Wall clock time and date at job start Fri Apr 10 2020 22:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99821 * 2 1 4 4 H 1.48500 * 109.47178 * 270.00206 * 3 2 1 5 5 H 1.48502 * 109.47140 * 29.99973 * 3 2 1 6 6 H 1.48493 * 109.47067 * 150.00046 * 3 2 1 7 7 C 1.38810 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99185 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00434 * 359.97438 * 7 2 1 10 10 C 1.47859 * 126.94343 * 359.97438 * 9 7 2 11 11 C 1.56014 * 105.10693 * 182.03378 * 10 9 7 12 12 H 1.09002 * 116.25052 * 158.83293 * 11 10 9 13 13 C 1.57084 * 99.60425 * 32.80402 * 11 10 9 14 14 C 1.49284 * 126.94269 * 180.02562 * 9 7 2 15 15 H 1.09002 * 116.15778 * 16.66653 * 14 9 7 16 16 C 1.56023 * 104.09171 * 247.52463 * 14 9 7 17 17 N 1.49296 * 104.09227 * 287.92365 * 11 10 9 18 18 C 1.34778 * 126.94023 * 247.55505 * 17 11 10 19 19 O 1.21577 * 120.00306 * 354.37770 * 18 17 11 20 20 C 1.47603 * 119.99488 * 174.37780 * 18 17 11 21 21 C 1.38559 * 119.74102 * 186.66392 * 20 18 17 22 22 N 1.33774 * 122.06342 * 179.97438 * 21 20 18 23 23 H 0.96992 * 119.63522 * 179.97438 * 22 21 20 24 24 C 1.37230 * 120.73535 * 0.02562 * 22 21 20 25 25 N 1.31997 * 134.47825 * 179.97438 * 24 22 21 26 26 C 1.33407 * 110.93764 * 180.02562 * 25 24 22 27 27 C 1.35790 * 110.88858 * 0.02562 * 26 25 24 28 28 C 1.41382 * 106.45222 * 0.02562 * 27 26 25 29 29 C 1.38756 * 135.65128 * 180.29171 * 28 27 26 30 30 H 0.96998 * 120.00128 * 359.97438 * 1 2 3 31 31 H 1.09007 * 110.31864 * 63.12877 * 10 9 7 32 32 H 1.09005 * 110.31746 * 300.94641 * 10 9 7 33 33 H 1.09004 * 112.36714 * 64.27859 * 13 11 10 34 34 H 1.08999 * 112.36654 * 191.71240 * 13 11 10 35 35 H 1.09003 * 110.31480 * 47.67211 * 16 14 9 36 36 H 1.08993 * 110.31640 * 169.76352 * 16 14 9 37 37 H 1.08001 * 118.97201 * 359.95213 * 21 20 18 38 38 H 1.07997 * 124.55857 * 180.02562 * 26 25 24 39 39 H 1.08007 * 126.77309 * 180.02562 * 27 26 25 40 40 H 1.08007 * 120.73202 * 359.92384 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1422 -2.5669 0.0005 11 6 -0.3638 -4.1103 0.0535 12 1 -1.3359 -4.4457 0.4149 13 6 0.8847 -4.5250 0.9119 14 6 1.9103 -3.7617 -0.0005 15 1 2.9609 -3.8367 0.2801 16 6 1.5268 -4.3378 -1.3989 17 7 0.0306 -4.5810 -1.3074 18 6 -0.7796 -5.0997 -2.2514 19 8 -1.9481 -5.3181 -1.9965 20 6 -0.2481 -5.4026 -3.5947 21 6 -1.1116 -5.8042 -4.6011 22 7 -0.6804 -6.0897 -5.8348 23 1 -1.3160 -6.3681 -6.5126 24 6 0.6513 -5.9942 -6.1520 25 7 1.3586 -6.2031 -7.2467 26 6 2.6531 -5.9639 -7.0308 27 6 2.8662 -5.5756 -5.7471 28 6 1.6020 -5.5740 -5.1142 29 6 1.1289 -5.2793 -3.8435 30 1 -0.4850 0.8400 0.0004 31 1 -0.5745 -2.1536 -0.9108 32 1 -0.5808 -2.0912 0.8778 33 1 0.8465 -4.1188 1.9227 34 1 1.0498 -5.6024 0.9103 35 1 1.7558 -3.6148 -2.1818 36 1 2.0564 -5.2727 -1.5812 37 1 -2.1658 -5.8897 -4.3826 38 1 3.4276 -6.0653 -7.7766 39 1 3.8144 -5.3187 -5.2982 40 1 1.8047 -4.9630 -3.0625 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032462176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:44:12 Heat of formation + Delta-G solvation = 116.760802 kcal Electronic energy + Delta-G solvation = -25793.618899 eV Core-core repulsion = 22190.563583 eV Total energy + Delta-G solvation = -3603.055316 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.56682 -41.39858 -39.67640 -38.67640 -35.72317 -34.94794 -33.02103 -30.96341 -30.61711 -30.19138 -29.74500 -27.08978 -25.85681 -25.18818 -24.15775 -22.65038 -21.55518 -21.39162 -20.12212 -19.36607 -18.59672 -18.26483 -17.58415 -17.31042 -16.91863 -16.55617 -16.34661 -15.91708 -15.76146 -15.48101 -14.99653 -14.74131 -14.11077 -13.85033 -13.65796 -13.50581 -13.39325 -13.24876 -13.04880 -12.89182 -12.70159 -12.67012 -12.19837 -12.10843 -11.99276 -11.86907 -11.70369 -11.49693 -11.12983 -10.72410 -10.52218 -9.66006 -9.17471 -8.87592 -8.83869 -7.82789 -5.17498 -0.80745 -0.03979 1.26778 1.48817 1.49167 1.57567 1.76621 1.92110 2.39134 2.49998 2.56689 3.17913 3.25181 3.35904 3.47608 3.57550 3.68240 3.79236 3.86574 4.05113 4.11032 4.20874 4.27100 4.46980 4.56683 4.63396 4.68410 4.80860 4.89229 4.99009 5.00864 5.06487 5.15791 5.26622 5.28343 5.47880 5.55354 5.62099 5.70039 5.81493 6.12217 6.12873 6.56019 7.00954 7.06134 7.07945 7.73885 8.43405 9.28205 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.014600 B = 0.004270 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.387838 B = 6555.847232 C = 7442.349428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.068 4.068 3 Si 0.971 3.029 4 H -0.293 1.293 5 H -0.302 1.302 6 H -0.262 1.262 7 C -0.227 4.227 8 H 0.096 0.904 9 N -0.617 5.617 10 C 0.185 3.815 11 C 0.107 3.893 12 H 0.119 0.881 13 C -0.128 4.128 14 C 0.132 3.868 15 H 0.137 0.863 16 C 0.081 3.919 17 N -0.610 5.610 18 C 0.589 3.411 19 O -0.585 6.585 20 C -0.248 4.248 21 C 0.235 3.765 22 N -0.471 5.471 23 H 0.445 0.555 24 C 0.221 3.779 25 N -0.556 5.556 26 C 0.027 3.973 27 C -0.226 4.226 28 C -0.198 4.198 29 C 0.040 3.960 30 H 0.243 0.757 31 H -0.001 1.001 32 H 0.019 0.981 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.223 0.777 38 H 0.178 0.822 39 H 0.156 0.844 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.115 -15.199 -6.215 16.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.261 4.261 3 Si 0.800 3.200 4 H -0.221 1.221 5 H -0.229 1.229 6 H -0.187 1.187 7 C -0.356 4.356 8 H 0.113 0.887 9 N -0.341 5.341 10 C 0.059 3.941 11 C 0.004 3.996 12 H 0.137 0.863 13 C -0.167 4.167 14 C 0.026 3.974 15 H 0.155 0.845 16 C -0.041 4.041 17 N -0.342 5.342 18 C 0.380 3.620 19 O -0.468 6.468 20 C -0.257 4.257 21 C 0.087 3.913 22 N -0.065 5.065 23 H 0.287 0.713 24 C -0.028 4.028 25 N -0.276 5.276 26 C -0.115 4.115 27 C -0.248 4.248 28 C -0.206 4.206 29 C 0.017 3.983 30 H 0.052 0.948 31 H 0.017 0.983 32 H 0.037 0.963 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.130 0.870 37 H 0.239 0.761 38 H 0.195 0.805 39 H 0.173 0.827 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.208 -15.413 -7.199 17.054 hybrid contribution 0.071 1.772 0.275 1.794 sum 1.278 -13.641 -6.924 15.351 Atomic orbital electron populations 1.70136 1.06464 1.25025 1.58858 1.25573 0.96320 1.00904 1.03270 0.85179 0.77971 0.79736 0.77074 1.22084 1.22943 1.18680 1.19520 0.91271 0.83122 1.41717 0.88672 1.45489 1.01562 1.00980 1.86069 1.21575 0.84875 0.90333 0.97338 1.24138 0.99710 0.93899 0.81866 0.86272 1.24054 0.93620 1.00942 0.98113 1.23652 0.98560 0.83349 0.91863 0.84532 1.24321 0.78513 1.00551 1.00725 1.49960 1.09957 1.59759 1.14553 1.17461 0.84514 0.76702 0.83347 1.90730 1.17449 1.56994 1.81601 1.19152 0.94144 1.17384 0.95049 1.22588 1.01458 0.86315 0.80896 1.40295 1.06286 1.48425 1.11509 0.71315 1.20714 0.84727 1.03351 0.93961 1.69460 1.05345 1.26866 1.25933 1.22696 0.91913 1.00423 0.96502 1.21714 0.96491 1.10659 0.95971 1.20331 0.95552 1.10659 0.94056 1.22929 0.94972 0.83889 0.96478 0.94791 0.98319 0.96286 0.89891 0.87687 0.91453 0.86988 0.76056 0.80463 0.82650 0.80562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.50 10.56 21.65 0.23 -56.27 16 2 C -0.07 -3.70 5.49 84.86 0.47 -3.23 16 3 Si 0.97 44.27 29.55 68.60 2.03 46.30 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 7 C -0.23 -11.53 10.37 84.03 0.87 -10.66 16 8 H 0.10 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.62 -27.69 3.01 -648.59 -1.95 -29.65 16 10 C 0.18 8.62 4.76 87.16 0.41 9.03 16 11 C 0.11 3.72 5.20 46.93 0.24 3.96 16 12 H 0.12 4.05 8.04 -2.39 -0.02 4.03 16 13 C -0.13 -3.57 6.83 33.46 0.23 -3.34 16 14 C 0.13 4.09 5.46 46.93 0.26 4.35 16 15 H 0.14 3.49 8.14 -2.39 -0.02 3.47 16 16 C 0.08 2.26 4.40 86.36 0.38 2.64 16 17 N -0.61 -19.53 3.05 -762.40 -2.33 -21.86 16 18 C 0.59 18.58 7.85 86.72 0.68 19.26 16 19 O -0.58 -20.97 16.61 -3.96 -0.07 -21.04 16 20 C -0.25 -6.30 5.86 -20.18 -0.12 -6.42 16 21 C 0.23 4.31 10.68 84.47 0.90 5.22 16 22 N -0.47 -8.32 5.27 -186.73 -0.98 -9.30 16 23 H 0.45 4.47 8.91 -92.71 -0.83 3.64 16 24 C 0.22 5.85 8.64 135.83 1.17 7.02 16 25 N -0.56 -16.40 11.16 -188.98 -2.11 -18.51 16 26 C 0.03 0.73 11.69 83.89 0.98 1.71 16 27 C -0.23 -5.96 10.99 22.48 0.25 -5.71 16 28 C -0.20 -5.45 6.41 -20.12 -0.13 -5.58 16 29 C 0.04 1.03 8.96 22.94 0.21 1.23 16 30 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.00 -0.08 7.67 -2.38 -0.02 -0.10 16 32 H 0.02 1.01 7.46 -2.38 -0.02 1.00 16 33 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 34 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.16 7.02 -2.39 -0.02 2.14 16 36 H 0.11 2.18 6.89 -2.39 -0.02 2.16 16 37 H 0.22 2.71 7.54 -2.91 -0.02 2.69 16 38 H 0.18 3.71 8.06 -2.91 -0.02 3.69 16 39 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 40 H 0.18 4.14 2.82 -3.33 -0.01 4.13 16 Total: -1.00 -76.62 327.19 1.90 -74.72 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.28 Total: 16.12 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 6.80 Total: 19.49 kcal Atomic # 7 Polarization: -128.44 SS G_CDS: -7.14 Total: -135.59 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.07 Total: -21.04 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -76.62 1.90 -74.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032462176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.481 kcal (2) G-P(sol) polarization free energy of solvation -76.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds