Wall clock time and date at job start Fri Apr 10 2020 22:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 115.54140 * 2 1 4 4 O 1.21285 * 119.99665 * 214.41116 * 3 2 1 5 5 N 1.34773 * 120.00137 * 34.40764 * 3 2 1 6 6 C 1.46496 * 120.00078 * 180.02562 * 5 3 2 7 7 C 1.53954 * 113.73917 * 251.67490 * 6 5 3 8 8 N 1.47583 * 86.11489 * 222.04910 * 7 6 5 9 9 C 1.36934 * 134.48898 * 204.64181 * 8 7 6 10 10 H 1.08007 * 119.99903 * 173.48143 * 9 8 7 11 11 C 1.38807 * 120.00446 * 353.48408 * 9 8 7 12 12 N 1.31625 * 119.99973 * 5.06434 * 11 9 8 13 13 Si 1.86800 * 120.00375 * 185.06610 * 11 9 8 14 14 H 1.48498 * 109.47227 * 94.98413 * 13 11 9 15 15 H 1.48503 * 109.46963 * 214.98439 * 13 11 9 16 16 H 1.48492 * 109.47016 * 334.98281 * 13 11 9 17 17 C 1.47575 * 91.01525 * 24.63995 * 8 7 6 18 18 C 1.53045 * 117.47985 * 214.41104 * 2 1 3 19 19 H 1.09001 * 119.41462 * 5.41098 * 18 2 1 20 20 C 1.53439 * 118.58542 * 161.07730 * 18 2 1 21 21 C 1.50976 * 107.03562 * 64.64201 * 20 18 2 22 22 C 1.38782 * 129.72524 * 180.33571 * 21 20 18 23 23 C 1.38013 * 120.31240 * 179.97438 * 22 21 20 24 24 C 1.38250 * 119.87921 * 359.97438 * 23 22 21 25 25 C 1.38013 * 119.88465 * 0.02562 * 24 23 22 26 26 C 1.37809 * 110.46251 * 0.51287 * 21 20 18 27 27 C 1.50954 * 110.47740 * 359.74266 * 26 21 20 28 28 H 1.08997 * 117.31684 * 139.46993 * 27 26 21 29 29 H 1.09002 * 109.47306 * 205.58971 * 1 2 3 30 30 H 1.09007 * 109.47092 * 325.58979 * 1 2 3 31 31 H 1.09002 * 109.47329 * 85.59297 * 1 2 3 32 32 H 0.97007 * 119.99490 * 0.02562 * 5 3 2 33 33 H 1.08996 * 112.94631 * 23.41000 * 6 5 3 34 34 H 1.09003 * 113.76846 * 336.35060 * 7 6 5 35 35 H 1.09000 * 113.76877 * 107.74779 * 7 6 5 36 36 H 0.96995 * 120.00484 * 180.02562 * 12 11 9 37 37 H 1.09005 * 113.76774 * 221.05774 * 17 8 7 38 38 H 1.09002 * 113.87289 * 89.67655 * 17 8 7 39 39 H 1.08999 * 109.92219 * 305.29614 * 20 18 2 40 40 H 1.08996 * 110.08889 * 184.08024 * 20 18 2 41 41 H 1.08004 * 119.83886 * 359.93893 * 22 21 20 42 42 H 1.08006 * 120.05976 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.05839 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.84054 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1797 1.3597 0.0000 4 8 3.2231 1.5332 -0.5936 5 7 1.6014 2.3830 0.6595 6 6 2.2328 3.7049 0.6591 7 6 2.8527 4.0962 2.0129 8 7 2.2786 5.4348 1.7751 9 6 2.5825 6.6993 2.2040 10 1 2.0575 7.5494 1.7939 11 6 3.5654 6.8886 3.1656 12 7 4.2741 5.8649 3.5928 13 14 3.8825 8.5960 3.8537 14 1 3.1150 8.7727 5.1127 15 1 5.3325 8.7564 4.1313 16 1 3.4521 9.6162 2.8643 17 6 1.2456 4.8634 0.8896 18 6 2.2362 -1.1202 -0.7673 19 1 1.6446 -1.8212 -1.3561 20 6 3.7057 -0.9254 -1.1635 21 6 4.5023 -0.8475 0.1166 22 6 5.8661 -0.6707 0.3032 23 6 6.3950 -0.6276 1.5772 24 6 5.5630 -0.7606 2.6733 25 6 4.2065 -0.9365 2.4895 26 6 3.6735 -0.9851 1.2090 27 6 2.2412 -1.1621 0.7662 28 1 1.6370 -1.8907 1.3067 29 1 -0.3634 -0.9269 0.4439 30 1 -0.3634 0.8479 0.5808 31 1 -0.3634 0.0790 -1.0246 32 1 0.7671 2.2440 1.1345 33 1 2.8980 3.8578 -0.1907 34 1 2.4142 3.5749 2.8639 35 1 3.9425 4.0801 2.0181 36 1 4.9607 5.9970 4.2650 37 1 1.0523 5.4599 -0.0020 38 1 0.3341 4.5671 1.4089 39 1 3.8186 0.0001 -1.7281 40 1 4.0470 -1.7696 -1.7625 41 1 6.5166 -0.5669 -0.5527 42 1 7.4570 -0.4894 1.7177 43 1 5.9738 -0.7277 3.6715 44 1 3.5572 -1.0407 3.3462 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030575021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:46:19 Heat of formation + Delta-G solvation = 83.806140 kcal Electronic energy + Delta-G solvation = -26026.394549 eV Core-core repulsion = 22525.450555 eV Total energy + Delta-G solvation = -3500.943994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.158 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.18949 -39.01834 -37.68275 -36.45905 -33.70496 -32.34060 -31.56475 -30.88503 -28.34794 -27.39595 -27.04025 -24.80284 -24.16071 -22.75810 -22.06495 -21.02114 -20.36917 -19.73816 -18.94154 -16.76135 -16.58317 -15.92464 -15.83722 -15.40920 -14.94561 -14.77010 -14.47702 -14.17164 -13.76709 -13.66926 -13.34334 -13.19386 -12.93697 -12.65703 -12.54265 -12.34829 -12.06480 -11.80408 -11.62422 -11.44058 -11.39562 -11.13144 -10.87012 -10.77319 -10.67404 -10.45633 -10.38741 -10.10605 -10.01678 -9.52483 -9.11907 -8.79427 -8.52169 -8.43121 -8.20159 -6.89830 -5.77860 -3.11160 1.45155 1.61093 2.73359 3.38915 3.42537 3.46814 3.49722 3.61261 3.94770 4.29878 4.46264 4.47502 4.69229 4.89874 4.93532 5.06936 5.15853 5.19756 5.22746 5.33939 5.46216 5.48019 5.52352 5.56454 5.63485 5.68440 5.75479 5.84388 5.90927 5.95994 6.04026 6.10793 6.23656 6.25375 6.37812 6.46071 6.59040 6.61467 6.69638 6.81642 6.85557 7.18336 7.26026 7.39449 7.58126 7.95277 7.97729 8.65400 9.03245 9.69423 10.57497 11.39274 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.004022 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.135328 B = 6959.966719 C = 8140.203297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.131 4.131 3 C 0.547 3.453 4 O -0.531 6.531 5 N -0.712 5.712 6 C 0.093 3.907 7 C 0.160 3.840 8 N -0.606 5.606 9 C -0.227 4.227 10 H 0.082 0.918 11 C -0.005 4.005 12 N -0.916 5.916 13 Si 0.911 3.089 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.279 1.279 17 C 0.111 3.889 18 C -0.117 4.117 19 H 0.124 0.876 20 C -0.063 4.063 21 C -0.057 4.057 22 C -0.110 4.110 23 C -0.112 4.112 24 C -0.127 4.127 25 C -0.094 4.094 26 C -0.085 4.085 27 C -0.093 4.093 28 H 0.123 0.877 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.394 0.606 33 H 0.110 0.890 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.255 0.745 37 H 0.048 0.952 38 H 0.034 0.966 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 -18.614 -6.885 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.135 4.135 3 C 0.332 3.668 4 O -0.408 6.408 5 N -0.362 5.362 6 C -0.012 4.012 7 C 0.033 3.967 8 N -0.333 5.333 9 C -0.354 4.354 10 H 0.100 0.900 11 C -0.202 4.202 12 N -0.562 5.562 13 Si 0.741 3.259 14 H -0.216 1.216 15 H -0.216 1.216 16 H -0.205 1.205 17 C -0.016 4.016 18 C -0.135 4.135 19 H 0.142 0.858 20 C -0.099 4.099 21 C -0.057 4.057 22 C -0.128 4.128 23 C -0.130 4.130 24 C -0.145 4.145 25 C -0.112 4.112 26 C -0.085 4.085 27 C -0.111 4.111 28 H 0.141 0.859 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.229 0.771 33 H 0.128 0.872 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.130 0.870 40 H 0.092 0.908 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.102 -18.214 -7.133 19.986 hybrid contribution -0.311 0.934 1.022 1.419 sum -4.413 -17.280 -6.111 18.852 Atomic orbital electron populations 1.21313 0.90031 1.02819 1.02764 1.22195 0.95313 0.89586 1.06387 1.19373 0.84401 0.84415 0.78596 1.90629 1.22636 1.83448 1.44109 1.46116 1.26892 1.10414 1.52791 1.23879 0.96621 0.78995 1.01700 1.22575 0.99478 0.83696 0.90941 1.45662 1.30372 1.02407 1.54860 1.18983 1.17188 0.81873 1.17388 0.90047 1.24849 0.98847 0.97616 0.98862 1.69858 1.24273 1.29034 1.33028 0.86111 0.77265 0.83361 0.79121 1.21577 1.21630 1.20463 1.22879 0.92597 0.91953 0.94137 1.22948 0.97120 0.99273 0.94187 0.85769 1.20472 0.90156 1.03643 0.95640 1.20311 0.93379 0.96839 0.95209 1.20568 0.93880 1.01209 0.97193 1.21000 0.99717 0.99793 0.92461 1.20954 0.93385 1.01318 0.98841 1.20616 0.95164 0.99780 0.95684 1.19562 0.93011 1.02346 0.93565 1.22096 0.94320 0.99191 0.95534 0.85894 0.91414 0.91463 0.91244 0.77107 0.87245 0.95393 0.91067 0.93540 0.93371 0.94846 0.87027 0.90797 0.86484 0.86082 0.86028 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.79 37.16 0.36 -0.60 16 2 C -0.13 -1.58 2.68 -153.86 -0.41 -1.99 16 3 C 0.55 8.88 6.82 -10.99 -0.07 8.80 16 4 O -0.53 -10.36 12.20 5.55 0.07 -10.29 16 5 N -0.71 -11.50 5.26 -55.34 -0.29 -11.79 16 6 C 0.09 1.87 4.43 -70.14 -0.31 1.56 16 7 C 0.16 3.95 7.23 -2.97 -0.02 3.92 16 8 N -0.61 -15.90 3.70 -178.07 -0.66 -16.56 16 9 C -0.23 -6.47 10.70 -15.06 -0.16 -6.63 16 10 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 11 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 12 N -0.92 -27.86 11.51 55.49 0.64 -27.22 16 13 Si 0.91 22.38 29.56 -169.99 -5.02 17.36 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.11 2.28 8.69 -2.98 -0.03 2.25 16 18 C -0.12 -1.29 6.66 -90.16 -0.60 -1.90 16 19 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 20 C -0.06 -0.81 5.77 -27.52 -0.16 -0.96 16 21 C -0.06 -0.84 4.97 -104.44 -0.52 -1.36 16 22 C -0.11 -1.59 10.04 -39.46 -0.40 -1.99 16 23 C -0.11 -1.54 10.05 -39.66 -0.40 -1.94 16 24 C -0.13 -1.76 10.04 -39.66 -0.40 -2.16 16 25 C -0.09 -1.34 10.04 -39.46 -0.40 -1.74 16 26 C -0.08 -1.22 5.41 -104.45 -0.57 -1.78 16 27 C -0.09 -1.09 6.61 -89.65 -0.59 -1.69 16 28 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 0.46 7.96 -51.93 -0.41 0.04 16 30 H 0.07 0.56 6.39 -51.93 -0.33 0.22 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.39 5.33 7.03 -40.82 -0.29 5.04 16 33 H 0.11 2.39 7.46 -51.93 -0.39 2.01 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 2.01 7.35 -51.93 -0.38 1.63 16 36 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 39 H 0.11 1.68 6.09 -51.93 -0.32 1.36 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 42 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 43 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -34.12 356.60 -10.97 -45.09 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.31 Total: 6.47 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -4.76 Total: -8.43 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.31 Total: -55.57 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.12 -10.97 -45.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030575021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.894 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds