Wall clock time and date at job start Fri Apr 10 2020 22:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00174 * 2 1 4 4 H 1.48502 * 109.47063 * 274.99558 * 3 2 1 5 5 H 1.48495 * 109.46933 * 34.99490 * 3 2 1 6 6 H 1.48502 * 109.46947 * 154.99648 * 3 2 1 7 7 C 1.38809 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00086 * 174.88775 * 7 2 1 9 9 N 1.36937 * 120.00322 * 354.88951 * 7 2 1 10 10 C 1.47867 * 126.94322 * 5.00393 * 9 7 2 11 11 C 1.55484 * 105.16869 * 181.92405 * 10 9 7 12 12 H 1.09005 * 116.03737 * 159.75163 * 11 10 9 13 13 C 1.57432 * 99.69081 * 32.85232 * 11 10 9 14 14 C 1.49290 * 126.94453 * 184.99508 * 9 7 2 15 15 H 1.09000 * 116.15008 * 15.85081 * 14 9 7 16 16 C 1.56018 * 104.09811 * 246.70019 * 14 9 7 17 17 N 1.47873 * 105.10389 * 288.77392 * 16 14 9 18 18 C 1.34773 * 126.94561 * 181.98033 * 17 16 14 19 19 O 1.21582 * 119.99950 * 184.64970 * 18 17 16 20 20 C 1.47586 * 119.99674 * 4.64555 * 18 17 16 21 21 C 1.40085 * 120.35655 * 172.40579 * 20 18 17 22 22 N 1.31164 * 121.12055 * 180.02562 * 21 20 18 23 23 C 1.33357 * 121.67488 * 0.02562 * 22 21 20 24 24 C 1.41853 * 133.16855 * 180.02562 * 23 22 21 25 25 C 1.34457 * 107.96243 * 179.73538 * 24 23 22 26 26 N 1.36547 * 109.71100 * 0.43427 * 25 24 23 27 27 H 0.96993 * 125.59633 * 179.81891 * 26 25 24 28 28 C 1.37855 * 108.80439 * 359.55570 * 26 25 24 29 29 C 1.38731 * 133.57099 * 180.28518 * 28 26 25 30 30 H 0.96998 * 119.99848 * 0.02562 * 1 2 3 31 31 H 1.09005 * 110.31318 * 300.89995 * 10 9 7 32 32 H 1.08997 * 110.31800 * 62.99003 * 10 9 7 33 33 H 1.08999 * 112.53801 * 191.70729 * 13 11 10 34 34 H 1.08998 * 112.31058 * 64.17099 * 13 11 10 35 35 H 1.08993 * 110.31628 * 169.86215 * 16 14 9 36 36 H 1.09003 * 110.39592 * 47.71559 * 16 14 9 37 37 H 1.08002 * 119.43618 * 0.03855 * 21 20 18 38 38 H 1.08007 * 126.01925 * 0.03002 * 24 23 22 39 39 H 1.07993 * 125.14478 * 180.25681 * 25 24 23 40 40 H 1.08000 * 120.90800 * 359.95137 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5045 2.6198 0.8029 6 1 3.5967 1.4119 0.5918 7 6 2.0102 -1.2022 0.0005 8 1 3.0871 -1.2041 -0.0828 9 7 1.3296 -2.3857 0.1067 10 6 -0.1376 -2.5685 0.1251 11 6 -0.3548 -4.0968 0.3118 12 1 -1.3324 -4.3987 0.6876 13 6 0.8968 -4.4352 1.2048 14 6 1.9190 -3.7520 0.2271 15 1 2.9738 -3.7980 0.4977 16 6 1.5169 -4.4580 -1.1049 17 7 0.0610 -4.6918 -0.9928 18 6 -0.7313 -5.3116 -1.8897 19 8 -1.9324 -5.3610 -1.7079 20 6 -0.1409 -5.9302 -3.0925 21 6 -0.9300 -6.7108 -3.9471 22 7 -0.4207 -7.2680 -5.0197 23 6 0.8642 -7.1182 -5.3437 24 6 1.6561 -7.5969 -6.4188 25 6 2.9061 -7.1302 -6.2530 26 7 2.9696 -6.3775 -5.1155 27 1 3.7621 -5.9333 -4.7759 28 6 1.7209 -6.3478 -4.5321 29 6 1.2130 -5.7453 -3.3904 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5770 -2.0188 0.9575 32 1 -0.5722 -2.2371 -0.8180 33 1 1.0656 -5.5080 1.2983 34 1 0.8580 -3.9413 2.1757 35 1 2.0457 -5.4057 -1.2055 36 1 1.7320 -3.8129 -1.9568 37 1 -1.9756 -6.8561 -3.7189 38 1 1.3141 -8.2220 -7.2305 39 1 3.7353 -7.3238 -6.9173 40 1 1.8458 -5.1496 -2.7491 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032468457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:44:15 Heat of formation + Delta-G solvation = 98.210136 kcal Electronic energy + Delta-G solvation = -25768.159559 eV Core-core repulsion = 22164.299826 eV Total energy + Delta-G solvation = -3603.859733 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.80412 -41.68523 -39.69577 -38.36156 -35.67708 -34.42574 -33.00400 -31.31412 -30.86160 -30.45054 -30.07421 -27.13470 -25.96903 -24.73265 -24.28757 -22.33571 -21.78171 -21.43943 -20.49698 -19.08982 -18.92802 -18.27615 -17.39733 -17.34345 -16.81760 -16.52383 -16.35144 -15.88185 -15.68280 -15.22587 -14.92071 -14.79436 -14.13714 -14.00840 -13.70796 -13.57530 -13.48472 -13.46100 -13.22721 -13.09511 -12.85371 -12.70456 -12.27165 -12.17154 -12.01795 -11.84051 -11.57219 -11.41892 -11.31826 -10.77376 -10.37324 -9.71438 -9.46345 -9.11329 -8.91304 -7.85306 -5.21048 -0.47645 0.19213 1.46870 1.48107 1.48262 1.57419 1.82513 1.98657 2.05067 2.48042 2.88009 3.21347 3.32046 3.35276 3.51091 3.62782 3.74954 3.80347 3.90190 4.01040 4.08258 4.18663 4.22636 4.41883 4.42738 4.56371 4.65095 4.75693 4.84655 4.86276 4.99991 5.03747 5.12362 5.21417 5.36095 5.43798 5.44605 5.52613 5.65727 5.84373 6.09208 6.52517 6.55619 6.92584 7.01598 7.04745 7.70483 8.40862 9.26035 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.004063 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.320830 B = 6889.871743 C = 7737.749116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.070 4.070 3 Si 0.975 3.025 4 H -0.294 1.294 5 H -0.303 1.303 6 H -0.258 1.258 7 C -0.230 4.230 8 H 0.100 0.900 9 N -0.615 5.615 10 C 0.184 3.816 11 C 0.101 3.899 12 H 0.115 0.885 13 C -0.127 4.127 14 C 0.137 3.863 15 H 0.144 0.856 16 C 0.079 3.921 17 N -0.602 5.602 18 C 0.575 3.425 19 O -0.586 6.586 20 C -0.190 4.190 21 C 0.143 3.857 22 N -0.484 5.484 23 C 0.086 3.914 24 C -0.236 4.236 25 C 0.122 3.878 26 N -0.565 5.565 27 H 0.440 0.560 28 C 0.013 3.987 29 C -0.058 4.058 30 H 0.243 0.757 31 H 0.023 0.977 32 H -0.008 1.008 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.236 0.764 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.715 -16.233 -8.079 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.262 4.262 3 Si 0.804 3.196 4 H -0.222 1.222 5 H -0.230 1.230 6 H -0.182 1.182 7 C -0.359 4.359 8 H 0.117 0.883 9 N -0.340 5.340 10 C 0.058 3.942 11 C -0.002 4.002 12 H 0.133 0.867 13 C -0.166 4.166 14 C 0.030 3.970 15 H 0.161 0.839 16 C -0.045 4.045 17 N -0.334 5.334 18 C 0.365 3.635 19 O -0.469 6.469 20 C -0.197 4.197 21 C -0.027 4.027 22 N -0.192 5.192 23 C -0.045 4.045 24 C -0.261 4.261 25 C -0.010 4.010 26 N -0.169 5.169 27 H 0.282 0.718 28 C -0.097 4.097 29 C -0.085 4.085 30 H 0.052 0.948 31 H 0.041 0.959 32 H 0.010 0.990 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.179 0.821 38 H 0.182 0.818 39 H 0.253 0.747 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 11.700 -16.495 -8.606 21.978 hybrid contribution 0.047 2.230 0.596 2.309 sum 11.747 -14.265 -8.010 20.141 Atomic orbital electron populations 1.70175 1.06726 1.25136 1.58525 1.25677 0.96297 1.01220 1.03052 0.85112 0.78184 0.79487 0.76842 1.22157 1.22985 1.18238 1.19553 0.91691 0.83029 1.41622 0.88283 1.45504 1.01296 1.01869 1.85314 1.21447 0.85241 0.90368 0.97108 1.24212 0.99718 0.92992 0.83234 0.86668 1.24124 0.93387 1.01473 0.97646 1.23684 0.98565 0.83056 0.91655 0.83896 1.23685 0.79635 1.00313 1.00846 1.49132 1.10189 1.54565 1.19511 1.17927 0.85367 0.77861 0.82302 1.90717 1.15573 1.62895 1.77682 1.20410 0.95227 1.05603 0.98462 1.22699 1.00058 0.91560 0.88350 1.67278 1.13176 1.21868 1.16923 1.19919 0.89366 0.97914 0.97310 1.20918 0.92837 1.10750 1.01582 1.22899 0.99252 0.90911 0.87953 1.41868 1.08577 1.44676 1.21803 0.71812 1.19020 0.88591 1.04224 0.97848 1.22086 0.94610 0.96751 0.95059 0.94763 0.95861 0.99001 0.87728 0.89755 0.87511 0.91776 0.82052 0.81751 0.74746 0.80257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.76 10.58 21.65 0.23 -57.53 16 2 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 3 Si 0.97 44.14 29.56 68.60 2.03 46.17 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.23 -11.71 10.37 84.03 0.87 -10.84 16 8 H 0.10 4.56 7.83 -2.91 -0.02 4.54 16 9 N -0.62 -28.28 3.02 -649.60 -1.96 -30.24 16 10 C 0.18 9.08 4.76 86.97 0.41 9.49 16 11 C 0.10 3.87 5.22 46.87 0.24 4.12 16 12 H 0.12 4.40 8.07 -2.38 -0.02 4.38 16 13 C -0.13 -3.77 6.83 33.59 0.23 -3.54 16 14 C 0.14 4.33 5.53 46.93 0.26 4.59 16 15 H 0.14 3.58 8.14 -2.39 -0.02 3.56 16 16 C 0.08 2.30 4.25 87.16 0.37 2.67 16 17 N -0.60 -21.75 2.95 -772.37 -2.28 -24.03 16 18 C 0.57 22.36 7.85 86.71 0.68 23.04 16 19 O -0.59 -26.72 16.74 -3.98 -0.07 -26.78 16 20 C -0.19 -6.33 5.89 -19.97 -0.12 -6.45 16 21 C 0.14 4.80 10.74 85.24 0.92 5.72 16 22 N -0.48 -15.68 10.40 -187.78 -1.95 -17.63 16 23 C 0.09 2.33 7.32 40.47 0.30 2.63 16 24 C -0.24 -4.27 10.84 22.30 0.24 -4.03 16 25 C 0.12 1.20 11.82 83.09 0.98 2.18 16 26 N -0.57 -7.37 6.14 -187.64 -1.15 -8.52 16 27 H 0.44 2.72 8.96 -92.71 -0.83 1.89 16 28 C 0.01 0.30 7.27 38.97 0.28 0.59 16 29 C -0.06 -1.54 8.82 22.78 0.20 -1.34 16 30 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.02 1.30 7.33 -2.38 -0.02 1.28 16 32 H -0.01 -0.49 7.80 -2.39 -0.02 -0.51 16 33 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.11 2.21 6.76 -2.39 -0.02 2.19 16 36 H 0.06 2.09 6.95 -2.39 -0.02 2.07 16 37 H 0.16 5.36 7.65 -2.91 -0.02 5.34 16 38 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.24 -0.34 8.06 -2.91 -0.02 -0.36 16 40 H 0.18 4.18 2.99 -2.95 -0.01 4.17 16 Total: -1.00 -80.93 326.91 1.45 -79.48 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.27 Total: 13.61 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: 6.34 Total: 25.47 kcal Atomic # 7 Polarization: -130.84 SS G_CDS: -7.12 Total: -137.96 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.07 Total: -26.78 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -80.93 1.45 -79.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032468457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.690 kcal (2) G-P(sol) polarization free energy of solvation -80.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds