Wall clock time and date at job start Fri Apr 10 2020 22:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99578 * 2 1 4 4 H 1.48495 * 109.47345 * 270.00140 * 3 2 1 5 5 H 1.48495 * 109.47381 * 30.00668 * 3 2 1 6 6 H 1.48504 * 109.46581 * 150.00436 * 3 2 1 7 7 C 1.38809 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00223 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99659 * 359.97438 * 7 2 1 10 10 C 1.47861 * 126.94871 * 0.02562 * 9 7 2 11 11 C 1.55480 * 105.17571 * 181.92280 * 10 9 7 12 12 H 1.09003 * 116.04444 * 159.75196 * 11 10 9 13 13 C 1.57432 * 99.68486 * 32.85694 * 11 10 9 14 14 C 1.49289 * 126.94160 * 180.02562 * 9 7 2 15 15 H 1.09004 * 116.15428 * 15.83888 * 14 9 7 16 16 C 1.56020 * 104.09136 * 246.69895 * 14 9 7 17 17 N 1.47864 * 105.10454 * 288.76701 * 16 14 9 18 18 C 1.34778 * 126.94403 * 181.98456 * 17 16 14 19 19 O 1.21613 * 119.99735 * 184.88782 * 18 17 16 20 20 C 1.47376 * 120.00330 * 4.88305 * 18 17 16 21 21 C 1.39258 * 120.83275 * 317.17106 * 20 18 17 22 22 N 1.31912 * 120.96994 * 180.02562 * 21 20 18 23 23 C 1.31931 * 122.71471 * 359.76328 * 22 21 20 24 24 C 1.38696 * 120.79589 * 0.47253 * 23 22 21 25 25 N 1.37742 * 134.30104 * 179.86384 * 24 23 22 26 26 H 0.96996 * 125.56381 * 359.68637 * 25 24 23 27 27 C 1.36565 * 108.87919 * 179.70834 * 25 24 23 28 28 C 1.34648 * 109.66051 * 359.97438 * 27 25 24 29 29 C 1.40989 * 118.83623 * 359.54364 * 24 23 22 30 30 H 0.97000 * 120.00080 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.31596 * 300.91147 * 10 9 7 32 32 H 1.09008 * 110.31855 * 63.09132 * 10 9 7 33 33 H 1.08999 * 112.53714 * 191.71324 * 13 11 10 34 34 H 1.08999 * 112.31728 * 64.17316 * 13 11 10 35 35 H 1.09009 * 110.31409 * 169.86181 * 16 14 9 36 36 H 1.08993 * 110.31988 * 47.67688 * 16 14 9 37 37 H 1.07995 * 119.51348 * 0.02562 * 21 20 18 38 38 H 1.07995 * 119.59845 * 180.02562 * 23 22 21 39 39 H 1.07998 * 125.17062 * 180.02562 * 27 25 24 40 40 H 1.07994 * 126.09486 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1422 -2.5669 -0.0005 11 6 -0.3648 -4.1048 0.0498 12 1 -1.3440 -4.4356 0.3960 13 6 0.8841 -4.5251 0.9113 14 6 1.9103 -3.7617 -0.0005 15 1 2.9645 -3.8351 0.2665 16 6 1.5083 -4.3456 -1.3904 17 7 0.0516 -4.5835 -1.3016 18 6 -0.7411 -5.1189 -2.2511 19 8 -1.9435 -5.1762 -2.0780 20 6 -0.1508 -5.6347 -3.4991 21 6 0.8491 -4.9271 -4.1615 22 7 1.3789 -5.3861 -5.2790 23 6 1.0065 -6.5259 -5.8291 24 6 0.0145 -7.3032 -5.2500 25 7 -0.5789 -8.5034 -5.5735 26 1 -0.3681 -9.0460 -6.3494 27 6 -1.5129 -8.8047 -4.6238 28 6 -1.5415 -7.8329 -3.6922 29 6 -0.5858 -6.8594 -4.0540 30 1 -0.4850 0.8400 0.0004 31 1 -0.5814 -2.0914 0.8765 32 1 -0.5739 -2.1534 -0.9121 33 1 1.0493 -5.6025 0.9096 34 1 0.8452 -4.1190 1.9221 35 1 2.0343 -5.2826 -1.5736 36 1 1.7270 -3.6272 -2.1803 37 1 1.1958 -3.9889 -3.7543 38 1 1.4748 -6.8541 -6.7452 39 1 -2.1335 -9.6886 -4.6200 40 1 -2.1825 -7.8030 -2.8235 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032499320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:44:24 Heat of formation + Delta-G solvation = 84.240217 kcal Electronic energy + Delta-G solvation = -25868.932728 eV Core-core repulsion = 22264.467214 eV Total energy + Delta-G solvation = -3604.465514 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.81875 -41.56752 -39.50398 -38.82401 -35.48161 -33.92307 -33.09531 -31.29475 -30.92215 -30.33538 -30.07182 -27.02173 -26.09236 -24.75625 -23.67161 -22.71492 -21.70372 -21.45448 -20.36974 -19.41001 -18.78591 -18.30349 -17.62581 -17.32191 -16.89210 -16.24129 -15.97448 -15.85103 -15.63841 -15.54053 -15.02811 -14.75229 -14.27951 -13.85872 -13.78928 -13.67687 -13.41906 -13.34094 -13.16737 -12.90678 -12.84600 -12.69338 -12.31060 -12.17280 -12.03703 -11.86232 -11.53164 -11.48471 -11.20896 -10.76167 -10.51092 -9.66470 -9.60142 -8.99276 -8.91108 -7.83231 -5.19375 -0.47088 0.34855 1.47819 1.49602 1.56430 1.58099 1.78602 1.90674 2.07805 2.49599 2.80044 3.25412 3.34454 3.44156 3.51991 3.69666 3.80172 3.86812 3.89275 4.00743 4.11175 4.13134 4.20018 4.44359 4.53769 4.58873 4.67406 4.75175 4.85103 4.93231 5.01091 5.12153 5.14929 5.22933 5.38399 5.45235 5.48420 5.55036 5.66062 5.80395 6.10263 6.56356 6.59087 6.89088 7.03596 7.06885 7.71588 8.41967 9.27996 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.021914 B = 0.003841 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.413485 B = 7287.317263 C = 7832.602153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.292 1.292 5 H -0.301 1.301 6 H -0.261 1.261 7 C -0.230 4.230 8 H 0.097 0.903 9 N -0.615 5.615 10 C 0.187 3.813 11 C 0.102 3.898 12 H 0.116 0.884 13 C -0.125 4.125 14 C 0.137 3.863 15 H 0.138 0.862 16 C 0.090 3.910 17 N -0.602 5.602 18 C 0.575 3.425 19 O -0.583 6.583 20 C -0.157 4.157 21 C 0.092 3.908 22 N -0.494 5.494 23 C 0.147 3.853 24 C 0.015 3.985 25 N -0.551 5.551 26 H 0.445 0.555 27 C 0.116 3.884 28 C -0.247 4.247 29 C -0.053 4.053 30 H 0.243 0.757 31 H 0.022 0.978 32 H -0.005 1.005 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.148 0.852 38 H 0.201 0.799 39 H 0.231 0.769 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.800 -23.061 -10.206 25.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.219 1.219 5 H -0.228 1.228 6 H -0.185 1.185 7 C -0.359 4.359 8 H 0.114 0.886 9 N -0.340 5.340 10 C 0.061 3.939 11 C -0.001 4.001 12 H 0.134 0.866 13 C -0.164 4.164 14 C 0.030 3.970 15 H 0.156 0.844 16 C -0.034 4.034 17 N -0.334 5.334 18 C 0.364 3.636 19 O -0.465 6.465 20 C -0.163 4.163 21 C -0.058 4.058 22 N -0.203 5.203 23 C -0.020 4.020 24 C -0.096 4.096 25 N -0.155 5.155 26 H 0.288 0.712 27 C -0.017 4.017 28 C -0.272 4.272 29 C -0.065 4.065 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.013 0.987 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.165 0.835 38 H 0.217 0.783 39 H 0.247 0.753 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.804 -22.396 -10.645 24.955 hybrid contribution -0.870 1.216 0.261 1.518 sum 1.934 -21.179 -10.384 23.667 Atomic orbital electron populations 1.70169 1.06636 1.25123 1.58733 1.25664 0.96382 1.01189 1.03081 0.85085 0.77878 0.79252 0.77171 1.21889 1.22817 1.18522 1.19547 0.91300 0.83035 1.41997 0.88562 1.45499 1.01401 1.01030 1.86064 1.21420 0.85038 0.90131 0.97281 1.24203 0.99522 0.94375 0.82028 0.86593 1.24095 0.93442 1.00726 0.98159 1.23610 0.98391 0.83376 0.91599 0.84449 1.23356 0.79170 1.00022 1.00831 1.49201 1.10119 1.58950 1.15134 1.18020 0.85422 0.77101 0.83013 1.90707 1.15505 1.60065 1.80235 1.20198 1.01036 0.97591 0.97442 1.22677 0.92149 0.99216 0.91785 1.67669 1.27781 1.13966 1.10840 1.22598 0.91731 0.88194 0.99435 1.19305 1.01077 0.91545 0.97664 1.41759 1.31947 1.17297 1.24483 0.71196 1.22769 0.91968 0.99889 0.87032 1.20812 1.04873 0.96676 1.04813 1.18481 0.98217 0.94167 0.95614 0.94749 0.95954 0.98717 0.88027 0.89544 0.89411 0.92561 0.83455 0.78284 0.75312 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.48 10.56 21.65 0.23 -59.25 16 2 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 3 Si 0.98 46.08 29.55 68.60 2.03 48.11 16 4 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.23 -12.41 10.38 84.03 0.87 -11.53 16 8 H 0.10 4.78 7.83 -2.91 -0.02 4.76 16 9 N -0.62 -30.30 3.02 -649.62 -1.96 -32.26 16 10 C 0.19 9.66 4.74 86.97 0.41 10.07 16 11 C 0.10 4.13 5.22 46.87 0.24 4.38 16 12 H 0.12 4.63 8.07 -2.39 -0.02 4.61 16 13 C -0.13 -4.08 6.83 33.59 0.23 -3.85 16 14 C 0.14 4.94 5.53 46.93 0.26 5.20 16 15 H 0.14 4.16 8.14 -2.38 -0.02 4.14 16 16 C 0.09 3.17 4.94 87.16 0.43 3.60 16 17 N -0.60 -23.86 2.95 -772.52 -2.28 -26.14 16 18 C 0.57 23.91 7.46 86.65 0.65 24.56 16 19 O -0.58 -27.81 17.11 -4.07 -0.07 -27.88 16 20 C -0.16 -5.57 5.56 -19.87 -0.11 -5.68 16 21 C 0.09 3.11 9.78 84.93 0.83 3.94 16 22 N -0.49 -14.32 10.30 -194.55 -2.00 -16.32 16 23 C 0.15 3.06 11.22 84.79 0.95 4.01 16 24 C 0.01 0.31 7.31 39.00 0.29 0.60 16 25 N -0.55 -6.18 6.13 -187.55 -1.15 -7.33 16 26 H 0.45 0.90 8.96 -92.71 -0.83 0.07 16 27 C 0.12 1.46 11.84 83.13 0.98 2.45 16 28 C -0.25 -6.06 10.49 22.16 0.23 -5.83 16 29 C -0.05 -1.57 6.01 -21.14 -0.13 -1.69 16 30 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.02 1.28 7.46 -2.38 -0.02 1.26 16 32 H -0.01 -0.33 7.68 -2.38 -0.02 -0.35 16 33 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 36 H 0.06 2.20 6.07 -2.39 -0.01 2.19 16 37 H 0.15 5.36 5.61 -2.91 -0.02 5.34 16 38 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.23 0.45 8.06 -2.91 -0.02 0.43 16 40 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -83.16 330.49 1.66 -81.50 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.26 Total: 12.92 kcal Atomic # 6 Polarization: 20.04 SS G_CDS: 6.61 Total: 26.65 kcal Atomic # 7 Polarization: -134.14 SS G_CDS: -7.17 Total: -141.31 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.07 Total: -27.88 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -83.16 1.66 -81.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032499320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.742 kcal (2) G-P(sol) polarization free energy of solvation -83.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds