Wall clock time and date at job start Fri Apr 10 2020 22:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00198 * 2 1 4 4 C 1.53004 * 109.46750 * 269.99937 * 3 2 1 5 5 H 1.09000 * 109.49063 * 59.97334 * 4 3 2 6 6 C 1.53095 * 109.47412 * 179.97438 * 4 3 2 7 7 C 1.53181 * 109.15940 * 177.59363 * 6 4 3 8 8 C 1.53176 * 109.03560 * 303.01673 * 7 6 4 9 9 C 1.53095 * 109.16286 * 56.98068 * 8 7 6 10 10 O 1.42895 * 109.48076 * 299.93829 * 4 3 2 11 11 C 1.34778 * 119.99950 * 179.97438 * 2 1 3 12 12 O 1.21587 * 119.99847 * 179.97438 * 11 2 1 13 13 N 1.34776 * 119.99897 * 0.02562 * 11 2 1 14 14 C 1.46498 * 119.99736 * 179.97438 * 13 11 2 15 15 C 1.53000 * 109.47166 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47191 * 300.00142 * 15 14 13 17 17 C 1.52995 * 109.46983 * 59.99953 * 15 14 13 18 18 C 1.53003 * 109.47257 * 179.97438 * 15 14 13 19 19 C 1.50693 * 109.46856 * 179.97438 * 18 15 14 20 20 H 1.08003 * 120.00323 * 0.02562 * 19 18 15 21 21 C 1.37882 * 120.00002 * 179.97438 * 19 18 15 22 22 N 1.31514 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00199 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47271 * 60.00327 * 23 21 19 25 25 H 1.48504 * 109.46927 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47214 * 299.99968 * 23 21 19 27 27 H 1.09004 * 109.46658 * 90.00151 * 1 2 3 28 28 H 1.09002 * 109.47240 * 210.00177 * 1 2 3 29 29 H 1.08999 * 109.47394 * 330.00244 * 1 2 3 30 30 H 1.09000 * 109.47392 * 149.99690 * 3 2 1 31 31 H 1.09004 * 109.46924 * 29.99579 * 3 2 1 32 32 H 1.08994 * 109.52897 * 57.68882 * 6 4 3 33 33 H 1.09005 * 109.57452 * 297.52144 * 6 4 3 34 34 H 1.08996 * 109.54405 * 183.15389 * 7 6 4 35 35 H 1.08999 * 109.61813 * 62.92653 * 7 6 4 36 36 H 1.09001 * 109.52789 * 176.89009 * 8 7 6 37 37 H 1.09007 * 109.52321 * 297.07724 * 8 7 6 38 38 H 1.08995 * 109.48092 * 62.37615 * 9 8 7 39 39 H 1.09004 * 109.48253 * 182.40879 * 9 8 7 40 40 H 0.96995 * 120.00096 * 359.97438 * 13 11 2 41 41 H 1.09003 * 109.47366 * 300.00312 * 14 13 11 42 42 H 1.08998 * 109.47145 * 59.99811 * 14 13 11 43 43 H 1.09003 * 109.47392 * 59.99558 * 16 15 14 44 44 H 1.08998 * 109.47195 * 180.02562 * 16 15 14 45 45 H 1.09008 * 109.46953 * 299.99848 * 16 15 14 46 46 H 1.09002 * 109.47378 * 60.00402 * 17 15 14 47 47 H 1.08999 * 109.47485 * 179.97438 * 17 15 14 48 48 H 1.09007 * 109.47318 * 300.00088 * 17 15 14 49 49 H 1.09001 * 109.46645 * 300.00163 * 18 15 14 50 50 H 1.08998 * 109.47094 * 59.99890 * 18 15 14 51 51 H 0.97006 * 119.99765 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 1.5003 1.8403 -1.9568 6 6 3.2175 3.0365 -1.4427 7 6 3.5214 3.4413 -2.8885 8 6 4.3084 2.3162 -3.5675 9 6 3.5013 1.0178 -3.4851 10 8 3.2259 0.7152 -2.1159 11 6 2.1388 -1.1672 0.0005 12 8 3.3547 -1.1672 0.0001 13 7 1.4649 -2.3344 0.0005 14 6 2.1975 -3.6031 0.0005 15 6 1.2032 -4.7660 0.0012 16 6 0.3241 -4.6847 1.2507 17 6 0.3232 -4.6853 -1.2477 18 6 1.9683 -6.0911 0.0005 19 6 0.9890 -7.2364 0.0018 20 1 -0.0729 -7.0391 0.0025 21 6 1.4485 -8.5364 0.0010 22 7 2.7415 -8.7767 -0.0005 23 14 0.2346 -9.9562 0.0018 24 1 -0.6203 -9.8773 -1.2098 25 1 0.9772 -11.2423 0.0013 26 1 -0.6179 -9.8779 1.2152 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 3.1499 1.1384 0.5139 31 1 1.6084 2.0284 0.5138 32 1 4.1515 2.9184 -0.8936 33 1 2.6109 3.8080 -0.9684 34 1 4.1145 4.3558 -2.8940 35 1 2.5879 3.6088 -3.4256 36 1 4.4813 2.5719 -4.6128 37 1 5.2646 2.1834 -3.0611 38 1 2.5629 1.1382 -4.0262 39 1 4.0752 0.2043 -3.9289 40 1 0.4950 -2.3344 0.0005 41 1 2.8242 -3.6608 -0.8894 42 1 2.8241 -3.6608 0.8905 43 1 -0.2209 -3.7407 1.2508 44 1 -0.3839 -5.5135 1.2514 45 1 0.9511 -4.7423 2.1405 46 1 0.9495 -4.7432 -2.1380 47 1 -0.3848 -5.5140 -1.2476 48 1 -0.2219 -3.7412 -1.2477 49 1 2.5943 -6.1487 -0.8899 50 1 2.5956 -6.1489 0.8900 51 1 3.0648 -9.6913 -0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358701544.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:46:52 Heat of formation + Delta-G solvation = -114.033273 kcal Electronic energy + Delta-G solvation = -27446.173531 eV Core-core repulsion = 23765.174751 eV Total energy + Delta-G solvation = -3680.998780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.31378 -40.15257 -38.74042 -36.49327 -35.22867 -34.49405 -33.97515 -32.58555 -29.16588 -28.63294 -27.95477 -27.79625 -26.71690 -25.15947 -24.53318 -23.19715 -21.16464 -20.92275 -19.95905 -18.76161 -18.34137 -17.40050 -17.22014 -17.09065 -16.49602 -16.40264 -15.68950 -15.59357 -15.32369 -15.18428 -15.13671 -14.52267 -14.38068 -14.27604 -13.96143 -13.92987 -13.61314 -13.53062 -13.35020 -13.29057 -12.82041 -12.74142 -12.65647 -12.56218 -12.32127 -12.20686 -12.17733 -11.97894 -11.93260 -11.71069 -11.52004 -11.24735 -11.18832 -10.94272 -10.84029 -10.49303 -10.30978 -10.06274 -9.39927 -8.12141 -6.20388 1.43330 1.46019 1.53116 1.74807 2.31688 2.45664 2.91267 3.14070 3.21943 3.81815 3.92323 3.97160 3.99823 4.05809 4.10917 4.19317 4.23585 4.30491 4.33261 4.42902 4.52746 4.66567 4.69512 4.71865 4.74971 4.79488 4.81162 4.89086 4.92222 4.97651 4.98534 5.07761 5.12300 5.12885 5.13422 5.19598 5.40081 5.41619 5.50488 5.51373 5.55760 5.63381 5.64992 5.81908 5.91078 5.99615 6.32102 6.46876 6.94225 7.10664 7.47189 7.73115 9.00426 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.025752 B = 0.002664 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.013752 B =10508.039834 C =10982.347882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.629 5.629 3 C 0.138 3.862 4 C 0.069 3.931 5 H 0.066 0.934 6 C -0.145 4.145 7 C -0.117 4.117 8 C -0.153 4.153 9 C 0.054 3.946 10 O -0.393 6.393 11 C 0.698 3.302 12 O -0.626 6.626 13 N -0.728 5.728 14 C 0.164 3.836 15 C -0.063 4.063 16 C -0.119 4.119 17 C -0.118 4.118 18 C 0.040 3.960 19 C -0.513 4.513 20 H 0.074 0.926 21 C -0.007 4.007 22 N -0.940 5.940 23 Si 0.960 3.040 24 H -0.266 1.266 25 H -0.292 1.292 26 H -0.265 1.265 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.132 0.868 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.406 0.594 41 H 0.035 0.965 42 H 0.038 0.962 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.033 0.967 47 H 0.058 0.942 48 H 0.066 0.934 49 H -0.017 1.017 50 H -0.015 1.015 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.117 28.157 -3.594 29.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.366 5.366 3 C 0.015 3.985 4 C 0.010 3.990 5 H 0.084 0.916 6 C -0.183 4.183 7 C -0.155 4.155 8 C -0.191 4.191 9 C -0.023 4.023 10 O -0.312 6.312 11 C 0.400 3.600 12 O -0.506 6.506 13 N -0.386 5.386 14 C 0.039 3.961 15 C -0.063 4.063 16 C -0.176 4.176 17 C -0.175 4.175 18 C 0.003 3.997 19 C -0.551 4.551 20 H 0.092 0.908 21 C -0.203 4.203 22 N -0.581 5.581 23 Si 0.786 3.214 24 H -0.191 1.191 25 H -0.218 1.218 26 H -0.190 1.190 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.149 0.851 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.245 0.755 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.077 0.923 48 H 0.085 0.915 49 H 0.002 0.998 50 H 0.003 0.997 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.084 27.850 -3.489 28.948 hybrid contribution -0.056 -1.239 -0.280 1.272 sum -7.140 26.612 -3.769 27.809 Atomic orbital electron populations 1.22006 0.77517 1.04733 1.02719 1.46940 1.07545 1.03999 1.78084 1.21589 0.97682 0.84392 0.94866 1.22739 0.93943 0.88407 0.93924 0.91577 1.22138 1.01215 0.96859 0.98091 1.21566 1.00798 0.98004 0.95094 1.22161 0.99236 0.95515 1.02170 1.22618 0.98917 0.97666 0.83101 1.88186 1.73617 1.45408 1.23981 1.16091 0.84964 0.81345 0.77638 1.90881 1.13871 1.86791 1.59041 1.45147 1.10131 1.03808 1.79561 1.20974 0.93868 0.81843 0.99388 1.20699 0.95352 0.93118 0.97170 1.21669 0.98969 1.01384 0.95579 1.21660 0.98946 1.01307 0.95624 1.18961 0.94628 0.91891 0.94241 1.21555 0.93779 0.90941 1.48843 0.90774 1.25985 0.96699 1.02199 0.95452 1.70132 1.14804 1.20622 1.52536 0.85567 0.78801 0.77855 0.79216 1.19080 1.21768 1.19019 0.92063 0.91092 0.87670 0.92144 0.85069 0.92330 0.88120 0.90167 0.90796 0.89558 0.92580 0.92746 0.90585 0.75497 0.94675 0.94315 0.91356 0.92318 0.94514 0.94786 0.92304 0.91475 0.99815 0.99662 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 10.25 127.77 1.31 2.25 16 2 N -0.63 -14.42 2.83 -864.89 -2.45 -16.87 16 3 C 0.14 2.68 5.22 86.38 0.45 3.13 16 4 C 0.07 1.31 2.91 30.63 0.09 1.40 16 5 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.14 -2.03 5.42 30.69 0.17 -1.86 16 7 C -0.12 -1.48 6.03 30.71 0.19 -1.29 16 8 C -0.15 -2.55 6.14 30.69 0.19 -2.37 16 9 C 0.05 1.18 6.84 72.01 0.49 1.68 16 10 O -0.39 -11.18 9.03 -140.66 -1.27 -12.45 16 11 C 0.70 23.46 7.79 179.05 1.39 24.86 16 12 O -0.63 -27.43 15.14 4.33 0.07 -27.36 16 13 N -0.73 -22.83 4.82 -478.54 -2.31 -25.14 16 14 C 0.16 6.48 4.56 86.38 0.39 6.87 16 15 C -0.06 -2.49 0.54 -52.18 -0.03 -2.52 16 16 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 17 C -0.12 -4.15 8.05 71.98 0.58 -3.57 16 18 C 0.04 2.13 4.04 29.85 0.12 2.25 16 19 C -0.51 -27.95 7.65 25.60 0.20 -27.75 16 20 H 0.07 3.74 5.68 -2.91 -0.02 3.72 16 21 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 22 N -0.94 -58.23 13.29 21.45 0.28 -57.94 16 23 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 28 H 0.07 0.89 6.36 -2.39 -0.02 0.88 16 29 H 0.10 0.69 7.89 -2.39 -0.02 0.67 16 30 H 0.06 1.57 7.42 -2.39 -0.02 1.55 16 31 H 0.13 1.31 7.89 -2.38 -0.02 1.29 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.41 10.00 3.89 -92.71 -0.36 9.64 16 41 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.07 1.79 6.86 -2.39 -0.02 1.77 16 44 H 0.06 2.13 6.62 -2.39 -0.02 2.12 16 45 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.06 2.16 6.62 -2.39 -0.02 2.14 16 48 H 0.07 1.81 6.86 -2.38 -0.02 1.80 16 49 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 50 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 51 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -77.97 389.59 3.46 -74.51 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.53 Total: 19.59 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 6.58 Total: -0.37 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -4.47 Total: -99.95 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -1.20 Total: -39.81 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -77.97 3.46 -74.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358701544.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.521 kcal (2) G-P(sol) polarization free energy of solvation -77.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds