Wall clock time and date at job start Fri Apr 10 2020 22:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46987 * 2 1 4 4 O 1.42901 * 109.46649 * 240.00335 * 2 1 3 5 5 C 1.52996 * 109.47356 * 120.00182 * 2 1 3 6 6 N 1.46495 * 109.47297 * 185.00176 * 5 2 1 7 7 C 1.34780 * 120.00511 * 89.99681 * 6 5 2 8 8 O 1.21585 * 119.99947 * 186.27223 * 7 6 5 9 9 N 1.34780 * 119.99399 * 6.27293 * 7 6 5 10 10 C 1.46496 * 119.99366 * 174.72123 * 9 7 6 11 11 C 1.52998 * 109.46832 * 180.27147 * 10 9 7 12 12 C 1.52995 * 109.47483 * 300.00251 * 11 10 9 13 13 C 1.53004 * 109.47196 * 60.00317 * 11 10 9 14 14 C 1.53009 * 109.47167 * 179.97438 * 11 10 9 15 15 C 1.50701 * 109.46877 * 180.02562 * 14 11 10 16 16 H 1.07998 * 120.00117 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99798 * 179.97438 * 15 14 11 18 18 N 1.31517 * 119.99827 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00123 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47414 * 90.00284 * 19 17 15 21 21 H 1.48506 * 109.47318 * 210.00182 * 19 17 15 22 22 H 1.48501 * 109.47532 * 330.00244 * 19 17 15 23 23 C 1.46504 * 119.99888 * 270.00100 * 6 5 2 24 24 C 1.52999 * 117.49884 * 196.45237 * 23 6 5 25 25 C 1.53001 * 117.49871 * 127.82696 * 23 6 5 26 26 H 1.09001 * 109.46783 * 299.99904 * 1 2 3 27 27 H 1.08995 * 109.47415 * 59.99522 * 1 2 3 28 28 H 1.08992 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46853 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47020 * 300.00126 * 3 2 1 31 31 H 1.08994 * 109.46797 * 59.99931 * 3 2 1 32 32 H 0.96695 * 113.99884 * 299.99654 * 4 2 1 33 33 H 1.08997 * 109.46990 * 64.99492 * 5 2 1 34 34 H 1.09000 * 109.47138 * 305.00125 * 5 2 1 35 35 H 0.96996 * 120.00031 * 354.99268 * 9 7 6 36 36 H 1.09002 * 109.47340 * 300.27316 * 10 9 7 37 37 H 1.09004 * 109.47232 * 60.27623 * 10 9 7 38 38 H 1.08999 * 109.47505 * 59.99890 * 12 11 10 39 39 H 1.09002 * 109.47229 * 180.02562 * 12 11 10 40 40 H 1.09004 * 109.47069 * 299.99824 * 12 11 10 41 41 H 1.09002 * 109.47127 * 59.99201 * 13 11 10 42 42 H 1.08994 * 109.47381 * 180.02562 * 13 11 10 43 43 H 1.09002 * 109.46418 * 300.00152 * 13 11 10 44 44 H 1.08995 * 109.46649 * 300.00199 * 14 11 10 45 45 H 1.09004 * 109.46948 * 60.00444 * 14 11 10 46 46 H 0.96998 * 120.00155 * 180.02562 * 18 17 15 47 47 H 1.09007 * 115.54898 * 342.15837 * 23 6 5 48 48 H 1.08992 * 117.50037 * 359.97438 * 24 23 6 49 49 H 1.09005 * 117.49339 * 145.02015 * 24 23 6 50 50 H 1.08999 * 117.49574 * 214.97597 * 25 23 6 51 51 H 1.08995 * 117.50151 * 359.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7213 1.2492 6 7 3.5001 -0.6178 1.3109 7 6 4.0759 0.4197 1.9500 8 8 5.2818 0.5681 1.9047 9 7 3.3148 1.2927 2.6393 10 6 3.9479 2.3522 3.4285 11 6 2.8680 3.1934 4.1120 12 6 1.9619 3.8204 3.0505 13 6 2.0331 2.3013 5.0328 14 6 3.5292 4.2996 4.9368 15 6 2.4656 5.1279 5.6104 16 1 1.4224 4.8889 5.4652 17 6 2.8243 6.1900 6.4130 18 7 4.0946 6.4807 6.5903 19 14 1.5060 7.2162 7.2486 20 1 1.1968 6.6359 8.5802 21 1 1.9948 8.6084 7.4169 22 1 0.2782 7.2203 6.4133 23 6 4.3344 -1.6423 0.6778 24 6 5.8071 -1.7065 1.0877 25 6 5.4196 -1.1696 -0.2917 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.7210 -1.5951 -1.2330 33 1 1.7517 -1.7715 1.2055 34 1 1.6055 -0.2618 2.1369 35 1 2.3480 1.2171 2.6160 36 1 4.5934 1.9055 4.1848 37 1 4.5427 2.9879 2.7725 38 1 1.4909 3.0321 2.4633 39 1 1.1929 4.4201 3.5374 40 1 2.5567 4.4560 2.3945 41 1 2.6787 1.8545 5.7890 42 1 1.2636 2.9005 5.5194 43 1 1.5622 1.5129 4.4455 44 1 4.1744 3.8526 5.6930 45 1 4.1243 4.9354 4.2811 46 1 4.3470 7.2277 7.1552 47 1 3.8329 -2.5835 0.4520 48 1 6.1553 -0.9864 1.8280 49 1 6.2747 -2.6902 1.1317 50 1 5.6324 -1.8001 -1.1551 51 1 5.5125 -0.0966 -0.4589 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358702874.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:47:00 Heat of formation + Delta-G solvation = -50.969203 kcal Electronic energy + Delta-G solvation = -28438.380803 eV Core-core repulsion = 24760.116687 eV Total energy + Delta-G solvation = -3678.264117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.82080 -38.33271 -37.68363 -36.08121 -34.58768 -33.06380 -32.11496 -31.72074 -27.69732 -27.16004 -26.60731 -26.52553 -25.93421 -23.34480 -22.21308 -22.09858 -20.88637 -19.74618 -18.44651 -17.79624 -16.63353 -16.36505 -16.18414 -15.80968 -15.27393 -15.10520 -14.58795 -14.51245 -14.22611 -13.83879 -13.51536 -13.17054 -13.06660 -12.88869 -12.75563 -12.59811 -12.34862 -12.09593 -12.06827 -11.97603 -11.89033 -11.54545 -11.29983 -11.07344 -11.00541 -10.86179 -10.85045 -10.64386 -10.41575 -10.39840 -10.25273 -10.21836 -9.88195 -9.54588 -9.19161 -8.93516 -8.69992 -8.36363 -8.19604 -6.00352 -4.01763 2.64824 3.25927 3.30125 3.37407 3.38775 3.89637 3.95380 4.12461 4.44476 4.46854 4.55111 4.69834 4.90778 4.94210 5.04503 5.16103 5.24830 5.33341 5.35169 5.47824 5.50670 5.57513 5.63095 5.66258 5.66960 5.78030 5.83946 5.87386 6.05657 6.14017 6.20224 6.24143 6.29050 6.40489 6.46919 6.57525 6.60760 6.73769 6.88129 6.98787 7.05365 7.06173 7.13933 7.42701 7.63968 7.76310 7.98164 8.10502 8.39881 8.79059 9.03027 9.61374 11.11086 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.019661 B = 0.003465 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.763994 B = 8079.962547 C = 9003.042353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.109 3.891 3 C -0.145 4.145 4 O -0.547 6.547 5 C 0.088 3.912 6 N -0.598 5.598 7 C 0.706 3.294 8 O -0.582 6.582 9 N -0.738 5.738 10 C 0.145 3.855 11 C -0.072 4.072 12 C -0.127 4.127 13 C -0.126 4.126 14 C 0.037 3.963 15 C -0.511 4.511 16 H 0.059 0.941 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.275 1.275 23 C 0.097 3.903 24 C -0.197 4.197 25 C -0.178 4.178 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.369 0.631 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.392 0.608 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.027 0.973 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.025 0.975 44 H 0.018 0.982 45 H 0.019 0.981 46 H 0.260 0.740 47 H 0.121 0.879 48 H 0.139 0.861 49 H 0.083 0.917 50 H 0.088 0.912 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.906 -17.974 -13.334 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.067 3.933 3 C -0.202 4.202 4 O -0.352 6.352 5 C -0.036 4.036 6 N -0.333 5.333 7 C 0.408 3.592 8 O -0.460 6.460 9 N -0.395 5.395 10 C 0.021 3.979 11 C -0.072 4.072 12 C -0.184 4.184 13 C -0.183 4.183 14 C -0.001 4.001 15 C -0.550 4.550 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.008 4.008 24 C -0.235 4.235 25 C -0.217 4.217 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.215 0.785 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.229 0.771 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.070 0.930 47 H 0.138 0.862 48 H 0.156 0.844 49 H 0.101 0.899 50 H 0.106 0.894 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.633 -17.125 -13.334 22.423 hybrid contribution -1.509 0.022 0.600 1.624 sum -7.142 -17.103 -12.733 22.487 Atomic orbital electron populations 1.22474 0.95206 1.02506 1.03513 1.21741 0.92468 0.93846 0.85226 1.21925 1.02725 0.92817 1.02751 1.86658 1.77088 1.28195 1.43260 1.22251 0.80991 1.01767 0.98625 1.46313 1.04943 1.24514 1.57481 1.15930 0.85316 0.79449 0.78500 1.90760 1.12518 1.75334 1.67431 1.45706 1.09470 1.32532 1.51805 1.21499 0.95607 0.87324 0.93429 1.20909 0.94579 0.96255 0.95493 1.21801 0.99908 0.99079 0.97608 1.21755 1.00198 0.97713 0.98639 1.19082 0.95668 0.91286 0.94028 1.21175 0.92920 1.12729 1.28139 0.92293 1.25008 0.95108 0.97546 0.96792 1.69965 1.15376 1.29199 1.38777 0.86660 0.82039 0.79743 0.79918 1.20798 1.21340 1.19962 1.21286 0.87140 0.91058 1.01342 1.23910 0.95945 1.03002 1.00615 1.23141 1.03377 1.02088 0.93064 0.91180 0.91303 0.92226 0.91420 0.91864 0.90662 0.78480 0.89916 0.89948 0.77092 0.92098 0.91875 0.95436 0.91427 0.93242 0.93308 0.91433 0.95615 0.96333 0.96285 0.93034 0.86186 0.84387 0.89875 0.89403 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 8.82 37.16 0.33 -0.86 16 2 C 0.11 0.95 1.18 -90.62 -0.11 0.84 16 3 C -0.15 -1.64 7.48 37.16 0.28 -1.36 16 4 O -0.55 -4.98 12.54 -35.23 -0.44 -5.42 16 5 C 0.09 0.76 4.71 -4.05 -0.02 0.74 16 6 N -0.60 -7.09 2.50 -171.80 -0.43 -7.52 16 7 C 0.71 10.86 6.15 -86.91 -0.53 10.33 16 8 O -0.58 -10.93 12.09 5.29 0.06 -10.87 16 9 N -0.74 -10.75 3.90 -65.22 -0.25 -11.00 16 10 C 0.14 2.55 4.57 -4.04 -0.02 2.53 16 11 C -0.07 -1.33 0.54 -154.50 -0.08 -1.42 16 12 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 13 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 14 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 15 C -0.51 -13.39 7.65 -34.44 -0.26 -13.66 16 16 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 19 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.10 1.07 6.22 -67.93 -0.42 0.65 16 24 C -0.20 -2.49 9.63 -26.73 -0.26 -2.75 16 25 C -0.18 -2.18 9.87 -26.73 -0.26 -2.44 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.96 6.29 -51.93 -0.33 0.63 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.83 4.99 -51.93 -0.26 0.57 16 32 H 0.37 1.90 9.04 45.56 0.41 2.31 16 33 H 0.08 0.51 8.03 -51.93 -0.42 0.09 16 34 H 0.08 0.69 6.20 -51.93 -0.32 0.37 16 35 H 0.39 4.92 2.64 -40.82 -0.11 4.81 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.03 0.38 5.13 -51.93 -0.27 0.11 16 39 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 43 H 0.02 0.35 6.86 -51.93 -0.36 0.00 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.12 0.97 8.09 -51.92 -0.42 0.55 16 48 H 0.14 2.23 5.23 -52.09 -0.27 1.96 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.10 1.46 7.58 -51.93 -0.39 1.06 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -31.46 382.60 -8.48 -39.94 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -7.92 Total: 7.50 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -0.98 Total: -8.86 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.05 Total: -44.05 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.38 Total: -16.29 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.46 -8.48 -39.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358702874.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.027 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds