Wall clock time and date at job start Fri Apr 10 2020 22:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99926 * 2 1 4 4 H 1.48495 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46940 * 300.00271 * 3 2 1 6 6 H 1.48500 * 109.46532 * 60.00026 * 3 2 1 7 7 C 1.38820 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00025 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99439 * 359.97438 * 7 2 1 10 10 C 1.47864 * 126.95155 * 359.97438 * 9 7 2 11 11 C 1.56016 * 105.10725 * 182.02077 * 10 9 7 12 12 H 1.09005 * 116.25076 * 159.67890 * 11 10 9 13 13 C 1.57081 * 99.60832 * 32.80456 * 11 10 9 14 14 C 1.49295 * 126.93856 * 180.02562 * 9 7 2 15 15 H 1.08993 * 116.15313 * 16.68343 * 14 9 7 16 16 C 1.56005 * 104.31581 * 246.59468 * 14 9 7 17 17 N 1.47866 * 105.11464 * 289.11445 * 16 14 9 18 18 C 1.34774 * 126.94259 * 181.87784 * 17 16 14 19 19 O 1.21530 * 120.00197 * 179.68476 * 18 17 16 20 20 C 1.48065 * 120.00108 * 359.67929 * 18 17 16 21 21 C 1.39764 * 119.47275 * 180.02562 * 20 18 17 22 22 C 1.38132 * 119.57792 * 180.02562 * 21 20 18 23 23 C 1.39258 * 118.37659 * 359.97438 * 22 21 20 24 24 N 1.37353 * 133.61502 * 179.97438 * 23 22 21 25 25 H 0.96999 * 125.04998 * 0.02562 * 24 23 22 26 26 C 1.36718 * 109.89421 * 180.02562 * 24 23 22 27 27 C 1.34282 * 110.02508 * 0.02562 * 26 24 23 28 28 C 1.41185 * 119.09688 * 0.02562 * 23 22 21 29 29 N 1.32445 * 119.46924 * 0.02562 * 20 18 17 30 30 H 0.96994 * 120.00837 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.31762 * 63.11045 * 10 9 7 32 32 H 1.08998 * 110.39907 * 300.97266 * 10 9 7 33 33 H 1.08997 * 112.36581 * 64.27341 * 13 11 10 34 34 H 1.09001 * 112.36858 * 191.71508 * 13 11 10 35 35 H 1.09004 * 110.41682 * 170.14660 * 16 14 9 36 36 H 1.08999 * 110.20123 * 47.96925 * 16 14 9 37 37 H 1.08006 * 120.21539 * 0.02562 * 21 20 18 38 38 H 1.07997 * 120.81278 * 179.97438 * 22 21 20 39 39 H 1.07999 * 124.98331 * 179.97438 * 26 24 23 40 40 H 1.08003 * 126.48248 * 180.26753 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1422 -2.5669 0.0005 11 6 -0.3636 -4.1104 0.0531 12 1 -1.3407 -4.4457 0.4010 13 6 0.8848 -4.5253 0.9114 14 6 1.9104 -3.7617 -0.0005 15 1 2.9608 -3.8366 0.2803 16 6 1.5090 -4.3518 -1.3878 17 7 0.0512 -4.5837 -1.3009 18 6 -0.7417 -5.1196 -2.2499 19 8 -1.9308 -5.2583 -2.0410 20 6 -0.1641 -5.5392 -3.5470 21 6 -0.9966 -6.0931 -4.5235 22 6 -0.4599 -6.4858 -5.7342 23 6 0.9065 -6.3127 -5.9397 24 7 1.7483 -6.5834 -6.9908 25 1 1.4771 -6.9783 -7.8342 26 6 3.0252 -6.2136 -6.6713 27 6 3.0588 -5.7017 -5.4304 28 6 1.6894 -5.7465 -4.9103 29 7 1.1333 -5.3835 -3.7634 30 1 -0.4851 0.8399 0.0004 31 1 -0.5745 -2.1534 -0.9106 32 1 -0.5822 -2.0914 0.8770 33 1 0.8467 -4.1193 1.9222 34 1 1.0500 -5.6027 0.9095 35 1 2.0317 -5.2914 -1.5669 36 1 1.7319 -3.6368 -2.1797 37 1 -2.0528 -6.2134 -4.3327 38 1 -1.0847 -6.9165 -6.5026 39 1 3.8812 -6.3185 -7.3214 40 1 3.9295 -5.3239 -4.9150 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032517130.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:44:35 Heat of formation + Delta-G solvation = 109.895715 kcal Electronic energy + Delta-G solvation = -25775.121558 eV Core-core repulsion = 22171.768550 eV Total energy + Delta-G solvation = -3603.353009 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.64566 -39.95073 -38.30521 -36.98714 -33.59840 -32.89220 -31.48777 -30.13162 -29.53671 -28.73565 -28.38429 -25.13651 -24.68061 -23.27350 -22.65335 -21.16953 -20.44905 -19.73352 -18.62630 -18.36463 -17.36276 -16.82162 -16.24832 -15.66287 -15.28953 -14.88529 -14.79568 -14.41931 -13.99601 -13.63135 -13.38970 -13.15328 -13.09254 -12.91547 -12.78219 -12.26604 -11.98417 -11.76051 -11.47754 -11.18901 -10.90806 -10.78878 -10.64656 -10.48552 -10.45268 -10.14578 -9.98152 -9.75772 -9.53423 -9.16790 -8.59816 -8.52813 -8.26887 -7.81765 -6.80213 -5.67451 -3.00739 0.85106 1.01824 2.46173 2.78190 3.16028 3.42779 3.44229 3.47826 3.50900 4.05748 4.14087 4.50709 4.51136 4.76970 4.81267 4.94506 5.11696 5.23572 5.36454 5.47633 5.48622 5.60309 5.70232 5.78315 5.81225 5.88460 5.97492 6.23499 6.28632 6.31573 6.40006 6.47390 6.57654 6.68833 6.75290 6.79041 6.97929 7.15930 7.52481 7.58931 7.81294 7.91949 8.18582 8.22123 8.67144 9.20090 9.81044 10.51384 11.45037 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.004250 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.712726 B = 6586.651691 C = 7471.506192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.081 0.919 9 N -0.598 5.598 10 C 0.176 3.824 11 C 0.096 3.904 12 H 0.114 0.886 13 C -0.151 4.151 14 C 0.133 3.867 15 H 0.105 0.895 16 C 0.108 3.892 17 N -0.584 5.584 18 C 0.582 3.418 19 O -0.556 6.556 20 C 0.084 3.916 21 C -0.098 4.098 22 C -0.098 4.098 23 C 0.060 3.940 24 N -0.592 5.592 25 H 0.417 0.583 26 C 0.060 3.940 27 C -0.178 4.178 28 C 0.086 3.914 29 N -0.404 5.404 30 H 0.252 0.748 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.151 0.849 38 H 0.136 0.864 39 H 0.178 0.822 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.479 -16.075 -12.780 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.099 0.901 9 N -0.322 5.322 10 C 0.050 3.950 11 C -0.007 4.007 12 H 0.132 0.868 13 C -0.191 4.191 14 C 0.025 3.975 15 H 0.123 0.877 16 C -0.017 4.017 17 N -0.314 5.314 18 C 0.369 3.631 19 O -0.435 6.435 20 C -0.064 4.064 21 C -0.120 4.120 22 C -0.126 4.126 23 C -0.051 4.051 24 N -0.196 5.196 25 H 0.254 0.746 26 C -0.067 4.067 27 C -0.204 4.204 28 C -0.049 4.049 29 N -0.115 5.115 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.169 0.831 38 H 0.154 0.846 39 H 0.196 0.804 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.332 -15.544 -12.181 20.218 hybrid contribution -0.201 0.458 -1.333 1.424 sum 4.131 -15.085 -13.514 20.671 Atomic orbital electron populations 1.69922 1.04915 1.25015 1.56945 1.24800 0.95655 0.97608 1.02381 0.86059 0.78698 0.83930 0.77155 1.20483 1.21910 1.21832 1.19102 0.90422 0.82120 1.43683 0.90133 1.45228 1.01305 0.99390 1.86311 1.21902 0.84823 0.86979 1.01256 1.24428 0.97838 0.97853 0.80541 0.86783 1.24149 0.96843 0.98956 0.99155 1.23307 0.96408 0.86138 0.91670 0.87721 1.23226 0.78723 0.99576 1.00185 1.49048 1.10181 1.57512 1.14692 1.17367 0.85252 0.78197 0.82323 1.90731 1.14623 1.58128 1.80000 1.21036 0.89039 1.00628 0.95717 1.21741 1.01683 0.96691 0.91841 1.20378 0.91033 1.02936 0.98284 1.19287 0.93095 1.02343 0.90328 1.41576 1.06829 1.55849 1.15303 0.74568 1.21915 0.86853 1.00646 0.97293 1.21646 0.94969 1.08715 0.95059 1.20148 0.94518 1.00730 0.89544 1.67272 1.11427 1.12678 1.20155 0.93756 0.93552 0.92600 0.89841 0.91674 0.92137 0.90536 0.83107 0.84606 0.80446 0.82480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.58 10.56 55.49 0.59 -26.99 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.23 -6.19 10.38 -15.06 -0.16 -6.35 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.04 3.03 -156.37 -0.47 -15.52 16 10 C 0.18 4.41 4.77 -1.68 -0.01 4.40 16 11 C 0.10 1.97 5.25 -62.54 -0.33 1.64 16 12 H 0.11 2.24 8.05 -51.93 -0.42 1.82 16 13 C -0.15 -2.73 6.80 -22.32 -0.15 -2.88 16 14 C 0.13 2.66 5.52 -62.57 -0.35 2.32 16 15 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 16 C 0.11 2.11 4.79 -1.68 -0.01 2.10 16 17 N -0.58 -12.00 2.95 -157.79 -0.47 -12.46 16 18 C 0.58 11.94 7.88 -12.23 -0.10 11.84 16 19 O -0.56 -12.35 16.64 5.34 0.09 -12.26 16 20 C 0.08 1.49 6.73 -83.00 -0.56 0.93 16 21 C -0.10 -1.41 9.60 -39.05 -0.37 -1.78 16 22 C -0.10 -1.12 10.18 -39.24 -0.40 -1.51 16 23 C 0.06 0.71 7.29 -83.89 -0.61 0.10 16 24 N -0.59 -4.70 6.05 -10.58 -0.06 -4.77 16 25 H 0.42 1.81 8.96 -40.82 -0.37 1.44 16 26 C 0.06 0.46 11.81 -16.77 -0.20 0.26 16 27 C -0.18 -1.99 11.08 -37.63 -0.42 -2.41 16 28 C 0.09 1.26 7.52 -83.10 -0.62 0.64 16 29 N -0.40 -7.01 7.11 -6.43 -0.05 -7.05 16 30 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.05 1.34 7.68 -51.93 -0.40 0.95 16 32 H 0.06 1.52 7.46 -51.93 -0.39 1.13 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.07 7.50 -51.93 -0.39 0.68 16 36 H 0.08 1.70 7.69 -51.93 -0.40 1.30 16 37 H 0.15 2.03 7.61 -52.48 -0.40 1.63 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.16 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 331.97 15.07 5.00 5.00 Total: -1.00 -35.25 331.97 -9.61 -44.86 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.84 Total: 2.98 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -4.37 Total: 8.97 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.46 Total: -66.80 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.25 -9.61 -44.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032517130.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.752 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds