Wall clock time and date at job start Fri Apr 10 2020 22:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48497 * 109.47359 * 355.35744 * 3 2 1 5 5 H 1.48503 * 109.47030 * 115.35999 * 3 2 1 6 6 H 1.48505 * 109.46945 * 235.35849 * 3 2 1 7 7 C 1.38816 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99662 * 352.25981 * 7 2 1 9 9 N 1.36935 * 119.99877 * 172.25761 * 7 2 1 10 10 C 1.47070 * 136.05569 * 6.39398 * 9 7 2 11 11 C 1.53757 * 87.88788 * 152.96246 * 10 9 7 12 12 N 1.46499 * 114.26765 * 139.78933 * 11 10 9 13 13 C 1.34775 * 120.00123 * 111.47706 * 12 11 10 14 14 O 1.21513 * 119.99620 * 0.02562 * 13 12 11 15 15 C 1.48175 * 120.00055 * 180.02562 * 13 12 11 16 16 C 1.39122 * 119.69344 * 180.02562 * 15 13 12 17 17 C 1.39285 * 118.97474 * 179.97438 * 16 15 13 18 18 N 1.39910 * 120.82136 * 179.97438 * 17 16 15 19 19 C 1.36633 * 125.67882 * 359.68983 * 18 17 16 20 20 C 1.34812 * 108.19994 * 179.82999 * 19 18 17 21 21 C 1.40978 * 107.47839 * 0.43016 * 20 19 18 22 22 C 1.34814 * 107.48170 * 359.73047 * 21 20 19 23 23 C 1.39280 * 118.35684 * 359.97438 * 17 16 15 24 24 C 1.38319 * 119.27803 * 359.97438 * 23 17 16 25 25 N 1.31606 * 120.98249 * 359.74536 * 24 23 17 26 26 C 1.47066 * 136.05905 * 186.76278 * 9 7 2 27 27 H 0.97004 * 120.00412 * 184.87714 * 1 2 3 28 28 H 1.09004 * 113.46535 * 267.69639 * 10 9 7 29 29 H 1.08996 * 113.46991 * 38.13336 * 10 9 7 30 30 H 1.08993 * 114.39362 * 272.67803 * 11 10 9 31 31 H 0.97001 * 120.00057 * 291.47548 * 12 11 10 32 32 H 1.08007 * 120.51007 * 359.97438 * 16 15 13 33 33 H 1.08000 * 125.89600 * 0.02562 * 19 18 17 34 34 H 1.07994 * 126.26311 * 180.15974 * 20 19 18 35 35 H 1.08002 * 126.25861 * 179.73421 * 21 20 19 36 36 H 1.07995 * 125.90524 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.35721 * 179.97438 * 23 17 16 38 38 H 1.08003 * 119.51566 * 179.97438 * 24 23 17 39 39 H 1.09001 * 113.46790 * 321.86691 * 26 9 7 40 40 H 1.09000 * 113.46631 * 92.30253 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2892 2.7442 -0.1133 5 1 3.0170 1.7466 1.2652 6 1 3.1869 1.6484 -1.1519 7 6 2.0102 -1.2022 0.0005 8 1 1.4776 -2.1331 0.1269 9 7 3.3702 -1.2077 -0.1592 10 6 4.4312 -0.1923 -0.2389 11 6 5.4059 -1.2502 0.3041 12 7 6.7259 -1.2352 -0.3312 13 6 7.8078 -0.8461 0.3720 14 8 7.6884 -0.5083 1.5331 15 6 9.1428 -0.8304 -0.2708 16 6 10.2554 -0.4282 0.4613 17 6 11.5032 -0.4196 -0.1576 18 7 12.6476 -0.0217 0.5420 19 6 12.6824 0.3909 1.8441 20 6 13.9599 0.6852 2.1585 21 6 14.7426 0.4561 1.0085 22 6 13.9156 0.0246 0.0352 23 6 11.5835 -0.8169 -1.4901 24 6 10.4318 -1.2046 -2.1509 25 7 9.2673 -1.2075 -1.5379 26 6 4.4119 -2.2311 -0.3331 27 1 -0.4851 -0.8370 0.0714 28 1 4.6554 0.1221 -1.2583 29 1 4.2793 0.6483 0.4381 30 1 5.4518 -1.3039 1.3917 31 1 6.8212 -1.5052 -1.2580 32 1 10.1531 -0.1272 1.4935 33 1 11.8336 0.4652 2.5077 34 1 14.3176 1.0366 3.1149 35 1 15.8096 0.6000 0.9230 36 1 14.2052 -0.2386 -0.9714 37 1 12.5346 -0.8222 -2.0017 38 1 10.4896 -1.5130 -3.1844 39 1 4.2436 -3.1276 0.2637 40 1 4.6311 -2.4543 -1.3773 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031219597.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:54 Heat of formation + Delta-G solvation = 131.590237 kcal Electronic energy + Delta-G solvation = -24187.915502 eV Core-core repulsion = 20585.503239 eV Total energy + Delta-G solvation = -3602.412264 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.19228 -40.63900 -39.39098 -37.97437 -34.66271 -33.71390 -32.29297 -31.90147 -30.16091 -29.40363 -27.86257 -25.42157 -25.21498 -24.20909 -22.77737 -21.44085 -20.66244 -20.27124 -19.90802 -19.03625 -17.53236 -17.31889 -16.63879 -16.33624 -15.86272 -15.73809 -15.39523 -15.05934 -14.89675 -14.50944 -14.11388 -13.95944 -13.93732 -13.51668 -13.15931 -12.78851 -12.54951 -12.43496 -12.25417 -12.04196 -11.64535 -11.45675 -10.98757 -10.61997 -10.48105 -10.39387 -9.94876 -9.77282 -9.61304 -9.22901 -8.89183 -8.83070 -8.72746 -8.60768 -7.20608 -6.35371 -3.27273 0.10350 0.40127 1.92401 2.19711 2.55812 2.61300 3.01767 3.43216 3.46084 3.50776 3.65805 3.78729 4.06969 4.13887 4.44742 4.49502 4.58031 4.68935 4.75729 4.88598 4.92251 5.05656 5.06285 5.21948 5.22750 5.34197 5.39417 5.70339 5.78422 5.80908 5.84637 5.92992 6.14432 6.23423 6.28743 6.33176 6.42763 6.66627 6.86127 6.89315 7.02814 7.23037 7.61712 8.16467 8.20619 8.93998 9.45803 10.29774 11.17374 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.028033 B = 0.002586 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.586530 B =10826.761751 C =11235.959155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.022 4.022 3 Si 1.070 2.930 4 H -0.294 1.294 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.306 4.306 8 H 0.085 0.915 9 N -0.621 5.621 10 C 0.088 3.912 11 C 0.096 3.904 12 N -0.689 5.689 13 C 0.568 3.432 14 O -0.530 6.530 15 C 0.118 3.882 16 C -0.138 4.138 17 C 0.182 3.818 18 N -0.401 5.401 19 C -0.010 4.010 20 C -0.186 4.186 21 C -0.184 4.184 22 C -0.016 4.016 23 C -0.181 4.181 24 C 0.131 3.869 25 N -0.468 5.468 26 C 0.118 3.882 27 H 0.261 0.739 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.124 0.876 31 H 0.411 0.589 32 H 0.156 0.844 33 H 0.170 0.830 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.167 0.833 37 H 0.147 0.853 38 H 0.173 0.827 39 H 0.053 0.947 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.450 -1.768 -3.077 31.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.221 4.221 3 Si 0.902 3.098 4 H -0.221 1.221 5 H -0.219 1.219 6 H -0.214 1.214 7 C -0.432 4.432 8 H 0.103 0.897 9 N -0.350 5.350 10 C -0.039 4.039 11 C -0.009 4.009 12 N -0.339 5.339 13 C 0.351 3.649 14 O -0.407 6.407 15 C -0.020 4.020 16 C -0.161 4.161 17 C 0.081 3.919 18 N -0.074 5.074 19 C -0.135 4.135 20 C -0.209 4.209 21 C -0.208 4.208 22 C -0.141 4.141 23 C -0.203 4.203 24 C -0.028 4.028 25 N -0.180 5.180 26 C -0.010 4.010 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.247 0.753 32 H 0.174 0.826 33 H 0.187 0.813 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.185 0.815 37 H 0.164 0.836 38 H 0.190 0.810 39 H 0.071 0.929 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 29.832 -0.240 -2.826 29.967 hybrid contribution 1.130 -1.542 -0.068 1.913 sum 30.962 -1.782 -2.894 31.148 Atomic orbital electron populations 1.70929 1.05280 1.29488 1.51560 1.25757 0.96434 1.01029 0.98913 0.83706 0.73769 0.75908 0.76411 1.22135 1.21929 1.21379 1.20102 0.78056 0.95963 1.49077 0.89695 1.45692 1.02147 1.01781 1.85353 1.23237 0.87502 0.94356 0.98776 1.23651 0.78393 0.99502 0.99351 1.45865 1.06886 1.65043 1.16102 1.17773 0.83144 0.78167 0.85800 1.90807 1.85481 1.48199 1.16168 1.21156 0.94216 0.96530 0.90131 1.21774 0.90036 1.01540 1.02731 1.18027 0.85995 0.95962 0.91900 1.41596 1.05234 1.50067 1.10543 1.22109 1.00050 1.06463 0.84922 1.21085 0.92387 1.07613 0.99862 1.21075 0.99570 1.06748 0.93398 1.21950 0.82285 1.09290 1.00615 1.22033 1.01921 1.03311 0.93021 1.22722 0.86138 0.93757 1.00179 1.67647 1.27777 1.13612 1.08979 1.22638 0.86913 0.93692 0.97746 0.92843 0.93344 0.92652 0.85808 0.75291 0.82633 0.81252 0.83762 0.83844 0.81523 0.83576 0.80972 0.92877 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.54 13.70 55.49 0.76 -28.78 16 2 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 3 Si 1.07 27.36 25.13 -169.99 -4.27 23.08 16 4 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 5 H -0.29 -7.18 6.65 56.52 0.38 -6.80 16 6 H -0.29 -6.83 6.13 56.52 0.35 -6.49 16 7 C -0.31 -8.88 11.08 -15.06 -0.17 -9.04 16 8 H 0.09 2.57 8.05 -52.49 -0.42 2.15 16 9 N -0.62 -15.38 3.70 -184.60 -0.68 -16.06 16 10 C 0.09 1.90 5.53 -8.37 -0.05 1.86 16 11 C 0.10 1.75 4.62 -67.67 -0.31 1.43 16 12 N -0.69 -10.28 5.38 -54.33 -0.29 -10.58 16 13 C 0.57 8.61 7.81 -12.18 -0.10 8.51 16 14 O -0.53 -9.55 15.91 5.35 0.09 -9.46 16 15 C 0.12 1.45 6.75 -83.04 -0.56 0.89 16 16 C -0.14 -1.51 9.04 -38.86 -0.35 -1.86 16 17 C 0.18 1.68 6.65 -83.39 -0.55 1.13 16 18 N -0.40 -3.59 2.97 -60.75 -0.18 -3.77 16 19 C -0.01 -0.09 10.77 -16.63 -0.18 -0.27 16 20 C -0.19 -1.51 10.86 -39.76 -0.43 -1.94 16 21 C -0.18 -1.38 10.86 -39.76 -0.43 -1.81 16 22 C -0.02 -0.12 10.77 -16.63 -0.18 -0.30 16 23 C -0.18 -1.26 9.53 -39.16 -0.37 -1.63 16 24 C 0.13 0.97 11.17 -17.62 -0.20 0.78 16 25 N -0.47 -4.97 9.54 -9.87 -0.09 -5.06 16 26 C 0.12 2.26 8.44 -8.50 -0.07 2.19 16 27 H 0.26 8.16 8.73 -40.82 -0.36 7.81 16 28 H 0.05 1.01 7.73 -51.93 -0.40 0.61 16 29 H 0.06 1.27 4.65 -51.93 -0.24 1.03 16 30 H 0.12 2.38 7.45 -51.93 -0.39 1.99 16 31 H 0.41 5.32 8.08 -40.82 -0.33 4.99 16 32 H 0.16 1.68 6.42 -52.48 -0.34 1.34 16 33 H 0.17 1.27 7.09 -52.49 -0.37 0.89 16 34 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.17 0.74 7.08 -52.49 -0.37 0.36 16 37 H 0.15 0.58 6.83 -52.49 -0.36 0.22 16 38 H 0.17 0.68 8.06 -52.48 -0.42 0.26 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -35.28 338.15 -8.19 -43.47 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.57 Total: 2.89 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -4.05 Total: -0.83 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -0.49 Total: -64.25 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 27.36 SS G_CDS: -4.27 Total: 23.08 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.28 -8.19 -43.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031219597.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.062 kcal (2) G-P(sol) polarization free energy of solvation -35.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds