Wall clock time and date at job start Fri Apr 10 2020 22:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35877 * 117.00381 * 2 1 4 4 C 1.38831 * 119.93355 * 179.97438 * 3 2 1 5 5 C 1.37910 * 120.06748 * 179.97438 * 4 3 2 6 6 C 1.50698 * 120.03349 * 180.02562 * 5 4 3 7 7 C 1.39397 * 119.93001 * 0.02562 * 5 4 3 8 8 C 1.48323 * 120.06830 * 179.97438 * 7 5 4 9 9 C 1.38588 * 120.09766 * 89.99358 * 8 7 5 10 10 C 1.40618 * 119.57018 * 179.72243 * 9 8 7 11 11 C 1.41245 * 120.11808 * 180.29743 * 10 9 8 12 12 H 1.07991 * 119.99969 * 204.60035 * 11 10 9 13 13 C 1.39858 * 119.99808 * 24.60875 * 11 10 9 14 14 N 1.30894 * 119.99855 * 17.95361 * 13 11 10 15 15 Si 1.86790 * 120.00030 * 197.95078 * 13 11 10 16 16 H 1.48503 * 109.47318 * 60.00137 * 15 13 11 17 17 H 1.48499 * 109.47607 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47501 * 300.00464 * 15 13 11 19 19 C 1.40912 * 119.76095 * 0.28728 * 10 9 8 20 20 C 1.36423 * 120.19282 * 359.97438 * 19 10 9 21 21 C 1.39135 * 120.43298 * 0.02562 * 20 19 10 22 22 O 1.35614 * 119.87898 * 180.02562 * 21 20 19 23 23 C 1.42902 * 117.00218 * 359.97438 * 22 21 20 24 24 C 1.39403 * 119.86644 * 0.24714 * 7 5 4 25 25 C 1.50706 * 120.03235 * 179.74820 * 24 7 5 26 26 C 1.37902 * 119.92875 * 359.49467 * 24 7 5 27 27 H 1.08999 * 109.46812 * 59.99883 * 1 2 3 28 28 H 1.09001 * 109.47378 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47246 * 300.00171 * 1 2 3 30 30 H 1.07997 * 119.96671 * 359.96432 * 4 3 2 31 31 H 1.09003 * 109.47271 * 269.98361 * 6 5 4 32 32 H 1.09002 * 109.47003 * 29.98598 * 6 5 4 33 33 H 1.08996 * 109.46918 * 149.98552 * 6 5 4 34 34 H 1.07999 * 120.21698 * 0.02562 * 9 8 7 35 35 H 0.97007 * 120.00168 * 179.97438 * 14 13 11 36 36 H 1.08006 * 119.90283 * 180.02562 * 19 10 9 37 37 H 1.07997 * 119.78383 * 179.97438 * 20 19 10 38 38 H 1.09001 * 109.47057 * 180.02562 * 23 22 21 39 39 H 1.09007 * 109.47125 * 300.00476 * 23 22 21 40 40 H 1.08998 * 109.47340 * 60.00025 * 23 22 21 41 41 H 1.09005 * 109.47030 * 90.00192 * 25 24 7 42 42 H 1.09000 * 109.46779 * 209.99753 * 25 24 7 43 43 H 1.08998 * 109.47032 * 330.00079 * 25 24 7 44 44 H 1.08006 * 119.96437 * 180.23475 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2106 0.0000 4 6 3.4325 1.2816 0.0005 5 6 4.0615 2.5089 0.0000 6 6 5.5666 2.5850 0.0000 7 6 3.3037 3.6788 -0.0005 8 6 3.9770 5.0004 -0.0005 9 6 4.2932 5.6193 -1.1996 10 6 4.9262 6.8749 -1.1866 11 6 5.2479 7.5190 -2.4018 12 1 6.0488 8.2427 -2.4338 13 6 4.5292 7.2195 -3.5636 14 7 3.3622 6.6329 -3.4782 15 14 5.2347 7.6565 -5.2370 16 1 6.5305 6.9562 -5.4263 17 1 4.2859 7.2365 -6.2994 18 1 5.4491 9.1239 -5.3160 19 6 5.2383 7.4883 0.0430 20 6 4.9275 6.8678 1.2176 21 6 4.3011 5.6255 1.2142 22 8 3.9969 5.0191 2.3884 23 6 4.3488 5.7127 3.5872 24 6 1.9117 3.6043 0.0047 25 6 1.0887 4.8668 0.0099 26 6 1.2885 2.3741 -0.0002 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0190 0.3748 0.0015 31 1 5.9294 2.6041 1.0277 32 1 5.9744 1.7141 -0.5132 33 1 5.8844 3.4918 -0.5144 34 1 4.0504 5.1427 -2.1378 35 1 2.8634 6.4255 -4.2840 36 1 5.7241 8.4528 0.0556 37 1 5.1701 7.3437 2.1562 38 1 4.0509 5.1189 4.4514 39 1 5.4267 5.8732 3.6110 40 1 3.8376 6.6751 3.6135 41 1 0.8864 5.1728 -1.0166 42 1 0.1467 4.6843 0.5270 43 1 1.6379 5.6563 0.5228 44 1 0.2100 2.3157 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245680708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:44:48 Heat of formation + Delta-G solvation = -42.828154 kcal Electronic energy + Delta-G solvation = -26207.202274 eV Core-core repulsion = 22668.474254 eV Total energy + Delta-G solvation = -3538.728020 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.151 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.93254 -38.82158 -37.34867 -36.19360 -33.35700 -33.03356 -31.61419 -29.14026 -29.00054 -27.55763 -26.89521 -26.28747 -25.75868 -24.58556 -21.93001 -20.69934 -20.20480 -19.78067 -17.29936 -17.09934 -16.82008 -16.07296 -15.53661 -15.34448 -15.10570 -14.78663 -14.53871 -13.78588 -13.53156 -13.31655 -13.12858 -12.96692 -12.60969 -12.55506 -12.52498 -12.03945 -12.01208 -11.80148 -11.71629 -11.54935 -11.24746 -11.20007 -11.06131 -10.97831 -10.78353 -10.64835 -10.38872 -10.25355 -9.93360 -9.82010 -9.39525 -9.00842 -8.11793 -7.52361 -7.45504 -7.01960 -6.71479 -4.26078 1.85270 1.96529 2.72682 2.86316 3.08552 3.10501 3.20687 3.52373 3.95353 4.22322 4.35731 4.57264 5.09024 5.22411 5.25942 5.33793 5.46879 5.53379 5.57762 5.64866 5.65884 5.71574 5.81765 5.88847 5.94620 6.08893 6.12157 6.17788 6.24877 6.32922 6.35105 6.41719 6.64672 6.74131 6.87327 6.95667 6.98436 7.09934 7.17541 7.23147 7.33320 7.42047 7.49989 7.74641 7.80239 7.96991 8.19001 8.45631 8.63125 8.89227 8.95698 10.21887 Molecular weight = 312.15amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.005198 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.637585 B = 5385.315872 C = 6709.022680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.115 3.885 4 C -0.163 4.163 5 C -0.033 4.033 6 C -0.110 4.110 7 C -0.036 4.036 8 C -0.051 4.051 9 C -0.116 4.116 10 C 0.088 3.912 11 C -0.465 4.465 12 H 0.076 0.924 13 C 0.077 3.923 14 N -0.796 5.796 15 Si 0.904 3.096 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.267 1.267 19 C -0.192 4.192 20 C -0.170 4.170 21 C 0.010 3.990 22 O -0.323 6.323 23 C 0.038 3.962 24 C -0.025 4.025 25 C -0.109 4.109 26 C -0.217 4.217 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.127 0.873 35 H 0.280 0.720 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.458 -7.307 5.982 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.238 6.238 3 C 0.071 3.929 4 C -0.182 4.182 5 C -0.033 4.033 6 C -0.167 4.167 7 C -0.037 4.037 8 C -0.051 4.051 9 C -0.135 4.135 10 C 0.086 3.914 11 C -0.495 4.495 12 H 0.094 0.906 13 C -0.140 4.140 14 N -0.422 5.422 15 Si 0.729 3.271 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.211 4.211 20 C -0.188 4.188 21 C -0.034 4.034 22 O -0.239 6.239 23 C -0.058 4.058 24 C -0.025 4.025 25 C -0.166 4.166 26 C -0.236 4.236 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.140 0.860 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.145 0.855 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.674 -7.749 5.854 10.383 hybrid contribution -0.001 0.670 -0.645 0.930 sum -3.675 -7.079 5.209 9.526 Atomic orbital electron populations 1.22945 0.79197 1.03106 1.01245 1.85998 1.20762 1.27587 1.89431 1.18877 0.92120 0.83578 0.98369 1.20031 0.90986 0.97656 1.09491 1.19710 0.95962 0.91222 0.96391 1.20753 0.90899 1.02858 1.02162 1.18499 0.91644 0.92553 1.00961 1.17653 1.03322 0.93240 0.90927 1.21261 1.02491 0.94793 0.94995 1.17477 0.90947 0.90875 0.92108 1.19390 1.15888 1.21726 0.92448 0.90629 1.25822 0.93658 0.93359 1.01147 1.69816 1.09353 1.31861 1.31189 0.86433 0.79926 0.79789 0.80961 1.18898 1.20426 1.19149 1.20600 1.08795 0.99655 0.92095 1.20347 1.05069 0.95614 0.97816 1.18533 1.06579 0.94348 0.83919 1.85896 1.79602 1.46182 1.12179 1.22700 0.99381 0.97143 0.86594 1.19729 0.93219 0.94211 0.95384 1.20744 0.97938 0.95206 1.02684 1.20873 0.99152 0.91842 1.11705 0.92901 0.88871 0.92975 0.86016 0.91367 0.92311 0.90319 0.85497 0.90904 0.88790 0.88619 0.90191 0.94050 0.94061 0.90640 0.92905 0.90665 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -4.95 10.49 -19.35 -0.20 -5.15 16 3 C 0.11 1.99 6.69 -39.14 -0.26 1.72 16 4 C -0.16 -2.89 9.63 -39.48 -0.38 -3.27 16 5 C -0.03 -0.63 5.91 -104.31 -0.62 -1.25 16 6 C -0.11 -1.92 9.61 36.00 0.35 -1.57 16 7 C -0.04 -0.76 4.82 -104.88 -0.51 -1.27 16 8 C -0.05 -1.15 2.43 -104.80 -0.25 -1.41 16 9 C -0.12 -2.89 8.10 -38.56 -0.31 -3.20 16 10 C 0.09 2.26 5.57 -106.85 -0.60 1.66 16 11 C -0.46 -11.96 9.04 -37.83 -0.34 -12.30 16 12 H 0.08 1.88 7.91 -52.49 -0.41 1.46 16 13 C 0.08 1.90 5.13 -17.35 -0.09 1.81 16 14 N -0.80 -20.10 10.96 55.54 0.61 -19.49 16 15 Si 0.90 18.50 29.59 -169.99 -5.03 13.47 16 16 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 17 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 18 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 19 C -0.19 -4.53 9.72 -39.22 -0.38 -4.91 16 20 C -0.17 -3.69 8.95 -39.90 -0.36 -4.05 16 21 C 0.01 0.21 6.42 -38.43 -0.25 -0.03 16 22 O -0.32 -6.56 9.93 -18.54 -0.18 -6.74 16 23 C 0.04 0.59 9.80 101.05 0.99 1.58 16 24 C -0.03 -0.50 5.91 -104.31 -0.62 -1.11 16 25 C -0.11 -2.03 9.61 36.01 0.35 -1.68 16 26 C -0.22 -3.76 8.68 -39.48 -0.34 -4.10 16 27 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 30 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.08 1.52 6.82 -51.93 -0.35 1.16 16 34 H 0.13 3.35 6.16 -52.49 -0.32 3.03 16 35 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 36 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 37 H 0.10 1.82 6.25 -52.49 -0.33 1.49 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.04 0.60 7.65 -51.92 -0.40 0.21 16 40 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 41 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 42 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 43 H 0.07 1.54 6.83 -51.93 -0.35 1.19 16 44 H 0.12 1.75 6.28 -52.48 -0.33 1.42 16 LS Contribution 362.14 15.07 5.46 5.46 Total: -1.00 -28.22 362.14 -8.18 -36.40 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.21 Total: 8.11 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: -2.63 Total: -32.05 kcal Atomic # 7 Polarization: -20.10 SS G_CDS: 0.61 Total: -19.49 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.39 Total: -11.90 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.22 -8.18 -36.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245680708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.424 kcal (2) G-P(sol) polarization free energy of solvation -28.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds