Wall clock time and date at job start Fri Apr 10 2020 22:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48508 * 109.46934 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46962 * 299.99936 * 3 2 1 6 6 H 1.48495 * 109.47153 * 60.00166 * 3 2 1 7 7 C 1.38817 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00464 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99241 * 0.02562 * 7 2 1 10 10 C 1.47864 * 126.95104 * 359.97215 * 9 7 2 11 11 C 1.56017 * 105.10605 * 182.02616 * 10 9 7 12 12 H 1.08993 * 116.25078 * 159.68258 * 11 10 9 13 13 C 1.57082 * 99.60667 * 32.80316 * 11 10 9 14 14 C 1.49293 * 126.93833 * 180.02562 * 9 7 2 15 15 H 1.08998 * 116.15382 * 16.68151 * 14 9 7 16 16 C 1.55996 * 104.31589 * 246.59298 * 14 9 7 17 17 N 1.47868 * 105.11265 * 289.11143 * 16 14 9 18 18 C 1.34782 * 126.94135 * 181.87755 * 17 16 14 19 19 O 1.21545 * 120.00005 * 179.68700 * 18 17 16 20 20 C 1.47953 * 119.99907 * 359.68386 * 18 17 16 21 21 C 1.39795 * 119.31527 * 180.25280 * 20 18 17 22 22 C 1.37013 * 119.45411 * 180.30606 * 21 20 18 23 23 C 1.39777 * 118.23483 * 359.45357 * 22 21 20 24 24 C 1.46158 * 134.24382 * 180.27171 * 23 22 21 25 25 C 1.34434 * 106.91556 * 180.02562 * 24 23 22 26 26 N 1.36724 * 110.00893 * 0.02562 * 25 24 23 27 27 H 0.96995 * 125.00554 * 179.97438 * 26 25 24 28 28 C 1.37566 * 109.99791 * 359.97438 * 26 25 24 29 29 N 1.32165 * 133.19587 * 179.97438 * 28 26 25 30 30 H 0.96996 * 119.99939 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.31434 * 63.11630 * 10 9 7 32 32 H 1.08999 * 110.39779 * 300.97894 * 10 9 7 33 33 H 1.09003 * 112.36550 * 64.27561 * 13 11 10 34 34 H 1.08999 * 112.36734 * 191.70991 * 13 11 10 35 35 H 1.09002 * 110.41309 * 170.14868 * 16 14 9 36 36 H 1.09001 * 110.20795 * 47.97172 * 16 14 9 37 37 H 1.08000 * 120.27666 * 0.05894 * 21 20 18 38 38 H 1.08002 * 120.88489 * 179.73672 * 22 21 20 39 39 H 1.07994 * 126.54142 * 359.97438 * 24 23 22 40 40 H 1.08005 * 124.99138 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1422 -2.5669 0.0006 11 6 -0.3638 -4.1103 0.0538 12 1 -1.3411 -4.4454 0.4011 13 6 0.8841 -4.5248 0.9132 14 6 1.9103 -3.7617 0.0016 15 1 2.9605 -3.8366 0.2833 16 6 1.5099 -4.3524 -1.3856 17 7 0.0521 -4.5843 -1.2996 18 6 -0.7402 -5.1207 -2.2490 19 8 -1.9296 -5.2593 -2.0408 20 6 -0.1620 -5.5406 -3.5445 21 6 -0.9978 -6.0903 -4.5210 22 6 -0.4643 -6.4859 -5.7194 23 6 0.9075 -6.3109 -5.9225 24 6 1.8184 -6.5922 -7.0304 25 6 3.0436 -6.2020 -6.6381 26 7 2.9893 -5.6949 -5.3695 27 1 3.7493 -5.3507 -4.8749 28 6 1.6979 -5.7445 -4.8980 29 7 1.1372 -5.3846 -3.7566 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5738 -2.1538 -0.9111 32 1 -0.5829 -2.0909 0.8765 33 1 0.8451 -4.1182 1.9239 34 1 1.0491 -5.6022 0.9121 35 1 2.0327 -5.2921 -1.5638 36 1 1.7334 -3.6379 -2.1778 37 1 -2.0546 -6.2059 -4.3309 38 1 -1.0880 -6.9173 -6.4884 39 1 1.5572 -7.0307 -7.9821 40 1 3.9393 -6.2788 -7.2367 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032460688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:44:09 Heat of formation + Delta-G solvation = 112.192648 kcal Electronic energy + Delta-G solvation = -25816.375837 eV Core-core repulsion = 22213.122431 eV Total energy + Delta-G solvation = -3603.253406 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61912 -40.01219 -38.34676 -37.01312 -33.70718 -33.04188 -31.45625 -30.18680 -29.59497 -28.71587 -28.42489 -25.18978 -24.64298 -23.36795 -22.71012 -20.99427 -20.59588 -19.79538 -18.68082 -18.46385 -17.48808 -16.50862 -16.28186 -15.72206 -15.39155 -14.94163 -14.78136 -14.45269 -14.10348 -13.71740 -13.46331 -13.31130 -13.13971 -13.11731 -12.20626 -12.12557 -12.04429 -11.82902 -11.56319 -11.25901 -10.97074 -10.84616 -10.72234 -10.56134 -10.55413 -10.21818 -10.04676 -9.86406 -9.59930 -9.21463 -8.65694 -8.57082 -8.22566 -7.89338 -6.86730 -5.73353 -3.07096 0.65361 1.28442 2.45436 2.61489 3.14258 3.38074 3.39423 3.42923 3.46357 4.07490 4.32062 4.44941 4.53615 4.62003 4.88251 5.09769 5.12824 5.20889 5.29397 5.41388 5.51164 5.61377 5.63607 5.71008 5.72773 5.82120 6.13075 6.19898 6.26549 6.32331 6.35630 6.39607 6.50246 6.62084 6.66978 6.79746 6.87127 7.12018 7.46318 7.52947 7.75338 7.85098 8.11149 8.14978 8.58913 9.13932 9.74874 10.44890 11.39023 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015003 B = 0.004290 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.900594 B = 6524.797863 C = 7411.663463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.080 0.920 9 N -0.598 5.598 10 C 0.175 3.825 11 C 0.096 3.904 12 H 0.116 0.884 13 C -0.151 4.151 14 C 0.133 3.867 15 H 0.104 0.896 16 C 0.109 3.891 17 N -0.583 5.583 18 C 0.580 3.420 19 O -0.549 6.549 20 C 0.131 3.869 21 C -0.142 4.142 22 C -0.041 4.041 23 C -0.138 4.138 24 C -0.204 4.204 25 C 0.070 3.930 26 N -0.580 5.580 27 H 0.422 0.578 28 C 0.279 3.721 29 N -0.455 5.455 30 H 0.253 0.747 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.151 0.849 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.345 -15.213 -11.215 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.098 0.902 9 N -0.322 5.322 10 C 0.050 3.950 11 C -0.006 4.006 12 H 0.133 0.867 13 C -0.191 4.191 14 C 0.024 3.976 15 H 0.122 0.878 16 C -0.016 4.016 17 N -0.314 5.314 18 C 0.366 3.634 19 O -0.428 6.428 20 C -0.017 4.017 21 C -0.165 4.165 22 C -0.068 4.068 23 C -0.146 4.146 24 C -0.230 4.230 25 C -0.058 4.058 26 N -0.186 5.186 27 H 0.260 0.740 28 C 0.044 3.956 29 N -0.171 5.171 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.168 0.832 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.304 -14.600 -10.466 18.731 hybrid contribution 0.384 0.838 -0.645 1.126 sum 5.688 -13.762 -11.112 18.580 Atomic orbital electron populations 1.69921 1.04919 1.25106 1.56691 1.24806 0.95668 0.97638 1.02238 0.86061 0.78647 0.83884 0.77230 1.20523 1.21861 1.21737 1.19086 0.90381 0.82115 1.44025 0.90191 1.45228 1.01316 0.99337 1.86334 1.21912 0.84781 0.86975 1.01326 1.24440 0.97900 0.97846 0.80450 0.86666 1.24152 0.96788 0.98948 0.99193 1.23300 0.96408 0.86246 0.91627 0.87784 1.23206 0.78903 0.99290 1.00224 1.49061 1.10088 1.57477 1.14782 1.17376 0.85322 0.78355 0.82302 1.90751 1.14473 1.57794 1.79789 1.20897 0.87597 0.97893 0.95289 1.21538 1.01833 0.99951 0.93136 1.20630 0.92583 0.96824 0.96748 1.20077 0.94355 1.04129 0.96023 1.21634 0.91402 1.10371 0.99543 1.21927 0.99802 0.99003 0.85033 1.41580 1.07255 1.55386 1.14375 0.74014 1.18381 0.85934 0.99933 0.91389 1.66660 1.12340 1.17721 1.20371 0.93675 0.93516 0.92515 0.89765 0.91670 0.92400 0.90756 0.83328 0.84320 0.83161 0.80456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.25 10.56 55.49 0.59 -26.66 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.18 10.38 -15.06 -0.16 -6.34 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.60 -14.78 3.03 -156.37 -0.47 -15.26 16 10 C 0.18 4.33 4.77 -1.68 -0.01 4.32 16 11 C 0.10 1.94 5.25 -62.54 -0.33 1.61 16 12 H 0.12 2.22 8.05 -51.93 -0.42 1.80 16 13 C -0.15 -2.67 6.80 -22.32 -0.15 -2.82 16 14 C 0.13 2.59 5.52 -62.58 -0.35 2.24 16 15 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 16 C 0.11 2.06 4.79 -1.69 -0.01 2.05 16 17 N -0.58 -11.72 2.95 -157.84 -0.47 -12.18 16 18 C 0.58 11.70 7.88 -12.28 -0.10 11.60 16 19 O -0.55 -12.06 16.63 5.33 0.09 -11.97 16 20 C 0.13 2.29 6.72 -82.99 -0.56 1.74 16 21 C -0.14 -2.09 9.55 -39.44 -0.38 -2.46 16 22 C -0.04 -0.51 10.17 -39.45 -0.40 -0.91 16 23 C -0.14 -1.76 6.39 -105.00 -0.67 -2.43 16 24 C -0.20 -1.89 11.08 -37.75 -0.42 -2.31 16 25 C 0.07 0.55 11.81 -16.71 -0.20 0.35 16 26 N -0.58 -5.98 6.05 -12.10 -0.07 -6.05 16 27 H 0.42 3.48 8.96 -40.82 -0.37 3.11 16 28 C 0.28 3.95 8.43 -155.79 -1.31 2.64 16 29 N -0.46 -7.60 7.06 -8.82 -0.06 -7.67 16 30 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.05 1.34 7.68 -51.93 -0.40 0.94 16 32 H 0.06 1.52 7.46 -51.93 -0.39 1.14 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.98 7.49 -51.93 -0.39 0.59 16 36 H 0.07 1.59 7.68 -51.93 -0.40 1.19 16 37 H 0.15 2.05 7.60 -52.49 -0.40 1.65 16 38 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.18 0.63 8.06 -52.48 -0.42 0.21 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -34.29 331.84 -10.39 -44.67 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.84 Total: 4.14 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: -5.13 Total: 8.99 kcal Atomic # 7 Polarization: -67.33 SS G_CDS: -0.49 Total: -67.82 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.29 -10.39 -44.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032460688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.868 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds