34654 * 106.83453 * 179.97438 * 21 20 19 23 23 N 1.34121 * 108.19793 * 0.02562 * 22 21 20 24 24 C 1.30523 * 109.34988 * 359.75531 * 23 22 21 25 25 C 1.38579 * 120.01065 * 0.02562 * 19 18 17 26 26 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 27 27 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 28 28 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 29 29 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 30 30 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 31 31 H 0.97006 * 119.99523 * 23.07305 * 12 11 10 32 32 H 1.08002 * 120.00471 * 0.02562 * 16 15 13 33 33 H 1.08001 * 119.89258 * 180.26249 * 17 16 15 34 34 H 1.07993 * 119.88234 * 179.72055 * 18 17 16 35 35 H 1.08006 * 126.57817 * 359.97438 * 21 20 19 36 36 H 1.08005 * 125.90125 * 180.02562 * 22 21 20 37 37 H 1.07997 * 125.71732 * 180.25838 * 24 23 22 38 38 H 1.07999 * 120.11066 * 180.02562 * 25 19 18 39 39 H 1.08999 * 113.77157 * 90.38334 * 26 9 7 40 40 H 1.09002 * 113.84143 * 318.91597 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 7 0.3621 -4.0583 2.1021 13 6 -0.5902 -4.7109 2.7974 14 8 -1.4619 -5.3207 2.2092 15 6 -0.5747 -4.6853 4.2757 16 6 0.4287 -3.9905 4.9537 17 6 0.4376 -3.9640 6.3332 18 6 -0.5384 -4.6333 7.0483 19 6 -1.5377 -5.3317 6.3829 20 7 -2.5250 -6.0094 7.1132 21 6 -2.6309 -6.0701 8.4788 22 6 -3.7159 -6.8191 8.7527 23 7 -4.2608 -7.2080 7.5905 24 6 -3.5595 -6.7254 6.6012 25 6 -1.5590 -5.3600 4.9976 26 6 -0.1058 -2.7570 0.0001 27 1 -0.4850 0.8401 -0.0004 28 1 2.5619 -4.0327 0.6538 29 1 1.8325 -4.2346 -0.9996 30 1 -0.1594 -4.9598 0.2327 31 1 1.0580 -3.5720 2.5714 32 1 1.1951 -3.4703 4.3985 33 1 1.2121 -3.4226 6.8561 34 1 -0.5237 -4.6128 8.1279 35 1 -1.9708 -5.6063 9.1968 36 1 -4.0838 -7.0643 9.7382 37 1 -3.7660 -6.8723 5.5514 38 1 -2.3355 -5.9022 4.4786 39 1 -0.5312 -2.8713 -0.9969 40 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031194847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:50 Heat of formation + Delta-G solvation = 103.639231 kcal Electronic energy + Delta-G solvation = -24436.892048 eV Core-core repulsion = 20833.267738 eV Total energy + Delta-G solvation = -3603.624310 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.33039 -41.39496 -39.95380 -38.86689 -35.43735 -34.84925 -33.71937 -32.45837 -30.86646 -30.11476 -29.40233 -26.60308 -25.89337 -24.74828 -24.40792 -22.72254 -21.80054 -21.18861 -20.97348 -19.87426 -18.75236 -17.76877 -17.46905 -17.02587 -16.87056 -16.55453 -16.23180 -15.93805 -15.67852 -15.38702 -15.30058 -14.84331 -14.69080 -14.56568 -14.41348 -14.17347 -13.85948 -13.35560 -13.20086 -12.97954 -12.73936 -12.51994 -12.44868 -12.12944 -11.76870 -11.73850 -11.39447 -11.18601 -11.15443 -10.86800 -10.26213 -9.96884 -9.76649 -9.36812 -8.94154 -7.88013 -5.23056 -0.42049 -0.11201 1.16916 1.47317 1.50187 1.56456 1.56631 1.80726 2.08548 2.11554 2.48160 2.73042 3.27064 3.41077 3.45649 3.59396 3.71281 3.75852 3.85229 3.95614 4.02979 4.07870 4.36559 4.46073 4.52289 4.58691 4.62016 4.74424 4.79421 4.82621 4.88716 5.07366 5.13482 5.22155 5.25942 5.33704 5.48930 5.53628 5.69085 5.73778 5.91573 6.17028 6.53240 6.90797 6.95592 7.13989 7.62308 8.55505 9.27807 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.002841 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.310275 B = 9852.847385 C =10433.783692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.067 4.067 3 Si 0.977 3.023 4 H -0.281 1.281 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.230 4.230 8 H 0.090 0.910 9 N -0.635 5.635 10 C 0.120 3.880 11 C 0.111 3.889 12 N -0.680 5.680 13 C 0.554 3.446 14 O -0.579 6.579 15 C -0.118 4.118 16 C -0.088 4.088 17 C -0.088 4.088 18 C -0.097 4.097 19 C 0.113 3.887 20 N -0.412 5.412 21 C -0.046 4.046 22 C -0.045 4.045 23 N -0.519 5.519 24 C 0.172 3.828 25 C -0.087 4.087 26 C 0.145 3.855 27 H 0.246 0.754 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.411 0.589 32 H 0.146 0.854 33 H 0.178 0.822 34 H 0.169 0.831 35 H 0.217 0.783 36 H 0.196 0.804 37 H 0.217 0.783 38 H 0.134 0.866 39 H 0.023 0.977 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.497 -10.892 18.721 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.207 1.207 5 H -0.228 1.228 6 H -0.196 1.196 7 C -0.358 4.358 8 H 0.108 0.892 9 N -0.362 5.362 10 C -0.005 4.005 11 C 0.005 3.995 12 N -0.329 5.329 13 C 0.343 3.657 14 O -0.460 6.460 15 C -0.121 4.121 16 C -0.107 4.107 17 C -0.106 4.106 18 C -0.117 4.117 19 C 0.021 3.979 20 N -0.091 5.091 21 C -0.176 4.176 22 C -0.191 4.191 23 N -0.237 5.237 24 C -0.109 4.109 25 C -0.108 4.108 26 C 0.018 3.982 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.248 0.752 32 H 0.164 0.836 33 H 0.195 0.805 34 H 0.187 0.813 35 H 0.233 0.767 36 H 0.213 0.787 37 H 0.233 0.767 38 H 0.152 0.848 39 H 0.040 0.960 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.299 -11.453 18.193 21.537 hybrid contribution 0.785 1.779 -0.605 2.036 sum 2.084 -9.674 17.587 20.180 Atomic orbital electron populations 1.70031 1.06592 1.25487 1.58184 1.25613 0.96367 1.00885 1.03120 0.85180 0.77051 0.78865 0.78382 1.20681 1.22790 1.19570 1.19393 0.90906 0.83025 1.42518 0.89231 1.46460 1.02780 1.00649 1.86357 1.23064 0.95052 0.83673 0.98717 1.22562 0.98765 0.98001 0.80207 1.45370 1.29635 1.51582 1.06359 1.18568 0.81006 0.78338 0.87805 1.90729 1.37736 1.45667 1.71889 1.19630 0.98429 1.02452 0.91635 1.21730 0.96790 0.96173 0.96055 1.21403 0.98744 0.97737 0.92679 1.21460 0.92412 0.95527 1.02272 1.17765 0.91505 0.98347 0.90305 1.43328 1.20852 1.37665 1.07238 1.23392 1.03836 1.07101 0.83252 1.22882 0.96222 1.02055 0.97908 1.70324 1.29316 1.24426 0.99641 1.25614 0.87362 0.96800 1.01124 1.20830 0.98997 0.99219 0.91766 1.22653 0.87745 0.91425 0.96349 0.94539 0.90836 0.91684 0.88193 0.75170 0.83618 0.80507 0.81324 0.76676 0.78691 0.76672 0.84810 0.95954 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.69 11.39 21.65 0.25 -56.44 16 2 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 3 Si 0.98 43.95 29.55 68.60 2.03 45.97 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.23 -12.09 10.70 84.03 0.90 -11.19 16 8 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.63 -30.35 3.70 -716.70 -2.65 -33.01 16 10 C 0.12 4.30 8.68 86.49 0.75 5.05 16 11 C 0.11 4.08 4.40 46.74 0.21 4.29 16 12 N -0.68 -22.14 5.32 -450.27 -2.40 -24.54 16 13 C 0.55 18.22 7.77 86.79 0.67 18.90 16 14 O -0.58 -22.85 15.97 -3.88 -0.06 -22.92 16 15 C -0.12 -2.99 5.87 -20.10 -0.12 -3.11 16 16 C -0.09 -1.67 9.54 22.54 0.21 -1.45 16 17 C -0.09 -1.12 10.02 22.22 0.22 -0.90 16 18 C -0.10 -1.27 9.47 22.44 0.21 -1.06 16 19 C 0.11 2.17 6.63 38.03 0.25 2.42 16 20 N -0.41 -8.09 2.99 -350.50 -1.05 -9.13 16 21 C -0.05 -0.70 10.85 83.05 0.90 0.20 16 22 C -0.05 -0.85 11.85 83.52 0.99 0.14 16 23 N -0.52 -12.95 11.24 -199.71 -2.25 -15.20 16 24 C 0.17 3.91 11.91 180.00 2.14 6.05 16 25 C -0.09 -2.09 9.01 22.65 0.20 -1.88 16 26 C 0.15 6.87 7.32 86.44 0.63 7.51 16 27 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.10 3.55 7.51 -2.39 -0.02 3.53 16 31 H 0.41 12.02 6.77 -92.70 -0.63 11.40 16 32 H 0.15 2.48 6.40 -2.91 -0.02 2.46 16 33 H 0.18 1.03 8.06 -2.91 -0.02 1.00 16 34 H 0.17 1.02 6.80 -2.91 -0.02 1.00 16 35 H 0.22 1.34 7.14 -2.91 -0.02 1.32 16 36 H 0.20 2.45 8.06 -2.91 -0.02 2.42 16 37 H 0.22 4.21 7.06 -2.91 -0.02 4.19 16 38 H 0.13 3.37 6.36 -2.91 -0.02 3.36 16 39 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.04 2.22 7.16 -2.39 -0.02 2.20 16 Total: -1.00 -75.63 342.91 2.98 -72.65 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.46 Total: 20.86 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 8.65 Total: 21.76 kcal Atomic # 7 Polarization: -130.23 SS G_CDS: -8.10 Total: -138.33 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.06 Total: -22.92 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -75.63 2.98 -72.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031194847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.288 kcal (2) G-P(sol) polarization free energy of solvation -75.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds