Wall clock time and date at job start Fri Apr 10 2020 22:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99578 * 2 1 4 4 H 1.48495 * 109.47345 * 270.00140 * 3 2 1 5 5 H 1.48495 * 109.47381 * 30.00668 * 3 2 1 6 6 H 1.48504 * 109.46581 * 150.00436 * 3 2 1 7 7 C 1.38809 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00223 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99659 * 359.97438 * 7 2 1 10 10 C 1.47861 * 126.94871 * 0.02562 * 9 7 2 11 11 C 1.55480 * 105.17571 * 181.92280 * 10 9 7 12 12 H 1.09003 * 116.04444 * 159.75196 * 11 10 9 13 13 C 1.57432 * 99.68486 * 32.85694 * 11 10 9 14 14 C 1.49289 * 126.94160 * 180.02562 * 9 7 2 15 15 H 1.09004 * 116.15428 * 15.83888 * 14 9 7 16 16 C 1.56020 * 104.09136 * 246.69895 * 14 9 7 17 17 N 1.47864 * 105.10454 * 288.76701 * 16 14 9 18 18 C 1.34778 * 126.94403 * 181.98456 * 17 16 14 19 19 O 1.21613 * 119.99735 * 184.88782 * 18 17 16 20 20 C 1.47376 * 120.00330 * 4.88305 * 18 17 16 21 21 C 1.39258 * 120.83275 * 317.17106 * 20 18 17 22 22 N 1.31912 * 120.96994 * 180.02562 * 21 20 18 23 23 C 1.31931 * 122.71471 * 359.76328 * 22 21 20 24 24 C 1.38696 * 120.79589 * 0.47253 * 23 22 21 25 25 N 1.37742 * 134.30104 * 179.86384 * 24 23 22 26 26 H 0.96996 * 125.56381 * 359.68637 * 25 24 23 27 27 C 1.36565 * 108.87919 * 179.70834 * 25 24 23 28 28 C 1.34648 * 109.66051 * 359.97438 * 27 25 24 29 29 C 1.40989 * 118.83623 * 359.54364 * 24 23 22 30 30 H 0.97000 * 120.00080 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.31596 * 300.91147 * 10 9 7 32 32 H 1.09008 * 110.31855 * 63.09132 * 10 9 7 33 33 H 1.08999 * 112.53714 * 191.71324 * 13 11 10 34 34 H 1.08999 * 112.31728 * 64.17316 * 13 11 10 35 35 H 1.09009 * 110.31409 * 169.86181 * 16 14 9 36 36 H 1.08993 * 110.31988 * 47.67688 * 16 14 9 37 37 H 1.07995 * 119.51348 * 0.02562 * 21 20 18 38 38 H 1.07995 * 119.59845 * 180.02562 * 23 22 21 39 39 H 1.07998 * 125.17062 * 180.02562 * 27 25 24 40 40 H 1.07994 * 126.09486 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1422 -2.5669 -0.0005 11 6 -0.3648 -4.1048 0.0498 12 1 -1.3440 -4.4356 0.3960 13 6 0.8841 -4.5251 0.9113 14 6 1.9103 -3.7617 -0.0005 15 1 2.9645 -3.8351 0.2665 16 6 1.5083 -4.3456 -1.3904 17 7 0.0516 -4.5835 -1.3016 18 6 -0.7411 -5.1189 -2.2511 19 8 -1.9435 -5.1762 -2.0780 20 6 -0.1508 -5.6347 -3.4991 21 6 0.8491 -4.9271 -4.1615 22 7 1.3789 -5.3861 -5.2790 23 6 1.0065 -6.5259 -5.8291 24 6 0.0145 -7.3032 -5.2500 25 7 -0.5789 -8.5034 -5.5735 26 1 -0.3681 -9.0460 -6.3494 27 6 -1.5129 -8.8047 -4.6238 28 6 -1.5415 -7.8329 -3.6922 29 6 -0.5858 -6.8594 -4.0540 30 1 -0.4850 0.8400 0.0004 31 1 -0.5814 -2.0914 0.8765 32 1 -0.5739 -2.1534 -0.9121 33 1 1.0493 -5.6025 0.9096 34 1 0.8452 -4.1190 1.9221 35 1 2.0343 -5.2826 -1.5736 36 1 1.7270 -3.6272 -2.1803 37 1 1.1958 -3.9889 -3.7543 38 1 1.4748 -6.8541 -6.7452 39 1 -2.1335 -9.6886 -4.6200 40 1 -2.1825 -7.8030 -2.8235 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032499320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:44:25 Heat of formation + Delta-G solvation = 108.398874 kcal Electronic energy + Delta-G solvation = -25867.885130 eV Core-core repulsion = 22264.467214 eV Total energy + Delta-G solvation = -3603.417916 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.86099 -40.03515 -38.22702 -37.47995 -33.63390 -32.67790 -31.52495 -30.09896 -29.81503 -28.78573 -28.45871 -25.30444 -24.67266 -23.23436 -22.63454 -21.45579 -20.55802 -19.86467 -18.91872 -18.05642 -17.51291 -16.82278 -16.28143 -15.63387 -15.54420 -14.99922 -14.86550 -14.59935 -14.21244 -13.89829 -13.53922 -13.31610 -13.08307 -12.73137 -12.49599 -12.28410 -12.04497 -11.76384 -11.60992 -11.25983 -11.00507 -10.84554 -10.73917 -10.58355 -10.26588 -10.20369 -10.04641 -10.03969 -9.61073 -9.23545 -8.75491 -8.67823 -8.09450 -7.91544 -6.90580 -5.74151 -3.08911 0.58129 1.38076 2.55963 2.78283 3.12638 3.36808 3.40255 3.44816 3.47269 3.93347 4.39331 4.44520 4.59281 4.62662 4.81460 4.95085 5.12011 5.19009 5.21463 5.25671 5.38668 5.58877 5.62265 5.68158 5.76330 5.81068 5.97120 6.08079 6.18807 6.31202 6.37477 6.42711 6.42905 6.54954 6.61899 6.71455 6.76747 7.17678 7.44853 7.51438 7.74684 7.95801 8.07808 8.12927 8.57918 9.12635 9.73595 10.42370 11.37853 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.021914 B = 0.003841 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.413485 B = 7287.317263 C = 7832.602153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.100 3.900 12 H 0.114 0.886 13 C -0.150 4.150 14 C 0.141 3.859 15 H 0.107 0.893 16 C 0.080 3.920 17 N -0.599 5.599 18 C 0.578 3.422 19 O -0.544 6.544 20 C -0.123 4.123 21 C 0.094 3.906 22 N -0.468 5.468 23 C 0.126 3.874 24 C 0.020 3.980 25 N -0.579 5.579 26 H 0.420 0.580 27 C 0.064 3.936 28 C -0.194 4.194 29 C -0.029 4.029 30 H 0.254 0.746 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.168 0.832 38 H 0.154 0.846 39 H 0.177 0.823 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 -19.156 -8.443 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.002 4.002 12 H 0.132 0.868 13 C -0.190 4.190 14 C 0.032 3.968 15 H 0.125 0.875 16 C -0.045 4.045 17 N -0.332 5.332 18 C 0.366 3.634 19 O -0.423 6.423 20 C -0.129 4.129 21 C -0.057 4.057 22 N -0.176 5.176 23 C -0.041 4.041 24 C -0.089 4.089 25 N -0.182 5.182 26 H 0.258 0.742 27 C -0.066 4.066 28 C -0.219 4.219 29 C -0.041 4.041 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.185 0.815 38 H 0.172 0.828 39 H 0.194 0.806 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.749 -18.435 -8.854 20.464 hybrid contribution -0.215 0.203 -0.144 0.329 sum 0.534 -18.231 -8.998 20.338 Atomic orbital electron populations 1.69920 1.04941 1.25310 1.56355 1.24815 0.95667 0.97700 1.02001 0.86123 0.78551 0.83485 0.77584 1.21583 1.21730 1.20647 1.19045 0.90413 0.82041 1.44494 0.90114 1.45255 1.01327 0.99283 1.86274 1.21841 0.84725 0.87203 1.01461 1.24334 0.97771 0.97722 0.80383 0.86785 1.24201 0.96652 0.98905 0.99193 1.23193 0.96599 0.86302 0.90715 0.87478 1.23481 0.79854 0.98985 1.02166 1.49140 1.09424 1.59220 1.15423 1.17491 0.85833 0.77826 0.82293 1.90757 1.13884 1.58415 1.79253 1.20419 0.99142 0.95557 0.97787 1.22981 0.92026 0.99768 0.90961 1.67634 1.26804 1.12129 1.11019 1.21890 0.93100 0.89917 0.99196 1.19315 1.00887 0.90150 0.98573 1.41715 1.33505 1.18793 1.24185 0.74201 1.22093 0.94104 1.00578 0.89837 1.20746 1.03432 0.94786 1.02910 1.18141 0.97250 0.94439 0.94259 0.93588 0.92496 0.93371 0.91621 0.89693 0.92729 0.90738 0.81536 0.82841 0.80574 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.56 55.49 0.59 -26.23 16 2 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.23 -6.15 10.38 -15.06 -0.16 -6.31 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.31 3.02 -156.68 -0.47 -14.78 16 10 C 0.17 4.16 4.74 -1.98 -0.01 4.15 16 11 C 0.10 1.96 5.22 -62.65 -0.33 1.63 16 12 H 0.11 2.16 8.07 -51.93 -0.42 1.74 16 13 C -0.15 -2.54 6.83 -22.10 -0.15 -2.69 16 14 C 0.14 2.62 5.53 -62.55 -0.35 2.27 16 15 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 16 C 0.08 1.41 4.94 -1.68 -0.01 1.40 16 17 N -0.60 -11.45 2.95 -158.15 -0.47 -11.91 16 18 C 0.58 11.39 7.46 -12.54 -0.09 11.30 16 19 O -0.54 -12.14 17.11 5.27 0.09 -12.05 16 20 C -0.12 -2.13 5.56 -104.63 -0.58 -2.71 16 21 C 0.09 1.54 9.78 -17.14 -0.17 1.37 16 22 N -0.47 -7.01 10.30 -12.85 -0.13 -7.15 16 23 C 0.13 1.51 11.22 -17.34 -0.19 1.31 16 24 C 0.02 0.25 7.31 -84.00 -0.61 -0.37 16 25 N -0.58 -4.72 6.13 -10.63 -0.07 -4.79 16 26 H 0.42 1.76 8.96 -40.82 -0.37 1.39 16 27 C 0.06 0.55 11.84 -16.71 -0.20 0.35 16 28 C -0.19 -2.50 10.49 -39.75 -0.42 -2.92 16 29 C -0.03 -0.44 6.01 -106.58 -0.64 -1.08 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.06 1.50 7.46 -51.93 -0.39 1.11 16 32 H 0.05 1.34 7.68 -51.92 -0.40 0.94 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.07 1.40 6.07 -51.93 -0.32 1.09 16 37 H 0.17 2.82 5.61 -52.49 -0.29 2.52 16 38 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 330.49 15.07 4.98 4.98 Total: -1.00 -34.31 330.49 -9.19 -43.50 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.69 Total: 4.19 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -4.00 Total: 7.48 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: -0.55 Total: -64.86 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.31 -9.19 -43.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032499320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.900 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds