Wall clock time and date at job start Fri Apr 10 2020 22:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48508 * 109.46934 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46962 * 299.99936 * 3 2 1 6 6 H 1.48495 * 109.47153 * 60.00166 * 3 2 1 7 7 C 1.38817 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00464 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99241 * 0.02562 * 7 2 1 10 10 C 1.47864 * 126.95104 * 359.97215 * 9 7 2 11 11 C 1.56017 * 105.10605 * 182.02616 * 10 9 7 12 12 H 1.08993 * 116.25078 * 159.68258 * 11 10 9 13 13 C 1.57082 * 99.60667 * 32.80316 * 11 10 9 14 14 C 1.49293 * 126.93833 * 180.02562 * 9 7 2 15 15 H 1.08998 * 116.15382 * 16.68151 * 14 9 7 16 16 C 1.55996 * 104.31589 * 246.59298 * 14 9 7 17 17 N 1.47868 * 105.11265 * 289.11143 * 16 14 9 18 18 C 1.34782 * 126.94135 * 181.87755 * 17 16 14 19 19 O 1.21545 * 120.00005 * 179.68700 * 18 17 16 20 20 C 1.47953 * 119.99907 * 359.68386 * 18 17 16 21 21 C 1.39795 * 119.31527 * 180.25280 * 20 18 17 22 22 C 1.37013 * 119.45411 * 180.30606 * 21 20 18 23 23 C 1.39777 * 118.23483 * 359.45357 * 22 21 20 24 24 C 1.46158 * 134.24382 * 180.27171 * 23 22 21 25 25 C 1.34434 * 106.91556 * 180.02562 * 24 23 22 26 26 N 1.36724 * 110.00893 * 0.02562 * 25 24 23 27 27 H 0.96995 * 125.00554 * 179.97438 * 26 25 24 28 28 C 1.37566 * 109.99791 * 359.97438 * 26 25 24 29 29 N 1.32165 * 133.19587 * 179.97438 * 28 26 25 30 30 H 0.96996 * 119.99939 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.31434 * 63.11630 * 10 9 7 32 32 H 1.08999 * 110.39779 * 300.97894 * 10 9 7 33 33 H 1.09003 * 112.36550 * 64.27561 * 13 11 10 34 34 H 1.08999 * 112.36734 * 191.70991 * 13 11 10 35 35 H 1.09002 * 110.41309 * 170.14868 * 16 14 9 36 36 H 1.09001 * 110.20795 * 47.97172 * 16 14 9 37 37 H 1.08000 * 120.27666 * 0.05894 * 21 20 18 38 38 H 1.08002 * 120.88489 * 179.73672 * 22 21 20 39 39 H 1.07994 * 126.54142 * 359.97438 * 24 23 22 40 40 H 1.08005 * 124.99138 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1422 -2.5669 0.0006 11 6 -0.3638 -4.1103 0.0538 12 1 -1.3411 -4.4454 0.4011 13 6 0.8841 -4.5248 0.9132 14 6 1.9103 -3.7617 0.0016 15 1 2.9605 -3.8366 0.2833 16 6 1.5099 -4.3524 -1.3856 17 7 0.0521 -4.5843 -1.2996 18 6 -0.7402 -5.1207 -2.2490 19 8 -1.9296 -5.2593 -2.0408 20 6 -0.1620 -5.5406 -3.5445 21 6 -0.9978 -6.0903 -4.5210 22 6 -0.4643 -6.4859 -5.7194 23 6 0.9075 -6.3109 -5.9225 24 6 1.8184 -6.5922 -7.0304 25 6 3.0436 -6.2020 -6.6381 26 7 2.9893 -5.6949 -5.3695 27 1 3.7493 -5.3507 -4.8749 28 6 1.6979 -5.7445 -4.8980 29 7 1.1372 -5.3846 -3.7566 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5738 -2.1538 -0.9111 32 1 -0.5829 -2.0909 0.8765 33 1 0.8451 -4.1182 1.9239 34 1 1.0491 -5.6022 0.9121 35 1 2.0327 -5.2921 -1.5638 36 1 1.7334 -3.6379 -2.1778 37 1 -2.0546 -6.2059 -4.3309 38 1 -1.0880 -6.9173 -6.4884 39 1 1.5572 -7.0307 -7.9821 40 1 3.9393 -6.2788 -7.2367 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032460688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:44:09 Heat of formation + Delta-G solvation = 90.234173 kcal Electronic energy + Delta-G solvation = -25817.328028 eV Core-core repulsion = 22213.122431 eV Total energy + Delta-G solvation = -3604.205597 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.57158 -41.56316 -39.73441 -38.28312 -35.52181 -34.20436 -33.18800 -31.23843 -30.92672 -30.30914 -29.93003 -26.99561 -26.01006 -24.78279 -23.97492 -22.23495 -21.62678 -21.44317 -20.28366 -19.42615 -19.11622 -18.07422 -17.48684 -17.29226 -16.77209 -16.51573 -15.92673 -15.82745 -15.68702 -15.15107 -14.77885 -14.67684 -14.20475 -14.08565 -13.81861 -13.58788 -13.37177 -13.17443 -13.09969 -13.00416 -12.83860 -12.75933 -12.32600 -12.18412 -12.01189 -11.91388 -11.56961 -11.50157 -11.39426 -10.83263 -10.36432 -9.71716 -9.44890 -9.00400 -8.90687 -7.85491 -5.21269 -0.42647 0.27224 1.44498 1.45692 1.55270 1.56037 1.70781 1.91660 1.98183 2.47008 2.88994 3.18288 3.32015 3.41361 3.60664 3.72872 3.82119 3.88051 3.95973 4.01430 4.13718 4.18701 4.40828 4.59824 4.68449 4.71102 4.74573 4.85786 4.92827 4.98516 5.00692 5.10594 5.17440 5.27426 5.42967 5.45394 5.48812 5.54695 5.62967 5.92866 6.08489 6.28859 6.55912 6.81136 7.01592 7.08471 7.69266 8.40639 9.26213 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015003 B = 0.004290 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.900594 B = 6524.797863 C = 7411.663463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.072 4.072 3 Si 0.978 3.022 4 H -0.258 1.258 5 H -0.301 1.301 6 H -0.294 1.294 7 C -0.229 4.229 8 H 0.095 0.905 9 N -0.616 5.616 10 C 0.189 3.811 11 C 0.098 3.902 12 H 0.121 0.879 13 C -0.127 4.127 14 C 0.129 3.871 15 H 0.134 0.866 16 C 0.127 3.873 17 N -0.591 5.591 18 C 0.573 3.427 19 O -0.580 6.580 20 C 0.091 3.909 21 C -0.150 4.150 22 C -0.036 4.036 23 C -0.141 4.141 24 C -0.216 4.216 25 C 0.096 3.904 26 N -0.576 5.576 27 H 0.431 0.569 28 C 0.246 3.754 29 N -0.473 5.473 30 H 0.244 0.756 31 H -0.008 1.008 32 H 0.024 0.976 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.148 0.852 38 H 0.176 0.824 39 H 0.182 0.818 40 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.546 -17.405 -13.250 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.265 4.265 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.229 1.229 6 H -0.221 1.221 7 C -0.358 4.358 8 H 0.113 0.887 9 N -0.341 5.341 10 C 0.063 3.937 11 C -0.004 4.004 12 H 0.139 0.861 13 C -0.166 4.166 14 C 0.022 3.978 15 H 0.152 0.848 16 C 0.002 3.998 17 N -0.322 5.322 18 C 0.362 3.638 19 O -0.461 6.461 20 C -0.055 4.055 21 C -0.173 4.173 22 C -0.062 4.062 23 C -0.149 4.149 24 C -0.241 4.241 25 C -0.031 4.031 26 N -0.184 5.184 27 H 0.270 0.730 28 C 0.010 3.990 29 N -0.189 5.189 30 H 0.053 0.947 31 H 0.011 0.989 32 H 0.042 0.958 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.165 0.835 38 H 0.194 0.806 39 H 0.199 0.801 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 8.561 -16.834 -12.495 22.645 hybrid contribution -0.487 1.442 -0.203 1.535 sum 8.074 -15.392 -12.698 21.526 Atomic orbital electron populations 1.70170 1.06663 1.25081 1.58846 1.25680 0.96425 1.01210 1.03141 0.85006 0.78546 0.79499 0.76275 1.18143 1.22865 1.22115 1.19584 0.91249 0.83101 1.41854 0.88704 1.45486 1.01446 1.01035 1.86090 1.21502 0.85019 0.89981 0.97180 1.24327 0.99746 0.94427 0.81939 0.86121 1.24048 0.93602 1.00708 0.98235 1.23701 0.98245 0.83469 0.92375 0.84799 1.22962 0.78503 0.99578 0.98718 1.49142 1.10620 1.57672 1.14750 1.17942 0.85065 0.77623 0.83177 1.90702 1.15677 1.59096 1.80596 1.20522 0.88755 1.01362 0.94827 1.21594 1.01590 1.00337 0.93790 1.20993 0.93119 0.95767 0.96335 1.20598 0.94740 1.02748 0.96826 1.22063 0.90915 1.11206 0.99885 1.22857 1.01231 0.95426 0.83621 1.41803 1.06201 1.55082 1.15269 0.72990 1.18760 0.87856 1.01044 0.91365 1.66421 1.12102 1.18179 1.22161 0.94703 0.98939 0.95780 0.89448 0.88162 0.89802 0.93729 0.83468 0.80646 0.80109 0.75413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.01 10.56 21.65 0.23 -59.78 16 2 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 3 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.23 -12.57 10.38 84.03 0.87 -11.70 16 8 H 0.10 4.80 7.83 -2.91 -0.02 4.78 16 9 N -0.62 -31.13 3.03 -648.65 -1.96 -33.10 16 10 C 0.19 9.94 4.77 87.16 0.42 10.36 16 11 C 0.10 4.10 5.25 46.93 0.25 4.34 16 12 H 0.12 4.85 8.05 -2.39 -0.02 4.83 16 13 C -0.13 -4.29 6.80 33.45 0.23 -4.06 16 14 C 0.13 4.86 5.52 46.91 0.26 5.12 16 15 H 0.13 4.27 8.14 -2.39 -0.02 4.25 16 16 C 0.13 4.78 4.79 87.16 0.42 5.20 16 17 N -0.59 -24.48 2.95 -771.55 -2.27 -26.75 16 18 C 0.57 24.24 7.88 86.82 0.68 24.93 16 19 O -0.58 -26.91 16.63 -3.86 -0.06 -26.97 16 20 C 0.09 3.30 6.72 41.99 0.28 3.58 16 21 C -0.15 -4.48 9.55 22.36 0.21 -4.27 16 22 C -0.04 -0.83 10.17 22.35 0.23 -0.60 16 23 C -0.14 -3.25 6.39 -20.11 -0.13 -3.38 16 24 C -0.22 -3.06 11.08 23.46 0.26 -2.80 16 25 C 0.10 1.03 11.81 83.06 0.98 2.01 16 26 N -0.58 -10.15 6.05 -192.18 -1.16 -11.31 16 27 H 0.43 5.90 8.96 -92.71 -0.83 5.07 16 28 C 0.25 6.63 8.43 134.14 1.13 7.76 16 29 N -0.47 -15.86 7.06 -181.82 -1.28 -17.14 16 30 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 31 H -0.01 -0.48 7.68 -2.39 -0.02 -0.49 16 32 H 0.02 1.40 7.46 -2.39 -0.02 1.38 16 33 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.10 2.77 8.14 -2.39 -0.02 2.76 16 35 H 0.08 2.73 7.49 -2.39 -0.02 2.72 16 36 H 0.04 1.95 7.68 -2.39 -0.02 1.94 16 37 H 0.15 4.25 7.60 -2.91 -0.02 4.23 16 38 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.23 0.06 8.06 -2.91 -0.02 0.04 16 Total: -1.00 -81.24 331.84 2.31 -78.93 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.25 Total: 15.05 kcal Atomic # 6 Polarization: 26.24 SS G_CDS: 6.55 Total: 32.80 kcal Atomic # 7 Polarization: -141.62 SS G_CDS: -6.46 Total: -148.08 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.06 Total: -26.97 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -81.24 2.31 -78.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032460688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.164 kcal (2) G-P(sol) polarization free energy of solvation -81.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds