Wall clock time and date at job start Fri Apr 10 2020 22:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99694 * 2 1 4 4 H 1.48500 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47182 * 300.00216 * 3 2 1 6 6 H 1.48499 * 109.47223 * 60.00384 * 3 2 1 7 7 C 1.38810 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00110 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99958 * 359.97438 * 7 2 1 10 10 C 1.47868 * 126.94570 * 0.02562 * 9 7 2 11 11 C 1.58432 * 104.83185 * 182.30195 * 10 9 7 12 12 H 1.09002 * 116.62306 * 159.51835 * 11 10 9 13 13 C 1.57435 * 99.62218 * 32.32581 * 11 10 9 14 14 C 1.49293 * 126.94365 * 180.02562 * 9 7 2 15 15 H 1.08997 * 116.15361 * 15.84156 * 14 9 7 16 16 C 1.56021 * 104.09325 * 246.70129 * 14 9 7 17 17 N 1.47871 * 105.10037 * 287.92179 * 16 14 9 18 18 C 1.34781 * 126.94153 * 181.97730 * 17 16 14 19 19 O 1.21725 * 119.99851 * 180.02562 * 18 17 16 20 20 C 1.46564 * 120.00137 * 0.02733 * 18 17 16 21 21 C 1.40558 * 126.57980 * 359.97364 * 20 18 17 22 22 N 1.30739 * 108.74564 * 180.02562 * 21 20 18 23 23 N 1.40019 * 109.60372 * 359.97438 * 22 21 20 24 24 C 1.36242 * 132.01366 * 180.02562 * 23 22 21 25 25 C 1.35177 * 120.70989 * 179.97438 * 24 23 22 26 26 C 1.40165 * 120.31696 * 0.03773 * 25 24 23 27 27 C 1.36447 * 119.40842 * 359.97438 * 26 25 24 28 28 C 1.36574 * 107.90525 * 359.97438 * 23 22 21 29 29 H 0.96993 * 120.00608 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.31383 * 300.91094 * 10 9 7 31 31 H 1.08997 * 110.31474 * 62.99286 * 10 9 7 32 32 H 1.09007 * 112.53179 * 192.40743 * 13 11 10 33 33 H 1.08997 * 112.31565 * 64.87257 * 13 11 10 34 34 H 1.08995 * 110.31730 * 169.01499 * 16 14 9 35 35 H 1.09002 * 110.40225 * 46.86902 * 16 14 9 36 36 H 1.08005 * 125.62449 * 0.02562 * 21 20 18 37 37 H 1.08002 * 119.64357 * 359.97438 * 24 23 22 38 38 H 1.08001 * 119.84196 * 180.02562 * 25 24 23 39 39 H 1.07995 * 120.29115 * 179.70853 * 26 25 24 40 40 H 1.08002 * 120.37096 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1421 -2.5669 -0.0005 11 6 -0.3596 -4.1350 0.0610 12 1 -1.3325 -4.4798 0.4112 13 6 0.8995 -4.5420 0.9140 14 6 1.9104 -3.7617 -0.0005 15 1 2.9646 -3.8351 0.2665 16 6 1.5085 -4.3456 -1.3904 17 7 0.0555 -4.6030 -1.2945 18 6 -0.7353 -5.1452 -2.2417 19 8 -1.9234 -5.3002 -2.0270 20 6 -0.1648 -5.5480 -3.5303 21 6 1.1796 -5.4326 -3.9239 22 7 1.3027 -5.8968 -5.1399 23 7 0.0569 -6.3374 -5.6029 24 6 -0.3324 -6.8928 -6.7845 25 6 -1.6221 -7.2401 -6.9923 26 6 -2.5810 -7.0321 -5.9913 27 6 -2.2009 -6.4763 -4.8046 28 6 -0.8583 -6.1259 -4.6115 29 1 -0.4851 0.8399 0.0004 30 1 -0.5813 -2.0914 0.8765 31 1 -0.5739 -2.1519 -0.9112 32 1 1.0788 -5.6172 0.9073 33 1 0.8608 -4.1403 1.9265 34 1 2.0457 -5.2748 -1.5801 35 1 1.7135 -3.6227 -2.1800 36 1 1.9790 -5.0274 -3.3212 37 1 0.3974 -7.0574 -7.5635 38 1 -1.9152 -7.6798 -7.9342 39 1 -3.6121 -7.3054 -6.1595 40 1 -2.9269 -6.3087 -4.0227 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032686849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:44:51 Heat of formation + Delta-G solvation = 144.033970 kcal Electronic energy + Delta-G solvation = -25758.688165 eV Core-core repulsion = 22156.815502 eV Total energy + Delta-G solvation = -3601.872663 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.18682 -39.83694 -37.65733 -37.17828 -33.62349 -33.01058 -31.57616 -30.85914 -29.40731 -28.55478 -28.17506 -25.27542 -24.12660 -23.96652 -23.02168 -21.92732 -20.46039 -19.76063 -18.71378 -17.77746 -16.88571 -16.63261 -16.25240 -15.87715 -15.69614 -15.47910 -14.84836 -14.59378 -14.32951 -13.87965 -13.60731 -13.23991 -13.03013 -12.43766 -12.19574 -12.00307 -11.95540 -11.83760 -11.61465 -11.29387 -10.98951 -10.90024 -10.84065 -10.71481 -10.56360 -10.53146 -10.17935 -10.04312 -9.62785 -9.55246 -9.40749 -8.69516 -8.01372 -7.63615 -6.90842 -5.75375 -3.09944 0.52297 0.87811 2.06507 2.26972 3.10591 3.38189 3.43243 3.45530 3.46465 3.88044 4.12606 4.43076 4.46880 4.52492 4.67631 4.92827 5.01484 5.16669 5.23042 5.29405 5.36937 5.41579 5.47868 5.58323 5.64057 5.75131 5.84395 5.89875 6.01883 6.16609 6.22694 6.29088 6.36280 6.44746 6.56640 6.60902 6.69096 6.77356 7.39239 7.45087 7.53999 7.75110 8.11283 8.19881 8.75124 9.11780 9.72570 10.41989 11.36622 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.019559 B = 0.003720 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.237482 B = 7524.123613 C = 7856.318714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.082 0.918 9 N -0.597 5.597 10 C 0.176 3.824 11 C 0.099 3.901 12 H 0.115 0.885 13 C -0.151 4.151 14 C 0.141 3.859 15 H 0.106 0.894 16 C 0.076 3.924 17 N -0.602 5.602 18 C 0.611 3.389 19 O -0.566 6.566 20 C -0.294 4.294 21 C 0.110 3.890 22 N -0.324 5.324 23 N -0.269 5.269 24 C 0.107 3.893 25 C -0.162 4.162 26 C -0.084 4.084 27 C -0.099 4.099 28 C 0.156 3.844 29 H 0.253 0.747 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.209 0.791 37 H 0.170 0.830 38 H 0.156 0.844 39 H 0.144 0.856 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 -16.016 -10.432 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.359 4.359 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.051 3.949 11 C -0.003 4.003 12 H 0.133 0.867 13 C -0.191 4.191 14 C 0.032 3.968 15 H 0.124 0.876 16 C -0.049 4.049 17 N -0.334 5.334 18 C 0.402 3.598 19 O -0.448 6.448 20 C -0.309 4.309 21 C -0.069 4.069 22 N -0.145 5.145 23 N -0.033 5.033 24 C -0.019 4.019 25 C -0.184 4.184 26 C -0.107 4.107 27 C -0.119 4.119 28 C 0.035 3.965 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.225 0.775 37 H 0.187 0.813 38 H 0.173 0.827 39 H 0.162 0.838 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.820 -15.991 -11.297 19.596 hybrid contribution -0.040 1.167 0.392 1.232 sum -0.860 -14.823 -10.905 18.423 Atomic orbital electron populations 1.69917 1.04942 1.25191 1.56470 1.24818 0.95672 0.97710 1.02064 0.86051 0.78696 0.83784 0.77227 1.20444 1.21828 1.21747 1.19092 0.90432 0.82026 1.44310 0.90066 1.45225 1.01479 0.99247 1.86189 1.22384 0.84520 0.86781 1.01239 1.24863 0.97580 0.97555 0.80328 0.86729 1.24185 0.96792 0.98902 0.99194 1.23164 0.96613 0.86284 0.90723 0.87635 1.23549 0.80645 0.98457 1.02261 1.48876 1.09339 1.59937 1.15252 1.16401 0.84989 0.76832 0.81620 1.90713 1.15061 1.58342 1.80671 1.19812 0.93476 1.20010 0.97587 1.24834 0.97141 0.93097 0.91871 1.77600 0.97300 1.25127 1.14494 1.46124 1.07800 1.38671 1.10716 1.21538 0.97411 0.96263 0.86732 1.20896 0.91257 1.04562 1.01643 1.21303 1.00500 0.96575 0.92367 1.20936 0.93110 0.98590 0.99235 1.19320 0.90836 0.97485 0.88865 0.93635 0.92698 0.93334 0.91512 0.89794 0.92624 0.90795 0.77504 0.81309 0.82688 0.83835 0.82147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.56 55.49 0.59 -26.26 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.11 10.37 -15.06 -0.16 -6.26 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -14.29 3.03 -154.76 -0.47 -14.76 16 10 C 0.18 4.24 4.89 -0.29 0.00 4.24 16 11 C 0.10 1.94 5.35 -60.97 -0.33 1.61 16 12 H 0.11 2.18 8.05 -51.93 -0.42 1.76 16 13 C -0.15 -2.55 6.86 -22.10 -0.15 -2.70 16 14 C 0.14 2.59 5.47 -62.55 -0.34 2.25 16 15 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 16 C 0.08 1.30 4.36 -1.67 -0.01 1.30 16 17 N -0.60 -11.50 2.95 -156.61 -0.46 -11.96 16 18 C 0.61 12.10 7.86 -12.90 -0.10 12.00 16 19 O -0.57 -12.38 16.05 5.17 0.08 -12.29 16 20 C -0.29 -5.15 6.14 -104.68 -0.64 -5.80 16 21 C 0.11 1.73 10.55 -17.14 -0.18 1.55 16 22 N -0.32 -5.02 12.57 30.75 0.39 -4.64 16 23 N -0.27 -3.78 3.86 -10.55 -0.04 -3.82 16 24 C 0.11 1.03 11.17 -16.68 -0.19 0.84 16 25 C -0.16 -1.21 9.98 -39.95 -0.40 -1.61 16 26 C -0.08 -0.75 10.09 -39.50 -0.40 -1.15 16 27 C -0.10 -1.28 9.73 -39.53 -0.38 -1.67 16 28 C 0.16 2.43 6.76 -84.07 -0.57 1.86 16 29 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.05 1.45 7.46 -51.93 -0.39 1.07 16 31 H 0.05 1.36 7.67 -51.93 -0.40 0.96 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.06 0.77 6.90 -51.93 -0.36 0.41 16 35 H 0.07 1.37 7.19 -51.93 -0.37 1.00 16 36 H 0.21 2.87 4.51 -52.48 -0.24 2.63 16 37 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.16 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.16 2.19 7.12 -52.49 -0.37 1.82 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -34.32 328.57 -8.56 -42.87 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.63 Total: 2.97 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -3.94 Total: 6.22 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.00 Total: -61.44 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.32 -8.56 -42.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032686849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.907 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds