Wall clock time and date at job start Fri Apr 10 2020 22:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48497 * 109.47359 * 355.35744 * 3 2 1 5 5 H 1.48503 * 109.47030 * 115.35999 * 3 2 1 6 6 H 1.48505 * 109.46945 * 235.35849 * 3 2 1 7 7 C 1.38816 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99662 * 352.25981 * 7 2 1 9 9 N 1.36935 * 119.99877 * 172.25761 * 7 2 1 10 10 C 1.47070 * 136.05569 * 6.39398 * 9 7 2 11 11 C 1.53757 * 87.88788 * 152.96246 * 10 9 7 12 12 N 1.46499 * 114.26765 * 139.78933 * 11 10 9 13 13 C 1.34775 * 120.00123 * 111.47706 * 12 11 10 14 14 O 1.21513 * 119.99620 * 0.02562 * 13 12 11 15 15 C 1.48175 * 120.00055 * 180.02562 * 13 12 11 16 16 C 1.39122 * 119.69344 * 180.02562 * 15 13 12 17 17 C 1.39285 * 118.97474 * 179.97438 * 16 15 13 18 18 N 1.39910 * 120.82136 * 179.97438 * 17 16 15 19 19 C 1.36633 * 125.67882 * 359.68983 * 18 17 16 20 20 C 1.34812 * 108.19994 * 179.82999 * 19 18 17 21 21 C 1.40978 * 107.47839 * 0.43016 * 20 19 18 22 22 C 1.34814 * 107.48170 * 359.73047 * 21 20 19 23 23 C 1.39280 * 118.35684 * 359.97438 * 17 16 15 24 24 C 1.38319 * 119.27803 * 359.97438 * 23 17 16 25 25 N 1.31606 * 120.98249 * 359.74536 * 24 23 17 26 26 C 1.47066 * 136.05905 * 186.76278 * 9 7 2 27 27 H 0.97004 * 120.00412 * 184.87714 * 1 2 3 28 28 H 1.09004 * 113.46535 * 267.69639 * 10 9 7 29 29 H 1.08996 * 113.46991 * 38.13336 * 10 9 7 30 30 H 1.08993 * 114.39362 * 272.67803 * 11 10 9 31 31 H 0.97001 * 120.00057 * 291.47548 * 12 11 10 32 32 H 1.08007 * 120.51007 * 359.97438 * 16 15 13 33 33 H 1.08000 * 125.89600 * 0.02562 * 19 18 17 34 34 H 1.07994 * 126.26311 * 180.15974 * 20 19 18 35 35 H 1.08002 * 126.25861 * 179.73421 * 21 20 19 36 36 H 1.07995 * 125.90524 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.35721 * 179.97438 * 23 17 16 38 38 H 1.08003 * 119.51566 * 179.97438 * 24 23 17 39 39 H 1.09001 * 113.46790 * 321.86691 * 26 9 7 40 40 H 1.09000 * 113.46631 * 92.30253 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2892 2.7442 -0.1133 5 1 3.0170 1.7466 1.2652 6 1 3.1869 1.6484 -1.1519 7 6 2.0102 -1.2022 0.0005 8 1 1.4776 -2.1331 0.1269 9 7 3.3702 -1.2077 -0.1592 10 6 4.4312 -0.1923 -0.2389 11 6 5.4059 -1.2502 0.3041 12 7 6.7259 -1.2352 -0.3312 13 6 7.8078 -0.8461 0.3720 14 8 7.6884 -0.5083 1.5331 15 6 9.1428 -0.8304 -0.2708 16 6 10.2554 -0.4282 0.4613 17 6 11.5032 -0.4196 -0.1576 18 7 12.6476 -0.0217 0.5420 19 6 12.6824 0.3909 1.8441 20 6 13.9599 0.6852 2.1585 21 6 14.7426 0.4561 1.0085 22 6 13.9156 0.0246 0.0352 23 6 11.5835 -0.8169 -1.4901 24 6 10.4318 -1.2046 -2.1509 25 7 9.2673 -1.2075 -1.5379 26 6 4.4119 -2.2311 -0.3331 27 1 -0.4851 -0.8370 0.0714 28 1 4.6554 0.1221 -1.2583 29 1 4.2793 0.6483 0.4381 30 1 5.4518 -1.3039 1.3917 31 1 6.8212 -1.5052 -1.2580 32 1 10.1531 -0.1272 1.4935 33 1 11.8336 0.4652 2.5077 34 1 14.3176 1.0366 3.1149 35 1 15.8096 0.6000 0.9230 36 1 14.2052 -0.2386 -0.9714 37 1 12.5346 -0.8222 -2.0017 38 1 10.4896 -1.5130 -3.1844 39 1 4.2436 -3.1276 0.2637 40 1 4.6311 -2.4543 -1.3773 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031219597.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:53 Heat of formation + Delta-G solvation = 106.726490 kcal Electronic energy + Delta-G solvation = -24188.993675 eV Core-core repulsion = 20585.503239 eV Total energy + Delta-G solvation = -3603.490436 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.80122 -41.59842 -40.58924 -39.38631 -35.57712 -35.05522 -34.14399 -32.77002 -30.81532 -30.05894 -29.63869 -27.09773 -26.27701 -24.88043 -24.24590 -22.49855 -21.65260 -21.27584 -20.99454 -19.92506 -19.54308 -18.27453 -17.81189 -17.26720 -16.96419 -16.75567 -16.55845 -16.10489 -15.86937 -15.71976 -15.26642 -15.15876 -14.91144 -14.53774 -14.48030 -13.93892 -13.66370 -13.42151 -13.31385 -13.27710 -13.08591 -13.02389 -12.47752 -12.23362 -11.63630 -11.59502 -11.45319 -11.32905 -11.04878 -10.83115 -10.50159 -10.04554 -9.43905 -9.29459 -9.27240 -8.69319 -5.52550 -0.63694 -0.27209 1.25461 1.36858 1.44842 1.55357 1.63471 1.68725 1.91575 1.99937 2.48608 2.70339 2.84802 3.01985 3.22211 3.42762 3.49781 3.51553 3.75702 3.91208 4.04989 4.15626 4.24165 4.25935 4.40218 4.47680 4.49380 4.55300 4.57726 4.66368 4.70677 4.77305 4.93144 5.11523 5.24221 5.27248 5.31465 5.45176 5.87492 5.90374 6.09040 6.28310 6.30354 6.64715 6.66816 7.01303 7.26676 8.18848 8.86242 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.028033 B = 0.002586 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.586530 B =10826.761751 C =11235.959155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.081 4.081 3 Si 1.106 2.894 4 H -0.301 1.301 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.290 4.290 8 H 0.059 0.941 9 N -0.655 5.655 10 C 0.081 3.919 11 C 0.123 3.877 12 N -0.680 5.680 13 C 0.568 3.432 14 O -0.566 6.566 15 C 0.099 3.901 16 C -0.147 4.147 17 C 0.173 3.827 18 N -0.409 5.409 19 C -0.039 4.039 20 C -0.193 4.193 21 C -0.197 4.197 22 C -0.017 4.017 23 C -0.159 4.159 24 C 0.135 3.865 25 N -0.480 5.480 26 C 0.122 3.878 27 H 0.249 0.751 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.112 0.888 31 H 0.423 0.577 32 H 0.144 0.856 33 H 0.169 0.831 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.201 0.799 37 H 0.185 0.815 38 H 0.214 0.786 39 H 0.059 0.941 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.664 -1.904 -5.388 36.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.274 4.274 3 Si 0.933 3.067 4 H -0.229 1.229 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.418 4.418 8 H 0.076 0.924 9 N -0.384 5.384 10 C -0.045 4.045 11 C 0.016 3.984 12 N -0.330 5.330 13 C 0.354 3.646 14 O -0.445 6.445 15 C -0.039 4.039 16 C -0.171 4.171 17 C 0.072 3.928 18 N -0.083 5.083 19 C -0.164 4.164 20 C -0.217 4.217 21 C -0.221 4.221 22 C -0.141 4.141 23 C -0.181 4.181 24 C -0.025 4.025 25 N -0.193 5.193 26 C -0.004 4.004 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.130 0.870 31 H 0.262 0.738 32 H 0.162 0.838 33 H 0.187 0.813 34 H 0.173 0.827 35 H 0.181 0.819 36 H 0.218 0.782 37 H 0.203 0.797 38 H 0.231 0.769 39 H 0.078 0.922 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 34.121 -0.417 -5.160 34.511 hybrid contribution 0.025 -1.613 0.631 1.732 sum 34.146 -2.029 -4.529 34.504 Atomic orbital electron populations 1.71019 1.06508 1.28782 1.54884 1.26965 0.96536 1.04388 0.99480 0.83259 0.73225 0.72326 0.77877 1.22920 1.20940 1.18331 1.19982 0.80429 0.94763 1.46592 0.92361 1.45723 1.01595 1.05088 1.85976 1.23431 0.87349 0.94290 0.99459 1.22962 0.79551 0.97238 0.98612 1.45598 1.05585 1.65271 1.16578 1.18211 0.84194 0.76845 0.85351 1.90785 1.86246 1.49619 1.17849 1.20592 0.92611 0.99417 0.91249 1.21705 0.90875 1.02057 1.02428 1.18181 0.85442 0.96286 0.92905 1.41721 1.05678 1.50325 1.10537 1.22313 1.00614 1.07859 0.85610 1.21401 0.92383 1.07058 1.00817 1.21431 1.00683 1.06829 0.93146 1.22569 0.81385 1.08180 1.01980 1.22493 1.03502 1.00359 0.91708 1.23441 0.85072 0.92377 1.01561 1.67608 1.29666 1.13953 1.08057 1.22817 0.84996 0.93112 0.99448 0.94214 0.91708 0.93952 0.87011 0.73821 0.83815 0.81349 0.82695 0.81883 0.78214 0.79731 0.76922 0.92226 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.30 13.70 21.65 0.30 -63.01 16 2 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 3 Si 1.11 55.53 25.13 68.60 1.72 57.25 16 4 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 5 H -0.28 -13.56 6.65 99.48 0.66 -12.90 16 6 H -0.26 -11.59 6.13 99.48 0.61 -10.98 16 7 C -0.29 -17.11 11.08 84.03 0.93 -16.18 16 8 H 0.06 3.66 8.05 -2.91 -0.02 3.63 16 9 N -0.65 -31.97 3.70 -737.96 -2.73 -34.70 16 10 C 0.08 3.37 5.53 83.27 0.46 3.83 16 11 C 0.12 4.30 4.62 45.55 0.21 4.51 16 12 N -0.68 -19.11 5.38 -444.08 -2.39 -21.50 16 13 C 0.57 16.83 7.81 86.88 0.68 17.51 16 14 O -0.57 -20.63 15.91 -3.76 -0.06 -20.69 16 15 C 0.10 2.29 6.75 41.85 0.28 2.57 16 16 C -0.15 -3.12 9.04 22.73 0.21 -2.92 16 17 C 0.17 2.79 6.65 38.35 0.26 3.04 16 18 N -0.41 -6.49 2.97 -346.10 -1.03 -7.52 16 19 C -0.04 -0.67 10.77 83.16 0.90 0.22 16 20 C -0.19 -2.92 10.86 22.15 0.24 -2.67 16 21 C -0.20 -2.48 10.86 22.15 0.24 -2.24 16 22 C -0.02 -0.19 10.77 83.16 0.90 0.70 16 23 C -0.16 -1.50 9.53 22.54 0.21 -1.28 16 24 C 0.13 1.39 11.17 84.75 0.95 2.34 16 25 N -0.48 -8.77 9.54 -185.14 -1.77 -10.54 16 26 C 0.12 4.49 8.44 83.18 0.70 5.19 16 27 H 0.25 16.24 8.73 -92.71 -0.81 15.44 16 28 H 0.07 2.52 7.73 -2.38 -0.02 2.50 16 29 H 0.04 1.89 4.65 -2.39 -0.01 1.88 16 30 H 0.11 4.25 7.45 -2.39 -0.02 4.24 16 31 H 0.42 9.85 8.08 -92.71 -0.75 9.10 16 32 H 0.14 3.26 6.42 -2.91 -0.02 3.24 16 33 H 0.17 2.69 7.09 -2.91 -0.02 2.67 16 34 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 36 H 0.20 0.73 7.08 -2.91 -0.02 0.70 16 37 H 0.19 0.28 6.83 -2.91 -0.02 0.26 16 38 H 0.21 0.38 8.06 -2.91 -0.02 0.36 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.07 2.28 8.13 -2.39 -0.02 2.26 16 Total: -1.00 -79.50 338.15 1.84 -77.66 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.16 Total: 12.91 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 7.63 Total: 10.13 kcal Atomic # 7 Polarization: -129.64 SS G_CDS: -7.61 Total: -137.26 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.06 Total: -20.69 kcal Atomic # 14 Polarization: 55.53 SS G_CDS: 1.72 Total: 57.25 kcal Total: -79.50 1.84 -77.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031219597.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.385 kcal (2) G-P(sol) polarization free energy of solvation -79.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds