Wall clock time and date at job start Fri Apr 10 2020 22:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46506 * 119.99726 * 2 1 4 4 C 1.53001 * 109.47158 * 270.00145 * 3 2 1 5 5 H 1.09003 * 110.43603 * 52.46031 * 4 3 2 6 6 C 1.54271 * 110.59881 * 289.84118 * 4 3 2 7 7 C 1.53871 * 106.59748 * 217.65890 * 6 4 3 8 8 C 1.54269 * 106.59813 * 359.97438 * 7 6 4 9 9 C 1.54885 * 104.19677 * 23.61322 * 8 7 6 10 10 H 1.09002 * 110.75709 * 80.37016 * 9 8 7 11 11 O 1.42901 * 110.91237 * 203.66987 * 9 8 7 12 12 C 1.34778 * 120.00645 * 180.02562 * 2 1 3 13 13 O 1.21576 * 120.00244 * 179.97438 * 12 2 1 14 14 N 1.34778 * 119.99617 * 359.97438 * 12 2 1 15 15 C 1.46499 * 120.00312 * 180.02562 * 14 12 2 16 16 C 1.52996 * 109.47587 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47079 * 300.00468 * 16 15 14 18 18 C 1.53002 * 109.46912 * 59.99910 * 16 15 14 19 19 C 1.52995 * 109.47466 * 179.97438 * 16 15 14 20 20 C 1.50694 * 109.47295 * 180.02562 * 19 16 15 21 21 H 1.07998 * 120.00400 * 359.97438 * 20 19 16 22 22 C 1.37882 * 119.99977 * 180.02562 * 20 19 16 23 23 N 1.31511 * 120.00156 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00097 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47200 * 89.99548 * 24 22 20 26 26 H 1.48495 * 109.47217 * 210.00232 * 24 22 20 27 27 H 1.48503 * 109.47001 * 329.99741 * 24 22 20 28 28 H 1.09007 * 109.47365 * 89.99990 * 1 2 3 29 29 H 1.09007 * 109.47183 * 209.99716 * 1 2 3 30 30 H 1.08995 * 109.47538 * 329.99850 * 1 2 3 31 31 H 1.08998 * 109.46756 * 150.00426 * 3 2 1 32 32 H 1.09000 * 109.47079 * 29.99944 * 3 2 1 33 33 H 1.09001 * 110.03111 * 336.94296 * 6 4 3 34 34 H 1.08995 * 110.03240 * 98.32438 * 6 4 3 35 35 H 1.09000 * 110.03307 * 119.28518 * 7 6 4 36 36 H 1.08999 * 110.03179 * 240.66906 * 7 6 4 37 37 H 1.09002 * 110.48538 * 264.93327 * 8 7 6 38 38 H 1.08996 * 110.48433 * 142.29362 * 8 7 6 39 39 H 0.96696 * 113.99930 * 295.94730 * 11 9 8 40 40 H 0.97002 * 119.99833 * 0.02562 * 14 12 2 41 41 H 1.09007 * 109.46763 * 300.00237 * 15 14 12 42 42 H 1.08998 * 109.46782 * 59.99487 * 15 14 12 43 43 H 1.08998 * 109.47818 * 59.99652 * 17 16 15 44 44 H 1.09004 * 109.47455 * 180.02562 * 17 16 15 45 45 H 1.09000 * 109.46710 * 299.99473 * 17 16 15 46 46 H 1.08997 * 109.47216 * 59.99754 * 18 16 15 47 47 H 1.09001 * 109.47146 * 180.02562 * 18 16 15 48 48 H 1.09005 * 109.47023 * 300.00165 * 18 16 15 49 49 H 1.09007 * 109.46859 * 300.00295 * 19 16 15 50 50 H 1.09000 * 109.47169 * 60.00009 * 19 16 15 51 51 H 0.96997 * 120.00649 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 1.5210 1.7172 -2.0088 6 6 3.4882 0.7879 -2.1176 7 6 4.3608 1.6866 -3.0113 8 6 3.8244 3.1238 -2.8485 9 6 3.1138 3.1105 -1.4724 10 1 3.8369 3.2130 -0.6632 11 8 2.1251 4.1396 -1.3988 12 6 2.1390 -1.1671 -0.0005 13 8 3.3547 -1.1671 -0.0010 14 7 1.4651 -2.3344 -0.0005 15 6 2.1976 -3.6031 -0.0005 16 6 1.2035 -4.7661 0.0001 17 6 0.3243 -4.6847 1.2496 18 6 0.3234 -4.6853 -1.2488 19 6 1.9685 -6.0910 -0.0005 20 6 0.9893 -7.2365 -0.0005 21 1 -0.0726 -7.0392 0.0003 22 6 1.4489 -8.5364 -0.0005 23 7 2.7419 -8.7767 -0.0010 24 14 0.2351 -9.9563 0.0002 25 1 -0.0872 -10.3327 -1.3997 26 1 0.8354 -11.1203 0.7002 27 1 -1.0079 -9.5446 0.7008 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 3.1498 1.1384 0.5138 32 1 1.6083 2.0284 0.5138 33 1 4.1046 0.3022 -1.3612 34 1 2.9807 0.0374 -2.7237 35 1 5.4007 1.6369 -2.6886 36 1 4.2775 1.3722 -4.0516 37 1 3.1148 3.3583 -3.6420 38 1 4.6462 3.8397 -2.8466 39 1 2.4852 5.0355 -1.4526 40 1 0.4951 -2.3344 -0.0005 41 1 2.8243 -3.6608 -0.8906 42 1 2.8243 -3.6607 0.8894 43 1 -0.2208 -3.7408 1.2497 44 1 -0.3837 -5.5135 1.2504 45 1 0.9513 -4.7423 2.1394 46 1 0.9497 -4.7431 -2.1390 47 1 -0.3852 -5.5136 -1.2482 48 1 -0.2217 -3.7413 -1.2488 49 1 2.5945 -6.1486 -0.8910 50 1 2.5958 -6.1488 0.8890 51 1 3.0653 -9.6911 -0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358684829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:46:25 Heat of formation + Delta-G solvation = -123.248983 kcal Electronic energy + Delta-G solvation = -27274.551225 eV Core-core repulsion = 23593.152822 eV Total energy + Delta-G solvation = -3681.398403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.45071 -39.79622 -38.71065 -36.61256 -35.90220 -35.18142 -33.89233 -31.27514 -29.08226 -28.54966 -27.96262 -27.82746 -27.48271 -25.59167 -24.36689 -21.67557 -21.32496 -20.58948 -20.03090 -18.83725 -18.34979 -18.26235 -17.32536 -17.11093 -16.49375 -16.01700 -15.95576 -15.41430 -15.34274 -15.21258 -14.72224 -14.57823 -14.37049 -14.23684 -14.02006 -13.93774 -13.72159 -13.54662 -13.17221 -13.04510 -12.86630 -12.71458 -12.63341 -12.55449 -12.33582 -12.21884 -12.13357 -11.96102 -11.72522 -11.55395 -11.52833 -11.43275 -11.10391 -10.93839 -10.84708 -10.79707 -10.50518 -10.10154 -9.45535 -8.13026 -6.20835 1.43095 1.43601 1.53899 1.69823 2.19042 2.44914 3.02711 3.21398 3.28631 3.61540 3.66142 3.95759 3.99075 4.10140 4.22046 4.22528 4.26961 4.33945 4.45034 4.50467 4.58382 4.63231 4.69342 4.70909 4.74306 4.78810 4.84145 4.89479 4.91655 4.96827 5.01690 5.11400 5.12432 5.16407 5.25204 5.33028 5.39240 5.44646 5.50376 5.51919 5.55232 5.60007 5.63101 5.81214 5.90763 5.96708 6.31764 6.93832 6.94477 7.02162 7.46784 7.62186 8.99613 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.028785 B = 0.002547 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.510623 B =10992.038797 C =11441.662395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.630 5.630 3 C 0.143 3.857 4 C -0.093 4.093 5 H 0.076 0.924 6 C -0.120 4.120 7 C -0.123 4.123 8 C -0.147 4.147 9 C 0.109 3.891 10 H 0.073 0.927 11 O -0.575 6.575 12 C 0.696 3.304 13 O -0.627 6.627 14 N -0.727 5.727 15 C 0.163 3.837 16 C -0.063 4.063 17 C -0.120 4.120 18 C -0.119 4.119 19 C 0.040 3.960 20 C -0.512 4.512 21 H 0.073 0.927 22 C -0.006 4.006 23 N -0.939 5.939 24 Si 0.959 3.041 25 H -0.276 1.276 26 H -0.290 1.290 27 H -0.259 1.259 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.396 0.604 40 H 0.407 0.593 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.057 0.943 48 H 0.066 0.934 49 H -0.015 1.015 50 H -0.014 1.014 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.497 27.470 -2.524 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.366 5.366 3 C 0.020 3.980 4 C -0.113 4.113 5 H 0.094 0.906 6 C -0.158 4.158 7 C -0.161 4.161 8 C -0.184 4.184 9 C 0.050 3.950 10 H 0.091 0.909 11 O -0.383 6.383 12 C 0.398 3.602 13 O -0.508 6.508 14 N -0.385 5.385 15 C 0.038 3.962 16 C -0.064 4.064 17 C -0.177 4.177 18 C -0.177 4.177 19 C 0.002 3.998 20 C -0.550 4.550 21 H 0.091 0.909 22 C -0.203 4.203 23 N -0.580 5.580 24 Si 0.784 3.216 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.183 1.183 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.246 0.754 40 H 0.246 0.754 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.004 0.996 50 H 0.004 0.996 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.934 26.818 -2.460 27.379 hybrid contribution 0.145 -1.056 -0.198 1.084 sum -4.789 25.762 -2.658 26.338 Atomic orbital electron populations 1.21973 0.77731 1.04463 1.02779 1.47055 1.07634 1.04114 1.77845 1.21450 0.97312 0.83328 0.95907 1.22276 0.98845 0.93472 0.96684 0.90586 1.22181 0.97417 0.97301 0.98891 1.22050 0.99401 0.94982 0.99675 1.22974 1.00734 0.96827 0.97897 1.22687 0.89205 0.86668 0.96449 0.90874 1.86449 1.36356 1.18789 1.96711 1.16108 0.85070 0.81245 0.77815 1.90834 1.13438 1.86807 1.59730 1.45205 1.10297 1.03876 1.79115 1.21020 0.93852 0.81574 0.99769 1.20700 0.95384 0.93241 0.97065 1.21674 0.99003 1.01313 0.95696 1.21672 0.98990 1.01299 0.95705 1.18966 0.94618 0.91810 0.94359 1.21583 0.93789 0.90967 1.48673 0.90874 1.25960 0.96659 1.02154 0.95508 1.70122 1.14716 1.20571 1.52620 0.85534 0.79306 0.78523 0.78212 1.20182 1.21615 1.18276 0.91913 0.90769 0.88493 0.91610 0.88161 0.91614 0.94342 0.91578 0.91839 0.90849 0.89579 0.75408 0.75424 0.94125 0.93996 0.91440 0.92457 0.94450 0.94587 0.92415 0.91507 0.99634 0.99551 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 10.25 127.77 1.31 2.36 16 2 N -0.63 -14.18 2.85 -864.91 -2.46 -16.64 16 3 C 0.14 2.91 5.00 86.38 0.43 3.34 16 4 C -0.09 -1.83 2.81 -9.73 -0.03 -1.86 16 5 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 6 C -0.12 -2.92 5.44 31.32 0.17 -2.75 16 7 C -0.12 -2.32 6.80 31.32 0.21 -2.10 16 8 C -0.15 -2.04 6.56 31.67 0.21 -1.83 16 9 C 0.11 1.63 3.69 31.88 0.12 1.75 16 10 H 0.07 1.01 8.06 -2.39 -0.02 0.99 16 11 O -0.57 -7.63 13.45 -148.98 -2.00 -9.64 16 12 C 0.70 21.57 7.80 179.05 1.40 22.96 16 13 O -0.63 -24.44 13.49 -3.96 -0.05 -24.49 16 14 N -0.73 -21.37 4.82 -478.55 -2.31 -23.68 16 15 C 0.16 6.05 4.56 86.38 0.39 6.44 16 16 C -0.06 -2.43 0.54 -52.18 -0.03 -2.46 16 17 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 18 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 19 C 0.04 2.06 4.04 29.84 0.12 2.18 16 20 C -0.51 -27.53 7.65 25.60 0.20 -27.33 16 21 H 0.07 3.66 5.68 -2.91 -0.02 3.65 16 22 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 23 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 24 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 28 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.07 0.97 6.36 -2.38 -0.02 0.95 16 30 H 0.10 0.97 7.89 -2.39 -0.02 0.95 16 31 H 0.07 1.60 7.24 -2.39 -0.02 1.58 16 32 H 0.10 1.57 7.89 -2.39 -0.02 1.55 16 33 H 0.07 2.00 5.62 -2.39 -0.01 1.99 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.40 1.79 9.12 -74.06 -0.68 1.12 16 40 H 0.41 9.52 3.89 -92.71 -0.36 9.16 16 41 H 0.04 1.66 8.14 -2.38 -0.02 1.65 16 42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.07 1.73 6.86 -2.39 -0.02 1.72 16 44 H 0.06 2.06 6.62 -2.38 -0.02 2.05 16 45 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.06 2.08 6.62 -2.39 -0.02 2.07 16 48 H 0.07 1.74 6.86 -2.38 -0.02 1.73 16 49 H -0.01 -0.85 8.14 -2.38 -0.02 -0.86 16 50 H -0.01 -0.80 8.14 -2.39 -0.02 -0.81 16 51 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -72.33 388.32 1.48 -70.85 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -0.12 Total: 21.23 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 6.12 Total: -6.14 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -4.49 Total: -97.53 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -2.06 Total: -34.13 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -72.33 1.48 -70.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358684829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.402 kcal (2) G-P(sol) polarization free energy of solvation -72.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds