Wall clock time and date at job start Fri Apr 10 2020 22:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35877 * 117.00381 * 2 1 4 4 C 1.38831 * 119.93355 * 179.97438 * 3 2 1 5 5 C 1.37910 * 120.06748 * 179.97438 * 4 3 2 6 6 C 1.50698 * 120.03349 * 180.02562 * 5 4 3 7 7 C 1.39397 * 119.93001 * 0.02562 * 5 4 3 8 8 C 1.48323 * 120.06830 * 179.97438 * 7 5 4 9 9 C 1.38588 * 120.09766 * 89.99358 * 8 7 5 10 10 C 1.40618 * 119.57018 * 179.72243 * 9 8 7 11 11 C 1.41245 * 120.11808 * 180.29743 * 10 9 8 12 12 H 1.07991 * 119.99969 * 204.60035 * 11 10 9 13 13 C 1.39858 * 119.99808 * 24.60875 * 11 10 9 14 14 N 1.30894 * 119.99855 * 17.95361 * 13 11 10 15 15 Si 1.86790 * 120.00030 * 197.95078 * 13 11 10 16 16 H 1.48503 * 109.47318 * 60.00137 * 15 13 11 17 17 H 1.48499 * 109.47607 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47501 * 300.00464 * 15 13 11 19 19 C 1.40912 * 119.76095 * 0.28728 * 10 9 8 20 20 C 1.36423 * 120.19282 * 359.97438 * 19 10 9 21 21 C 1.39135 * 120.43298 * 0.02562 * 20 19 10 22 22 O 1.35614 * 119.87898 * 180.02562 * 21 20 19 23 23 C 1.42902 * 117.00218 * 359.97438 * 22 21 20 24 24 C 1.39403 * 119.86644 * 0.24714 * 7 5 4 25 25 C 1.50706 * 120.03235 * 179.74820 * 24 7 5 26 26 C 1.37902 * 119.92875 * 359.49467 * 24 7 5 27 27 H 1.08999 * 109.46812 * 59.99883 * 1 2 3 28 28 H 1.09001 * 109.47378 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47246 * 300.00171 * 1 2 3 30 30 H 1.07997 * 119.96671 * 359.96432 * 4 3 2 31 31 H 1.09003 * 109.47271 * 269.98361 * 6 5 4 32 32 H 1.09002 * 109.47003 * 29.98598 * 6 5 4 33 33 H 1.08996 * 109.46918 * 149.98552 * 6 5 4 34 34 H 1.07999 * 120.21698 * 0.02562 * 9 8 7 35 35 H 0.97007 * 120.00168 * 179.97438 * 14 13 11 36 36 H 1.08006 * 119.90283 * 180.02562 * 19 10 9 37 37 H 1.07997 * 119.78383 * 179.97438 * 20 19 10 38 38 H 1.09001 * 109.47057 * 180.02562 * 23 22 21 39 39 H 1.09007 * 109.47125 * 300.00476 * 23 22 21 40 40 H 1.08998 * 109.47340 * 60.00025 * 23 22 21 41 41 H 1.09005 * 109.47030 * 90.00192 * 25 24 7 42 42 H 1.09000 * 109.46779 * 209.99753 * 25 24 7 43 43 H 1.08998 * 109.47032 * 330.00079 * 25 24 7 44 44 H 1.08006 * 119.96437 * 180.23475 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2106 0.0000 4 6 3.4325 1.2816 0.0005 5 6 4.0615 2.5089 0.0000 6 6 5.5666 2.5850 0.0000 7 6 3.3037 3.6788 -0.0005 8 6 3.9770 5.0004 -0.0005 9 6 4.2932 5.6193 -1.1996 10 6 4.9262 6.8749 -1.1866 11 6 5.2479 7.5190 -2.4018 12 1 6.0488 8.2427 -2.4338 13 6 4.5292 7.2195 -3.5636 14 7 3.3622 6.6329 -3.4782 15 14 5.2347 7.6565 -5.2370 16 1 6.5305 6.9562 -5.4263 17 1 4.2859 7.2365 -6.2994 18 1 5.4491 9.1239 -5.3160 19 6 5.2383 7.4883 0.0430 20 6 4.9275 6.8678 1.2176 21 6 4.3011 5.6255 1.2142 22 8 3.9969 5.0191 2.3884 23 6 4.3488 5.7127 3.5872 24 6 1.9117 3.6043 0.0047 25 6 1.0887 4.8668 0.0099 26 6 1.2885 2.3741 -0.0002 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0190 0.3748 0.0015 31 1 5.9294 2.6041 1.0277 32 1 5.9744 1.7141 -0.5132 33 1 5.8844 3.4918 -0.5144 34 1 4.0504 5.1427 -2.1378 35 1 2.8634 6.4255 -4.2840 36 1 5.7241 8.4528 0.0556 37 1 5.1701 7.3437 2.1562 38 1 4.0509 5.1189 4.4514 39 1 5.4267 5.8732 3.6110 40 1 3.8376 6.6751 3.6135 41 1 0.8864 5.1728 -1.0166 42 1 0.1467 4.6843 0.5270 43 1 1.6379 5.6563 0.5228 44 1 0.2100 2.3157 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245680708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:44:47 Heat of formation + Delta-G solvation = -56.097218 kcal Electronic energy + Delta-G solvation = -26207.777664 eV Core-core repulsion = 22668.474254 eV Total energy + Delta-G solvation = -3539.303410 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.151 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.32674 -40.34898 -38.70317 -37.88801 -35.16043 -34.45861 -33.15176 -30.91833 -30.51765 -28.69929 -28.29947 -27.80871 -27.03928 -26.34467 -23.46612 -22.45468 -21.62609 -21.33600 -19.08992 -18.47071 -18.32609 -17.38972 -17.10174 -16.69406 -16.57545 -16.22567 -16.16528 -15.14820 -14.95859 -14.81218 -14.73233 -14.43459 -14.13410 -14.01663 -13.93047 -13.75668 -13.50358 -13.21553 -12.99539 -12.83302 -12.77639 -12.67516 -12.65873 -12.41705 -12.38767 -12.27732 -11.78453 -11.71580 -11.54823 -11.40842 -11.12065 -10.81787 -9.52195 -9.31457 -8.88969 -8.81367 -8.53145 -6.17844 0.44212 0.53067 0.94452 1.06712 1.39788 1.49621 1.54422 2.23929 2.41718 2.73860 2.79670 2.88024 3.69809 3.86981 3.92801 4.03639 4.22164 4.34404 4.39005 4.42469 4.43366 4.49593 4.50376 4.55861 4.69085 4.71049 4.74880 4.77800 4.78827 4.82804 4.87459 5.00646 5.10109 5.12586 5.26614 5.31212 5.34734 5.42769 5.49375 5.60880 5.74635 5.84888 5.88008 5.96676 6.10741 6.33201 6.52473 6.62959 6.86963 7.00422 7.15451 8.40337 Molecular weight = 312.15amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.005198 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.637585 B = 5385.315872 C = 6709.022680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.120 3.880 4 C -0.168 4.168 5 C -0.045 4.045 6 C -0.105 4.105 7 C -0.071 4.071 8 C -0.045 4.045 9 C -0.132 4.132 10 C 0.058 3.942 11 C -0.501 4.501 12 H 0.073 0.927 13 C 0.039 3.961 14 N -0.826 5.826 15 Si 0.973 3.027 16 H -0.263 1.263 17 H -0.271 1.271 18 H -0.260 1.260 19 C -0.206 4.206 20 C -0.170 4.170 21 C 0.016 3.984 22 O -0.336 6.336 23 C 0.028 3.972 24 C -0.043 4.043 25 C -0.101 4.101 26 C -0.214 4.214 27 H 0.058 0.942 28 H 0.123 0.877 29 H 0.062 0.938 30 H 0.143 0.857 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.103 0.897 35 H 0.284 0.716 36 H 0.101 0.899 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.269 -8.913 6.976 12.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.075 3.925 4 C -0.186 4.186 5 C -0.045 4.045 6 C -0.161 4.161 7 C -0.071 4.071 8 C -0.045 4.045 9 C -0.151 4.151 10 C 0.056 3.944 11 C -0.531 4.531 12 H 0.091 0.909 13 C -0.175 4.175 14 N -0.453 5.453 15 Si 0.794 3.206 16 H -0.187 1.187 17 H -0.195 1.195 18 H -0.185 1.185 19 C -0.225 4.225 20 C -0.189 4.189 21 C -0.028 4.028 22 O -0.252 6.252 23 C -0.067 4.067 24 C -0.043 4.043 25 C -0.157 4.157 26 C -0.233 4.233 27 H 0.077 0.923 28 H 0.142 0.858 29 H 0.081 0.919 30 H 0.161 0.839 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.144 0.856 38 H 0.130 0.870 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.066 0.934 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.491 -9.356 6.876 12.450 hybrid contribution 0.152 1.032 -0.750 1.285 sum -4.339 -8.324 6.126 11.210 Atomic orbital electron populations 1.23319 0.76729 1.05503 1.02012 1.86003 1.23264 1.26311 1.88915 1.18986 0.92224 0.84373 0.96926 1.20261 0.91745 0.97703 1.08918 1.19899 0.96651 0.91368 0.96556 1.20714 0.90279 1.02626 1.02524 1.18614 0.92639 0.92233 1.03600 1.17772 1.02234 0.94001 0.90530 1.21055 1.04000 0.95044 0.95023 1.17796 0.91968 0.91529 0.93056 1.19621 1.16807 1.22967 0.93716 0.90885 1.26583 0.93585 0.93005 1.04365 1.69894 1.10361 1.32837 1.32226 0.85391 0.79086 0.79676 0.76412 1.18743 1.19542 1.18456 1.20773 1.09275 1.00199 0.92273 1.20626 1.04257 0.95553 0.98428 1.18667 1.05281 0.94109 0.84755 1.85880 1.79595 1.46993 1.12703 1.23049 1.00266 0.97964 0.85439 1.19901 0.92893 0.95378 0.96139 1.20646 0.98964 0.94243 1.01862 1.21095 1.00620 0.90895 1.10678 0.92305 0.85838 0.91947 0.83931 0.90662 0.89718 0.93118 0.87902 0.90526 0.88071 0.85617 0.87043 0.93039 0.93343 0.91994 0.89697 0.93354 0.83433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.33 -9.14 10.49 -92.16 -0.97 -10.11 16 3 C 0.12 3.90 6.69 22.55 0.15 4.05 16 4 C -0.17 -5.69 9.63 22.33 0.21 -5.47 16 5 C -0.04 -1.71 5.91 -19.66 -0.12 -1.82 16 6 C -0.10 -3.65 9.61 71.24 0.68 -2.97 16 7 C -0.07 -3.02 4.82 -20.03 -0.10 -3.11 16 8 C -0.04 -2.10 2.43 -19.98 -0.05 -2.15 16 9 C -0.13 -6.93 8.10 22.93 0.19 -6.75 16 10 C 0.06 3.15 5.57 -21.30 -0.12 3.03 16 11 C -0.50 -27.09 9.04 23.40 0.21 -26.88 16 12 H 0.07 3.81 7.91 -2.92 -0.02 3.79 16 13 C 0.04 1.97 5.13 85.22 0.44 2.41 16 14 N -0.83 -43.65 10.96 21.81 0.24 -43.41 16 15 Si 0.97 38.93 29.59 68.60 2.03 40.96 16 16 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 17 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 18 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 19 C -0.21 -10.01 9.72 22.50 0.22 -9.79 16 20 C -0.17 -7.42 8.95 22.06 0.20 -7.22 16 21 C 0.02 0.71 6.42 23.01 0.15 0.86 16 22 O -0.34 -13.32 9.93 -89.26 -0.89 -14.20 16 23 C 0.03 0.80 9.80 113.37 1.11 1.91 16 24 C -0.04 -1.68 5.91 -19.66 -0.12 -1.79 16 25 C -0.10 -3.77 9.61 71.24 0.68 -3.08 16 26 C -0.21 -7.05 8.68 22.33 0.19 -6.85 16 27 H 0.06 1.02 7.65 -2.39 -0.02 1.00 16 28 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.03 7.65 -2.39 -0.02 1.01 16 30 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 32 H 0.08 2.42 8.09 -2.39 -0.02 2.40 16 33 H 0.05 2.03 6.82 -2.39 -0.02 2.01 16 34 H 0.10 5.84 6.16 -2.91 -0.02 5.82 16 35 H 0.28 13.79 8.30 -92.70 -0.77 13.02 16 36 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 37 H 0.13 4.61 6.25 -2.91 -0.02 4.59 16 38 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.05 1.37 7.65 -2.38 -0.02 1.36 16 40 H 0.05 1.32 7.65 -2.39 -0.02 1.30 16 41 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 42 H 0.08 2.53 8.09 -2.39 -0.02 2.51 16 43 H 0.05 2.03 6.83 -2.39 -0.02 2.02 16 44 H 0.15 3.88 6.28 -2.91 -0.02 3.86 16 Total: -1.00 -63.85 362.14 6.48 -57.38 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 1.01 Total: 33.57 kcal Atomic # 6 Polarization: -69.24 SS G_CDS: 5.06 Total: -64.19 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.24 Total: -43.41 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -1.85 Total: -24.31 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -63.85 6.48 -57.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245680708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.281 kcal (2) G-P(sol) polarization free energy of solvation -63.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds