Wall clock time and date at job start Fri Apr 10 2020 22:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00088 * 2 1 4 4 O 1.21587 * 119.99819 * 180.02562 * 3 2 1 5 5 N 1.34777 * 120.00165 * 359.97438 * 3 2 1 6 6 C 1.46494 * 120.00012 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47208 * 180.02562 * 6 5 3 8 8 C 1.53002 * 109.46585 * 299.99617 * 7 6 5 9 9 C 1.52991 * 109.47328 * 59.99444 * 7 6 5 10 10 C 1.53003 * 109.47106 * 180.02562 * 7 6 5 11 11 C 1.50700 * 109.46616 * 179.97438 * 10 7 6 12 12 H 1.07995 * 120.00429 * 359.97438 * 11 10 7 13 13 C 1.37882 * 119.99825 * 180.02562 * 11 10 7 14 14 N 1.31519 * 119.99588 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00450 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46902 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47405 * 119.99401 * 15 13 11 18 18 H 1.48493 * 109.47424 * 239.99983 * 15 13 11 19 19 C 1.46501 * 119.99876 * 179.97438 * 2 1 3 20 20 H 1.09007 * 109.46947 * 121.22729 * 19 2 1 21 21 C 1.52992 * 109.47661 * 241.23056 * 19 2 1 22 22 C 1.52999 * 109.47194 * 59.99943 * 21 19 2 23 23 C 1.52999 * 109.47240 * 59.99978 * 22 21 19 24 24 C 1.53002 * 109.47258 * 300.00638 * 23 22 21 25 25 C 1.52998 * 109.47139 * 1.23408 * 19 2 1 26 26 H 1.08998 * 109.47621 * 179.97438 * 25 19 2 27 27 O 1.42900 * 109.47363 * 59.99291 * 25 19 2 28 28 H 1.09007 * 109.47195 * 275.94535 * 1 2 3 29 29 H 1.09000 * 109.46982 * 35.93743 * 1 2 3 30 30 H 1.08997 * 109.47594 * 155.93874 * 1 2 3 31 31 H 0.96998 * 119.99840 * 0.02562 * 5 3 2 32 32 H 1.09002 * 109.47124 * 300.00480 * 6 5 3 33 33 H 1.09001 * 109.47450 * 60.00192 * 6 5 3 34 34 H 1.09002 * 109.46980 * 60.00359 * 8 7 6 35 35 H 1.09002 * 109.47200 * 179.97438 * 8 7 6 36 36 H 1.08999 * 109.47674 * 300.00097 * 8 7 6 37 37 H 1.09007 * 109.47114 * 60.00255 * 9 7 6 38 38 H 1.09002 * 109.47556 * 179.97438 * 9 7 6 39 39 H 1.08994 * 109.47590 * 300.00763 * 9 7 6 40 40 H 1.08994 * 109.46730 * 299.99633 * 10 7 6 41 41 H 1.08999 * 109.47242 * 59.99848 * 10 7 6 42 42 H 0.97006 * 119.99599 * 180.02562 * 14 13 11 43 43 H 1.09005 * 109.47335 * 300.00687 * 21 19 2 44 44 H 1.08998 * 109.47629 * 180.02562 * 21 19 2 45 45 H 1.09008 * 109.47405 * 300.00459 * 22 21 19 46 46 H 1.09001 * 109.47828 * 180.02562 * 22 21 19 47 47 H 1.09008 * 109.46732 * 60.00459 * 23 22 21 48 48 H 1.08995 * 109.47830 * 180.02562 * 23 22 21 49 49 H 1.08997 * 109.47169 * 179.97438 * 24 23 22 50 50 H 1.08998 * 109.46776 * 299.99138 * 24 23 22 51 51 H 0.96701 * 114.00419 * 179.97438 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1671 -0.0005 5 7 1.4651 2.3344 -0.0005 6 6 2.1976 3.6031 -0.0011 7 6 1.2034 4.7661 -0.0010 8 6 0.3234 4.6847 -1.2500 9 6 0.3242 4.6853 1.2485 10 6 1.9685 6.0911 -0.0022 11 6 0.9892 7.2365 -0.0027 12 1 -0.0726 7.0392 -0.0026 13 6 1.4488 8.5364 -0.0044 14 7 2.7419 8.7767 -0.0050 15 14 0.2350 9.9563 -0.0057 16 1 -1.1509 9.4228 -0.0054 17 1 0.4457 10.7888 1.2058 18 1 0.4452 10.7860 -1.2192 19 6 2.1975 -1.2688 0.0006 20 1 2.8406 -1.3174 -0.8782 21 6 3.0537 -1.3629 1.2649 22 6 2.1511 -1.2946 2.4984 23 6 1.1570 -2.4573 2.4680 24 6 0.3008 -2.3633 1.2035 25 6 1.2035 -2.4315 -0.0300 26 1 1.7484 -3.3755 -0.0300 27 8 0.4037 -2.3436 -1.2109 28 1 -0.3634 0.1065 1.0222 29 1 -0.3633 0.8321 -0.6031 30 1 -0.3634 -0.9383 -0.4190 31 1 0.4951 2.3344 -0.0005 32 1 2.8243 3.6612 0.8888 33 1 2.8242 3.6605 -0.8911 34 1 -0.2216 3.7408 -1.2495 35 1 -0.3852 5.5130 -1.2497 36 1 0.9497 4.7422 -2.1402 37 1 0.9512 4.7432 2.1383 38 1 -0.3838 5.5141 1.2488 39 1 -0.2208 3.7414 1.2490 40 1 2.5957 6.1492 0.8873 41 1 2.5945 6.1483 -0.8926 42 1 3.0652 9.6912 -0.0058 43 1 3.7618 -0.5345 1.2868 44 1 3.5990 -2.3066 1.2651 45 1 1.6060 -0.3506 2.4981 46 1 2.7611 -1.3612 3.3993 47 1 1.7021 -3.4013 2.4684 48 1 0.5137 -2.4085 3.3464 49 1 -0.4071 -3.1918 1.1815 50 1 -0.2442 -1.4193 1.2031 51 1 -0.2501 -3.0509 -1.2968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358682438.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:46:16 Heat of formation + Delta-G solvation = -75.731941 kcal Electronic energy + Delta-G solvation = -28074.356976 eV Core-core repulsion = 24395.019066 eV Total energy + Delta-G solvation = -3679.337910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97762 -38.93693 -37.06700 -35.92777 -34.49752 -33.40827 -32.03653 -30.94451 -29.40395 -27.12033 -26.64762 -26.46546 -25.79424 -23.24852 -22.84220 -22.13914 -20.54663 -19.51486 -18.26575 -17.71330 -17.34597 -16.31815 -16.10121 -15.94849 -15.60526 -14.78746 -14.50567 -14.39038 -14.27107 -13.84898 -13.73847 -13.54109 -13.18262 -12.95811 -12.81259 -12.71698 -12.45618 -12.16884 -12.09749 -12.03408 -11.97455 -11.47490 -11.10672 -10.99301 -10.84313 -10.81538 -10.80883 -10.60830 -10.44562 -10.35097 -10.20078 -10.03981 -9.82768 -9.59887 -9.14896 -8.87781 -8.74709 -8.33517 -8.29206 -5.97333 -3.98326 2.82381 3.31742 3.39749 3.42172 3.48871 3.70324 4.17910 4.35311 4.46719 4.50914 4.63932 4.90380 4.95710 4.99795 5.11621 5.19468 5.25617 5.33459 5.38269 5.40787 5.56125 5.60690 5.67061 5.70380 5.76467 5.80245 5.85289 5.90964 5.97584 6.12467 6.20377 6.23216 6.28668 6.33590 6.47519 6.62293 6.67278 6.68313 6.89929 7.09901 7.11792 7.12199 7.20271 7.23044 7.68347 7.80953 8.01878 8.24016 8.44034 8.90414 9.06810 9.64586 11.14202 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.028123 B = 0.002814 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.393813 B = 9947.223225 C =10123.946801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.621 5.621 3 C 0.702 3.298 4 O -0.594 6.594 5 N -0.737 5.737 6 C 0.146 3.854 7 C -0.072 4.072 8 C -0.125 4.125 9 C -0.125 4.125 10 C 0.036 3.964 11 C -0.509 4.509 12 H 0.060 0.940 13 C 0.055 3.945 14 N -0.894 5.894 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.182 3.818 20 H 0.077 0.923 21 C -0.136 4.136 22 C -0.117 4.117 23 C -0.114 4.114 24 C -0.183 4.183 25 C 0.100 3.900 26 H 0.069 0.931 27 O -0.555 6.555 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.394 0.606 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.027 0.973 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.259 0.741 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.063 0.937 50 H 0.101 0.899 51 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.153 -25.914 2.457 26.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.359 5.359 3 C 0.403 3.597 4 O -0.473 6.473 5 N -0.393 5.393 6 C 0.023 3.977 7 C -0.073 4.073 8 C -0.183 4.183 9 C -0.182 4.182 10 C -0.001 4.001 11 C -0.548 4.548 12 H 0.078 0.922 13 C -0.146 4.146 14 N -0.534 5.534 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.212 1.212 19 C 0.077 3.923 20 H 0.095 0.905 21 C -0.175 4.175 22 C -0.155 4.155 23 C -0.152 4.152 24 C -0.220 4.220 25 C 0.041 3.959 26 H 0.087 0.913 27 O -0.361 6.361 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.134 0.866 31 H 0.230 0.770 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.069 0.931 43 H 0.113 0.887 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.119 0.881 51 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.759 -25.222 2.353 25.978 hybrid contribution -1.406 0.397 0.142 1.468 sum -7.166 -24.825 2.496 25.959 Atomic orbital electron populations 1.22578 0.80647 1.05662 1.00241 1.46823 1.05983 1.04178 1.78927 1.15925 0.85340 0.80329 0.78062 1.90863 1.11631 1.86323 1.58439 1.45491 1.09899 1.04906 1.78976 1.21462 0.94314 0.80374 1.01555 1.20908 0.95364 0.96018 0.94993 1.21746 0.99591 0.99566 0.97367 1.21739 0.99588 0.99563 0.97342 1.19087 0.94993 0.88536 0.97502 1.21229 0.92988 0.90532 1.50025 0.92221 1.25019 0.94961 0.98951 0.95621 1.69984 1.12439 1.19942 1.51025 0.86598 0.81496 0.82751 0.77503 1.19815 1.21160 1.21158 1.20737 0.91863 0.80910 0.98754 0.90499 1.21985 0.98622 1.03559 0.93315 1.21479 0.97503 0.98680 0.97835 1.21467 0.97779 0.98846 0.97104 1.22982 0.99123 1.04831 0.95071 1.22029 0.91680 0.97846 0.84367 0.91273 1.86588 1.52762 1.53412 1.43322 0.93437 0.92585 0.86580 0.77026 0.92141 0.92139 0.95425 0.91520 0.93369 0.93410 0.91521 0.95419 0.96335 0.96321 0.93126 0.88682 0.91396 0.91734 0.91946 0.92169 0.91816 0.91786 0.88098 0.77551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.50 7.72 59.85 0.46 0.96 16 2 N -0.62 -7.85 2.24 -179.67 -0.40 -8.25 16 3 C 0.70 11.63 7.99 -86.92 -0.69 10.93 16 4 O -0.59 -11.93 14.53 5.29 0.08 -11.85 16 5 N -0.74 -11.74 4.82 -65.23 -0.31 -12.05 16 6 C 0.15 2.75 4.56 -4.04 -0.02 2.73 16 7 C -0.07 -1.42 0.54 -154.51 -0.08 -1.50 16 8 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 9 C -0.13 -2.25 8.05 37.15 0.30 -1.95 16 10 C 0.04 0.91 4.04 -27.88 -0.11 0.79 16 11 C -0.51 -13.67 7.65 -34.44 -0.26 -13.93 16 12 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 13 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 14 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 15 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 C 0.18 2.04 2.60 -67.93 -0.18 1.86 16 20 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 21 C -0.14 -1.48 5.26 -26.74 -0.14 -1.62 16 22 C -0.12 -1.13 5.77 -26.73 -0.15 -1.28 16 23 C -0.11 -0.81 5.92 -26.73 -0.16 -0.97 16 24 C -0.18 -1.17 4.97 -26.73 -0.13 -1.31 16 25 C 0.10 0.75 3.04 -26.73 -0.08 0.67 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 O -0.55 -4.08 10.61 -35.23 -0.37 -4.46 16 28 H 0.05 0.42 6.80 -51.93 -0.35 0.06 16 29 H 0.06 0.56 6.69 -51.93 -0.35 0.21 16 30 H 0.12 0.96 3.55 -49.97 -0.18 0.78 16 31 H 0.39 5.48 4.03 -40.82 -0.16 5.32 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 35 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 39 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.09 1.36 6.25 -51.93 -0.32 1.03 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.74 7.60 -51.92 -0.39 0.35 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 48 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.10 0.73 3.55 -51.93 -0.18 0.54 16 51 H 0.38 1.08 9.08 47.66 0.43 1.52 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -32.57 372.33 -8.58 -41.16 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.84 Total: 4.58 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.05 Total: -5.14 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.02 Total: -46.24 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.30 Total: -16.31 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.57 -8.58 -41.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358682438.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.573 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds