Wall clock time and date at job start Fri Apr 10 2020 22:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99694 * 2 1 4 4 H 1.48500 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47182 * 300.00216 * 3 2 1 6 6 H 1.48499 * 109.47223 * 60.00384 * 3 2 1 7 7 C 1.38810 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00110 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99958 * 359.97438 * 7 2 1 10 10 C 1.47868 * 126.94570 * 0.02562 * 9 7 2 11 11 C 1.58432 * 104.83185 * 182.30195 * 10 9 7 12 12 H 1.09002 * 116.62306 * 159.51835 * 11 10 9 13 13 C 1.57435 * 99.62218 * 32.32581 * 11 10 9 14 14 C 1.49293 * 126.94365 * 180.02562 * 9 7 2 15 15 H 1.08997 * 116.15361 * 15.84156 * 14 9 7 16 16 C 1.56021 * 104.09325 * 246.70129 * 14 9 7 17 17 N 1.47871 * 105.10037 * 287.92179 * 16 14 9 18 18 C 1.34781 * 126.94153 * 181.97730 * 17 16 14 19 19 O 1.21725 * 119.99851 * 180.02562 * 18 17 16 20 20 C 1.46564 * 120.00137 * 0.02733 * 18 17 16 21 21 C 1.40558 * 126.57980 * 359.97364 * 20 18 17 22 22 N 1.30739 * 108.74564 * 180.02562 * 21 20 18 23 23 N 1.40019 * 109.60372 * 359.97438 * 22 21 20 24 24 C 1.36242 * 132.01366 * 180.02562 * 23 22 21 25 25 C 1.35177 * 120.70989 * 179.97438 * 24 23 22 26 26 C 1.40165 * 120.31696 * 0.03773 * 25 24 23 27 27 C 1.36447 * 119.40842 * 359.97438 * 26 25 24 28 28 C 1.36574 * 107.90525 * 359.97438 * 23 22 21 29 29 H 0.96993 * 120.00608 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.31383 * 300.91094 * 10 9 7 31 31 H 1.08997 * 110.31474 * 62.99286 * 10 9 7 32 32 H 1.09007 * 112.53179 * 192.40743 * 13 11 10 33 33 H 1.08997 * 112.31565 * 64.87257 * 13 11 10 34 34 H 1.08995 * 110.31730 * 169.01499 * 16 14 9 35 35 H 1.09002 * 110.40225 * 46.86902 * 16 14 9 36 36 H 1.08005 * 125.62449 * 0.02562 * 21 20 18 37 37 H 1.08002 * 119.64357 * 359.97438 * 24 23 22 38 38 H 1.08001 * 119.84196 * 180.02562 * 25 24 23 39 39 H 1.07995 * 120.29115 * 179.70853 * 26 25 24 40 40 H 1.08002 * 120.37096 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1421 -2.5669 -0.0005 11 6 -0.3596 -4.1350 0.0610 12 1 -1.3325 -4.4798 0.4112 13 6 0.8995 -4.5420 0.9140 14 6 1.9104 -3.7617 -0.0005 15 1 2.9646 -3.8351 0.2665 16 6 1.5085 -4.3456 -1.3904 17 7 0.0555 -4.6030 -1.2945 18 6 -0.7353 -5.1452 -2.2417 19 8 -1.9234 -5.3002 -2.0270 20 6 -0.1648 -5.5480 -3.5303 21 6 1.1796 -5.4326 -3.9239 22 7 1.3027 -5.8968 -5.1399 23 7 0.0569 -6.3374 -5.6029 24 6 -0.3324 -6.8928 -6.7845 25 6 -1.6221 -7.2401 -6.9923 26 6 -2.5810 -7.0321 -5.9913 27 6 -2.2009 -6.4763 -4.8046 28 6 -0.8583 -6.1259 -4.6115 29 1 -0.4851 0.8399 0.0004 30 1 -0.5813 -2.0914 0.8765 31 1 -0.5739 -2.1519 -0.9112 32 1 1.0788 -5.6172 0.9073 33 1 0.8608 -4.1403 1.9265 34 1 2.0457 -5.2748 -1.5801 35 1 1.7135 -3.6227 -2.1800 36 1 1.9790 -5.0274 -3.3212 37 1 0.3974 -7.0574 -7.5635 38 1 -1.9152 -7.6798 -7.9342 39 1 -3.6121 -7.3054 -6.1595 40 1 -2.9269 -6.3087 -4.0227 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032686849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:44:50 Heat of formation + Delta-G solvation = 121.313158 kcal Electronic energy + Delta-G solvation = -25759.673413 eV Core-core repulsion = 22156.815502 eV Total energy + Delta-G solvation = -3602.857911 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.21833 -41.36803 -39.09570 -38.22401 -35.45198 -34.05921 -33.22945 -31.86829 -30.96364 -30.21733 -29.41318 -27.03586 -25.67028 -24.89653 -24.26682 -23.15440 -21.90195 -21.33120 -20.23686 -19.13355 -18.40279 -17.76389 -17.36020 -17.11875 -16.93496 -16.79284 -16.22303 -16.03838 -15.71637 -15.47754 -14.95731 -14.66718 -14.54126 -13.70929 -13.49010 -13.28008 -13.19734 -13.09396 -13.01313 -12.88891 -12.77893 -12.73415 -12.26692 -12.10880 -11.99615 -11.95103 -11.83876 -11.56835 -11.50543 -10.95330 -10.70860 -10.50141 -9.53543 -8.90155 -8.73013 -7.82974 -5.18979 -0.37636 -0.03273 1.04695 1.12668 1.47151 1.47863 1.58087 2.03075 2.18057 2.49207 2.56838 3.12581 3.34670 3.43049 3.52678 3.71662 3.82277 3.84965 3.90311 3.97676 4.05857 4.11619 4.20062 4.25189 4.49341 4.54312 4.66353 4.71151 4.87632 4.94060 5.04224 5.06236 5.15156 5.20195 5.22282 5.28090 5.41221 5.46630 5.59804 5.67783 5.76045 6.11130 6.32853 6.71786 7.04262 7.26638 7.72267 8.43385 9.28281 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.019559 B = 0.003720 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.237482 B = 7524.123613 C = 7856.318714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.073 4.073 3 Si 0.977 3.023 4 H -0.257 1.257 5 H -0.302 1.302 6 H -0.296 1.296 7 C -0.227 4.227 8 H 0.098 0.902 9 N -0.616 5.616 10 C 0.189 3.811 11 C 0.103 3.897 12 H 0.115 0.885 13 C -0.127 4.127 14 C 0.137 3.863 15 H 0.139 0.861 16 C 0.084 3.916 17 N -0.607 5.607 18 C 0.605 3.395 19 O -0.602 6.602 20 C -0.346 4.346 21 C 0.115 3.885 22 N -0.343 5.343 23 N -0.271 5.271 24 C 0.093 3.907 25 C -0.139 4.139 26 C -0.047 4.047 27 C -0.144 4.144 28 C 0.147 3.853 29 H 0.243 0.757 30 H 0.019 0.981 31 H -0.006 1.006 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.219 0.781 37 H 0.204 0.796 38 H 0.211 0.789 39 H 0.184 0.816 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.346 -18.943 -12.916 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.265 4.265 3 Si 0.806 3.194 4 H -0.181 1.181 5 H -0.230 1.230 6 H -0.223 1.223 7 C -0.356 4.356 8 H 0.116 0.884 9 N -0.340 5.340 10 C 0.063 3.937 11 C 0.000 4.000 12 H 0.133 0.867 13 C -0.166 4.166 14 C 0.030 3.970 15 H 0.156 0.844 16 C -0.040 4.040 17 N -0.339 5.339 18 C 0.398 3.602 19 O -0.487 6.487 20 C -0.360 4.360 21 C -0.065 4.065 22 N -0.164 5.164 23 N -0.034 5.034 24 C -0.033 4.033 25 C -0.160 4.160 26 C -0.070 4.070 27 C -0.164 4.164 28 C 0.025 3.975 29 H 0.052 0.948 30 H 0.037 0.963 31 H 0.012 0.988 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.235 0.765 37 H 0.221 0.779 38 H 0.227 0.773 39 H 0.201 0.799 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.678 -18.966 -13.789 23.459 hybrid contribution -0.618 1.902 0.897 2.191 sum 0.060 -17.065 -12.892 21.387 Atomic orbital electron populations 1.70169 1.06665 1.25004 1.58952 1.25671 0.96383 1.01218 1.03266 0.85020 0.78634 0.79621 0.76142 1.18053 1.22973 1.22347 1.19603 0.91340 0.83012 1.41610 0.88423 1.45473 1.01513 1.01087 1.85970 1.21961 0.84915 0.89930 0.96923 1.24698 0.99330 0.93954 0.82059 0.86718 1.24091 0.93652 1.00762 0.98142 1.23596 0.98442 0.83211 0.91721 0.84389 1.23474 0.79867 0.99938 1.00723 1.48929 1.10212 1.59842 1.14907 1.16837 0.84651 0.76334 0.82409 1.90664 1.16479 1.60067 1.81441 1.19666 0.94799 1.23984 0.97559 1.24899 0.96709 0.92711 0.92142 1.77490 0.98365 1.26198 1.14360 1.46376 1.06978 1.38455 1.11575 1.22534 0.99467 0.95357 0.85904 1.21607 0.89639 1.01944 1.02800 1.21895 1.02794 0.91978 0.90320 1.20957 0.91972 1.02277 1.01191 1.19557 0.92009 0.97040 0.88879 0.94796 0.96324 0.98767 0.87860 0.89793 0.88286 0.92690 0.76539 0.77911 0.77265 0.79860 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.60 10.56 21.65 0.23 -59.37 16 2 C -0.07 -4.16 5.49 84.86 0.47 -3.70 16 3 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 6 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 7 C -0.23 -12.16 10.37 84.03 0.87 -11.29 16 8 H 0.10 4.80 7.83 -2.91 -0.02 4.78 16 9 N -0.62 -30.15 3.03 -643.56 -1.95 -32.10 16 10 C 0.19 9.75 4.89 88.06 0.43 10.18 16 11 C 0.10 4.17 5.35 47.96 0.26 4.43 16 12 H 0.11 4.61 8.05 -2.39 -0.02 4.59 16 13 C -0.13 -4.10 6.86 33.59 0.23 -3.87 16 14 C 0.14 4.82 5.47 46.93 0.26 5.07 16 15 H 0.14 4.00 8.14 -2.39 -0.02 3.98 16 16 C 0.08 2.82 4.36 87.16 0.38 3.20 16 17 N -0.61 -23.88 2.95 -767.61 -2.26 -26.15 16 18 C 0.60 25.22 7.86 86.41 0.68 25.89 16 19 O -0.60 -28.12 16.05 -4.43 -0.07 -28.19 16 20 C -0.35 -12.52 6.14 -19.90 -0.12 -12.64 16 21 C 0.11 3.63 10.55 85.42 0.90 4.53 16 22 N -0.34 -10.38 12.57 -56.61 -0.71 -11.10 16 23 N -0.27 -7.21 3.86 -187.29 -0.72 -7.93 16 24 C 0.09 1.42 11.17 83.30 0.93 2.35 16 25 C -0.14 -1.31 9.98 22.03 0.22 -1.09 16 26 C -0.05 -0.65 10.09 22.32 0.23 -0.42 16 27 C -0.14 -3.67 9.73 22.30 0.22 -3.45 16 28 C 0.15 4.61 6.76 39.49 0.27 4.87 16 29 H 0.24 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.02 1.07 7.46 -2.39 -0.02 1.06 16 31 H -0.01 -0.36 7.67 -2.39 -0.02 -0.38 16 32 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 33 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.10 2.50 6.90 -2.39 -0.02 2.49 16 35 H 0.05 2.07 7.19 -2.39 -0.02 2.05 16 36 H 0.22 5.94 4.51 -2.91 -0.01 5.93 16 37 H 0.20 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.21 -0.18 8.06 -2.91 -0.02 -0.21 16 39 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 40 H 0.14 4.09 7.12 -2.91 -0.02 4.07 16 Total: -1.00 -83.61 328.57 3.83 -79.78 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.08 Total: 12.99 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 6.21 Total: 24.07 kcal Atomic # 7 Polarization: -131.22 SS G_CDS: -5.42 Total: -136.64 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.07 Total: -28.19 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -83.61 3.83 -79.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032686849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.095 kcal (2) G-P(sol) polarization free energy of solvation -83.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds