Wall clock time and date at job start Fri Apr 10 2020 22:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99867 * 2 1 4 4 H 1.48500 * 109.47114 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47333 * 300.00238 * 3 2 1 6 6 H 1.48501 * 109.47020 * 60.00186 * 3 2 1 7 7 C 1.38812 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99838 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.47586 * 134.48922 * 179.97438 * 9 7 2 11 11 C 1.53948 * 86.11430 * 155.36160 * 10 9 7 12 12 C 1.53000 * 113.74020 * 137.95241 * 11 10 9 13 13 N 1.46503 * 109.47096 * 176.92344 * 12 11 10 14 14 C 1.34773 * 120.00452 * 180.02562 * 13 12 11 15 15 O 1.21534 * 119.99355 * 359.97438 * 14 13 12 16 16 C 1.47995 * 120.00534 * 180.02562 * 14 13 12 17 17 C 1.38898 * 121.16613 * 354.22781 * 16 14 13 18 18 C 1.39349 * 119.66591 * 180.02562 * 17 16 14 19 19 N 1.31111 * 121.90929 * 359.37405 * 18 17 16 20 20 C 1.33288 * 121.60733 * 0.96071 * 19 18 17 21 21 C 1.40831 * 121.91350 * 179.06574 * 20 19 18 22 22 C 1.36165 * 118.76867 * 180.02562 * 21 20 19 23 23 N 1.32534 * 121.96054 * 359.97438 * 22 21 20 24 24 C 1.31334 * 122.60677 * 0.02562 * 23 22 21 25 25 C 1.40088 * 119.87129 * 0.28281 * 24 23 22 26 26 C 1.47814 * 134.45731 * 359.87107 * 9 7 2 27 27 H 0.96998 * 120.00368 * 0.02562 * 1 2 3 28 28 H 1.08998 * 113.76878 * 41.05971 * 10 9 7 29 29 H 1.08997 * 113.76848 * 269.65984 * 10 9 7 30 30 H 1.08993 * 113.74033 * 269.15681 * 11 10 9 31 31 H 1.09003 * 109.47303 * 56.92653 * 12 11 10 32 32 H 1.08992 * 109.47319 * 296.92085 * 12 11 10 33 33 H 0.97005 * 119.99610 * 0.02562 * 13 12 11 34 34 H 1.07999 * 120.16528 * 359.97438 * 17 16 14 35 35 H 1.08009 * 119.04318 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.61702 * 359.97438 * 21 20 19 37 37 H 1.08003 * 119.01898 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.06807 * 180.02562 * 24 23 22 39 39 H 1.08995 * 113.76915 * 90.37985 * 26 9 7 40 40 H 1.08996 * 113.83378 * 318.91265 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.7203 -3.8101 -0.0015 11 6 0.3476 -4.0832 0.6398 12 6 -0.3633 -5.3137 0.0728 13 7 -1.6193 -5.5283 0.7956 14 6 -2.4183 -6.5625 0.4661 15 8 -2.0970 -7.3167 -0.4310 16 6 -3.6875 -6.7790 1.1959 17 6 -4.0228 -6.0055 2.2999 18 6 -5.2258 -6.2366 2.9641 19 7 -6.0677 -7.1619 2.5715 20 6 -5.8071 -7.9445 1.5245 21 6 -6.6978 -8.9531 1.1089 22 6 -6.3670 -9.7161 0.0307 23 7 -5.2355 -9.5361 -0.6354 24 6 -4.3585 -8.6159 -0.3052 25 6 -4.6021 -7.7824 0.7940 26 6 -0.1057 -2.7571 0.0023 27 1 -0.4850 0.8400 -0.0004 28 1 2.5631 -4.0326 0.6530 29 1 1.8313 -4.2346 -0.9993 30 1 0.3609 -4.0646 1.7295 31 1 0.2766 -6.1886 0.1885 32 1 -0.5751 -5.1558 -0.9847 33 1 -1.8759 -4.9261 1.5114 34 1 -3.3542 -5.2295 2.6421 35 1 -5.4763 -5.6296 3.8216 36 1 -7.6257 -9.1189 1.6362 37 1 -7.0470 -10.4910 -0.2912 38 1 -3.4493 -8.5048 -0.8775 39 1 -0.5318 -2.8718 -0.9943 40 1 -0.7183 -2.1403 0.6598 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031878217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:44:02 Heat of formation + Delta-G solvation = 71.392469 kcal Electronic energy + Delta-G solvation = -24312.575857 eV Core-core repulsion = 20707.553223 eV Total energy + Delta-G solvation = -3605.022635 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.47179 -40.76230 -39.61320 -39.05098 -35.97053 -34.73476 -34.14302 -32.63214 -31.70955 -30.45824 -27.92569 -26.55423 -26.26377 -25.23530 -24.58345 -23.46335 -22.07290 -20.78349 -19.56775 -19.11832 -18.71990 -18.39542 -17.22949 -17.10104 -16.97668 -16.54658 -16.19860 -15.81715 -15.65062 -15.59675 -15.37382 -15.01901 -14.71635 -14.32157 -14.09458 -14.05925 -13.86209 -13.29615 -13.08400 -13.03766 -12.88746 -12.52497 -12.21357 -11.84500 -11.74358 -11.61732 -11.49992 -11.22858 -10.89552 -10.85732 -10.46179 -10.37735 -10.20239 -9.59037 -8.89944 -7.90195 -5.22517 -1.17247 -0.41663 0.41245 1.46537 1.47462 1.57244 1.65313 1.87393 2.06484 2.48067 2.97364 3.08653 3.27555 3.31984 3.37502 3.43308 3.46713 3.60404 3.63509 3.76100 4.06224 4.18940 4.26182 4.34942 4.37895 4.55403 4.60156 4.68748 4.79284 4.81325 4.83589 4.89645 4.91708 5.11274 5.26672 5.29344 5.33399 5.56491 5.58120 5.67126 5.96084 6.35542 6.61764 6.84591 6.94288 7.01144 7.62215 8.57453 9.26675 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.025928 B = 0.002550 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.646617 B =10978.846899 C =11600.457725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.082 0.918 9 N -0.647 5.647 10 C 0.125 3.875 11 C -0.114 4.114 12 C 0.140 3.860 13 N -0.696 5.696 14 C 0.557 3.443 15 O -0.559 6.559 16 C -0.064 4.064 17 C -0.121 4.121 18 C 0.155 3.845 19 N -0.478 5.478 20 C 0.133 3.867 21 C -0.145 4.145 22 C 0.084 3.916 23 N -0.508 5.508 24 C 0.140 3.860 25 C -0.149 4.149 26 C 0.164 3.836 27 H 0.248 0.752 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.416 0.584 34 H 0.183 0.817 35 H 0.214 0.786 36 H 0.171 0.829 37 H 0.191 0.809 38 H 0.185 0.815 39 H 0.011 0.989 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.917 -16.272 8.044 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.217 1.217 7 C -0.361 4.361 8 H 0.100 0.900 9 N -0.373 5.373 10 C 0.000 4.000 11 C -0.133 4.133 12 C 0.016 3.984 13 N -0.347 5.347 14 C 0.344 3.656 15 O -0.439 6.439 16 C -0.077 4.077 17 C -0.142 4.142 18 C -0.019 4.019 19 N -0.186 5.186 20 C 0.007 3.993 21 C -0.165 4.165 22 C -0.060 4.060 23 N -0.217 5.217 24 C -0.031 4.031 25 C -0.154 4.154 26 C 0.039 3.961 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.254 0.746 34 H 0.201 0.799 35 H 0.231 0.769 36 H 0.188 0.812 37 H 0.208 0.792 38 H 0.201 0.799 39 H 0.029 0.971 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.378 -17.289 7.081 22.411 hybrid contribution 0.888 2.133 0.070 2.311 sum -11.490 -15.157 7.151 20.319 Atomic orbital electron populations 1.69980 1.06254 1.25456 1.58374 1.25577 0.96601 1.00690 1.03165 0.85053 0.78221 0.79646 0.76669 1.19110 1.22329 1.21662 1.19446 0.90835 0.83485 1.42330 0.90015 1.46429 1.03945 1.00707 1.86234 1.22706 0.95839 0.83450 0.98027 1.23421 0.96121 0.92658 1.01118 1.21332 0.83767 0.97665 0.95675 1.45804 1.21724 1.28957 1.38261 1.18222 0.83436 0.81122 0.82811 1.90603 1.74289 1.46730 1.32291 1.20303 0.94022 0.96367 0.97045 1.23002 0.99053 0.98772 0.93366 1.23912 0.87880 0.92023 0.98052 1.67954 1.32646 1.05455 1.12576 1.19214 0.92240 0.95746 0.92081 1.22024 1.01039 0.94739 0.98682 1.22913 0.93322 0.98455 0.91338 1.67704 1.03738 1.19400 1.30856 1.24275 0.98250 0.88053 0.92479 1.19759 0.96661 0.99297 0.99674 1.22311 0.86891 0.90985 0.95957 0.94313 0.91902 0.93582 0.87208 0.89753 0.92267 0.74599 0.79931 0.76921 0.81156 0.79176 0.79888 0.97124 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.51 11.39 21.65 0.25 -55.26 16 2 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.98 44.70 29.55 68.60 2.03 46.73 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.23 -12.67 10.70 84.03 0.90 -11.77 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.65 -31.47 3.70 -716.06 -2.65 -34.12 16 10 C 0.12 4.51 8.51 86.49 0.74 5.24 16 11 C -0.11 -3.46 3.93 -10.13 -0.04 -3.50 16 12 C 0.14 3.57 5.51 86.38 0.48 4.04 16 13 N -0.70 -15.07 5.51 -465.83 -2.57 -17.64 16 14 C 0.56 13.81 7.76 86.83 0.67 14.48 16 15 O -0.56 -17.34 13.61 -3.82 -0.05 -17.39 16 16 C -0.06 -1.38 5.93 -19.70 -0.12 -1.49 16 17 C -0.12 -1.69 9.60 22.70 0.22 -1.47 16 18 C 0.16 2.05 11.14 85.07 0.95 3.00 16 19 N -0.48 -9.27 10.33 -188.54 -1.95 -11.22 16 20 C 0.13 2.97 6.63 40.45 0.27 3.24 16 21 C -0.14 -2.68 10.08 22.42 0.23 -2.45 16 22 C 0.08 1.60 11.06 84.10 0.93 2.53 16 23 N -0.51 -13.07 10.31 -195.81 -2.02 -15.09 16 24 C 0.14 3.82 10.52 85.22 0.90 4.71 16 25 C -0.15 -3.69 5.77 -21.11 -0.12 -3.81 16 26 C 0.16 7.07 7.08 86.45 0.61 7.68 16 27 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 30 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 1.74 7.87 -2.39 -0.02 1.72 16 33 H 0.42 6.82 6.65 -92.70 -0.62 6.20 16 34 H 0.18 1.26 6.56 -2.91 -0.02 1.24 16 35 H 0.21 0.94 8.06 -2.91 -0.02 0.92 16 36 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.19 2.18 8.06 -2.91 -0.02 2.15 16 38 H 0.18 5.45 5.09 -2.91 -0.01 5.43 16 39 H 0.01 0.50 7.92 -2.39 -0.02 0.48 16 40 H 0.05 2.28 7.17 -2.39 -0.02 2.26 16 Total: -1.00 -74.94 339.54 0.58 -74.36 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.47 Total: 12.46 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 7.07 Total: 17.17 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -8.94 Total: -133.32 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.05 Total: -17.39 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -74.94 0.58 -74.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031878217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.752 kcal (2) G-P(sol) polarization free energy of solvation -74.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds