Wall clock time and date at job start Fri Apr 10 2020 22:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46987 * 2 1 4 4 O 1.42901 * 109.46649 * 240.00335 * 2 1 3 5 5 C 1.52996 * 109.47356 * 120.00182 * 2 1 3 6 6 N 1.46495 * 109.47297 * 185.00176 * 5 2 1 7 7 C 1.34780 * 120.00511 * 89.99681 * 6 5 2 8 8 O 1.21585 * 119.99947 * 186.27223 * 7 6 5 9 9 N 1.34780 * 119.99399 * 6.27293 * 7 6 5 10 10 C 1.46496 * 119.99366 * 174.72123 * 9 7 6 11 11 C 1.52998 * 109.46832 * 180.27147 * 10 9 7 12 12 C 1.52995 * 109.47483 * 300.00251 * 11 10 9 13 13 C 1.53004 * 109.47196 * 60.00317 * 11 10 9 14 14 C 1.53009 * 109.47167 * 179.97438 * 11 10 9 15 15 C 1.50701 * 109.46877 * 180.02562 * 14 11 10 16 16 H 1.07998 * 120.00117 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99798 * 179.97438 * 15 14 11 18 18 N 1.31517 * 119.99827 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00123 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47414 * 90.00284 * 19 17 15 21 21 H 1.48506 * 109.47318 * 210.00182 * 19 17 15 22 22 H 1.48501 * 109.47532 * 330.00244 * 19 17 15 23 23 C 1.46504 * 119.99888 * 270.00100 * 6 5 2 24 24 C 1.52999 * 117.49884 * 196.45237 * 23 6 5 25 25 C 1.53001 * 117.49871 * 127.82696 * 23 6 5 26 26 H 1.09001 * 109.46783 * 299.99904 * 1 2 3 27 27 H 1.08995 * 109.47415 * 59.99522 * 1 2 3 28 28 H 1.08992 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46853 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47020 * 300.00126 * 3 2 1 31 31 H 1.08994 * 109.46797 * 59.99931 * 3 2 1 32 32 H 0.96695 * 113.99884 * 299.99654 * 4 2 1 33 33 H 1.08997 * 109.46990 * 64.99492 * 5 2 1 34 34 H 1.09000 * 109.47138 * 305.00125 * 5 2 1 35 35 H 0.96996 * 120.00031 * 354.99268 * 9 7 6 36 36 H 1.09002 * 109.47340 * 300.27316 * 10 9 7 37 37 H 1.09004 * 109.47232 * 60.27623 * 10 9 7 38 38 H 1.08999 * 109.47505 * 59.99890 * 12 11 10 39 39 H 1.09002 * 109.47229 * 180.02562 * 12 11 10 40 40 H 1.09004 * 109.47069 * 299.99824 * 12 11 10 41 41 H 1.09002 * 109.47127 * 59.99201 * 13 11 10 42 42 H 1.08994 * 109.47381 * 180.02562 * 13 11 10 43 43 H 1.09002 * 109.46418 * 300.00152 * 13 11 10 44 44 H 1.08995 * 109.46649 * 300.00199 * 14 11 10 45 45 H 1.09004 * 109.46948 * 60.00444 * 14 11 10 46 46 H 0.96998 * 120.00155 * 180.02562 * 18 17 15 47 47 H 1.09007 * 115.54898 * 342.15837 * 23 6 5 48 48 H 1.08992 * 117.50037 * 359.97438 * 24 23 6 49 49 H 1.09005 * 117.49339 * 145.02015 * 24 23 6 50 50 H 1.08999 * 117.49574 * 214.97597 * 25 23 6 51 51 H 1.08995 * 117.50151 * 359.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7213 1.2492 6 7 3.5001 -0.6178 1.3109 7 6 4.0759 0.4197 1.9500 8 8 5.2818 0.5681 1.9047 9 7 3.3148 1.2927 2.6393 10 6 3.9479 2.3522 3.4285 11 6 2.8680 3.1934 4.1120 12 6 1.9619 3.8204 3.0505 13 6 2.0331 2.3013 5.0328 14 6 3.5292 4.2996 4.9368 15 6 2.4656 5.1279 5.6104 16 1 1.4224 4.8889 5.4652 17 6 2.8243 6.1900 6.4130 18 7 4.0946 6.4807 6.5903 19 14 1.5060 7.2162 7.2486 20 1 1.1968 6.6359 8.5802 21 1 1.9948 8.6084 7.4169 22 1 0.2782 7.2203 6.4133 23 6 4.3344 -1.6423 0.6778 24 6 5.8071 -1.7065 1.0877 25 6 5.4196 -1.1696 -0.2917 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.7210 -1.5951 -1.2330 33 1 1.7517 -1.7715 1.2055 34 1 1.6055 -0.2618 2.1369 35 1 2.3480 1.2171 2.6160 36 1 4.5934 1.9055 4.1848 37 1 4.5427 2.9879 2.7725 38 1 1.4909 3.0321 2.4633 39 1 1.1929 4.4201 3.5374 40 1 2.5567 4.4560 2.3945 41 1 2.6787 1.8545 5.7890 42 1 1.2636 2.9005 5.5194 43 1 1.5622 1.5129 4.4455 44 1 4.1744 3.8526 5.6930 45 1 4.1243 4.9354 4.2811 46 1 4.3470 7.2277 7.1552 47 1 3.8329 -2.5835 0.4520 48 1 6.1553 -0.9864 1.8280 49 1 6.2747 -2.6902 1.1317 50 1 5.6324 -1.8001 -1.1551 51 1 5.5125 -0.0966 -0.4589 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358702874.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:46:59 Heat of formation + Delta-G solvation = -71.951341 kcal Electronic energy + Delta-G solvation = -28439.290657 eV Core-core repulsion = 24760.116687 eV Total energy + Delta-G solvation = -3679.173970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90114 -39.29295 -38.93111 -37.27404 -35.68470 -34.71517 -33.46519 -32.71135 -29.09364 -28.52366 -27.93858 -27.64109 -27.01993 -25.04601 -23.41132 -23.18633 -21.68350 -20.86536 -19.80494 -18.92628 -18.36267 -17.52530 -17.22338 -16.82981 -16.56059 -16.18132 -15.88803 -15.69034 -15.40734 -15.06449 -14.88722 -14.57000 -14.32027 -14.02969 -13.91747 -13.90380 -13.45000 -13.30900 -13.02774 -12.84152 -12.75698 -12.69201 -12.67578 -12.59077 -12.43971 -12.30643 -12.21750 -12.10900 -11.95349 -11.60314 -11.52541 -11.21584 -11.04997 -10.98920 -10.86737 -10.69572 -10.50332 -10.02529 -9.17403 -8.12788 -6.20780 1.43409 1.44022 1.54144 1.60691 2.07859 2.45066 2.86890 3.14216 3.21869 3.37741 3.78982 3.85140 3.96263 4.04832 4.07558 4.08968 4.13768 4.20578 4.23618 4.35100 4.57900 4.64293 4.68151 4.72101 4.77150 4.79159 4.86838 4.90321 4.95182 5.00021 5.05557 5.07675 5.11702 5.16282 5.27315 5.36633 5.39698 5.44896 5.50610 5.52227 5.55548 5.63097 5.81018 5.82964 5.90606 5.91938 6.31454 6.93566 6.96815 7.04771 7.47099 7.60845 8.99873 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.019661 B = 0.003465 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.763994 B = 8079.962547 C = 9003.042353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.116 3.884 3 C -0.146 4.146 4 O -0.566 6.566 5 C 0.080 3.920 6 N -0.592 5.592 7 C 0.699 3.301 8 O -0.623 6.623 9 N -0.725 5.725 10 C 0.161 3.839 11 C -0.063 4.063 12 C -0.120 4.120 13 C -0.120 4.120 14 C 0.041 3.959 15 C -0.512 4.512 16 H 0.075 0.925 17 C -0.005 4.005 18 N -0.939 5.939 19 Si 0.958 3.042 20 H -0.275 1.275 21 H -0.291 1.291 22 H -0.258 1.258 23 C 0.110 3.890 24 C -0.211 4.211 25 C -0.182 4.182 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.031 0.969 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.388 0.612 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.405 0.595 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.034 0.966 41 H 0.037 0.963 42 H 0.058 0.942 43 H 0.067 0.933 44 H -0.014 1.014 45 H -0.016 1.016 46 H 0.259 0.741 47 H 0.168 0.832 48 H 0.098 0.902 49 H 0.108 0.892 50 H 0.113 0.887 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.706 -20.752 -14.182 27.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.074 3.926 3 C -0.203 4.203 4 O -0.374 6.374 5 C -0.042 4.042 6 N -0.325 5.325 7 C 0.401 3.599 8 O -0.505 6.505 9 N -0.384 5.384 10 C 0.036 3.964 11 C -0.063 4.063 12 C -0.177 4.177 13 C -0.177 4.177 14 C 0.003 3.997 15 C -0.550 4.550 16 H 0.093 0.907 17 C -0.202 4.202 18 N -0.581 5.581 19 Si 0.784 3.216 20 H -0.201 1.201 21 H -0.218 1.218 22 H -0.182 1.182 23 C 0.005 3.995 24 C -0.248 4.248 25 C -0.221 4.221 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.238 0.762 33 H 0.141 0.859 34 H 0.108 0.892 35 H 0.244 0.756 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.004 0.996 45 H 0.002 0.998 46 H 0.068 0.932 47 H 0.185 0.815 48 H 0.116 0.884 49 H 0.126 0.874 50 H 0.131 0.869 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.501 -19.953 -14.209 26.273 hybrid contribution -0.243 0.857 0.784 1.186 sum -9.744 -19.096 -13.425 25.295 Atomic orbital electron populations 1.22415 0.92995 1.04227 1.03462 1.21611 0.93829 0.91898 0.85233 1.21906 1.00347 0.95470 1.02586 1.86628 1.77555 1.29895 1.43300 1.22612 0.78367 1.04458 0.98800 1.46389 1.06749 1.23218 1.56140 1.16163 0.84813 0.80197 0.78705 1.90772 1.14584 1.76405 1.68729 1.45337 1.09870 1.31713 1.51445 1.21036 0.95008 0.87620 0.92720 1.20698 0.94874 0.95032 0.95717 1.21722 0.99045 0.99918 0.97052 1.21682 0.99409 0.98182 0.98438 1.18957 0.94983 0.92440 0.93286 1.21590 0.93862 1.12348 1.27230 0.90724 1.25953 0.97182 0.99205 0.97863 1.70130 1.17799 1.30060 1.40076 0.85542 0.79554 0.77494 0.79030 1.20121 1.21753 1.18186 1.21718 0.86596 0.91937 0.99199 1.23762 0.98115 1.03165 0.99786 1.23048 1.05036 1.00118 0.93937 0.90577 0.92064 0.89645 0.94967 0.92293 0.90566 0.76207 0.85869 0.89229 0.75554 0.93961 0.94341 0.91479 0.92249 0.94658 0.94382 0.92261 0.91444 0.99612 0.99797 0.93225 0.81531 0.88403 0.87379 0.86891 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 8.82 71.98 0.63 -0.90 16 2 C 0.12 1.62 1.18 -10.79 -0.01 1.60 16 3 C -0.15 -3.11 7.48 71.98 0.54 -2.57 16 4 O -0.57 -8.38 12.54 -148.98 -1.87 -10.25 16 5 C 0.08 1.03 4.71 86.38 0.41 1.44 16 6 N -0.59 -12.79 2.50 -815.71 -2.04 -14.83 16 7 C 0.70 21.60 6.15 179.05 1.10 22.70 16 8 O -0.62 -24.83 12.09 -3.98 -0.05 -24.87 16 9 N -0.73 -20.82 3.90 -478.53 -1.87 -22.69 16 10 C 0.16 5.94 4.57 86.38 0.39 6.33 16 11 C -0.06 -2.36 0.54 -52.18 -0.03 -2.39 16 12 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 13 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 14 C 0.04 2.09 4.04 29.85 0.12 2.21 16 15 C -0.51 -27.23 7.65 25.60 0.20 -27.03 16 16 H 0.07 3.67 5.68 -2.91 -0.02 3.66 16 17 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 18 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 19 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 C 0.11 2.14 6.22 44.99 0.28 2.42 16 24 C -0.21 -5.21 9.63 30.60 0.29 -4.91 16 25 C -0.18 -4.36 9.87 30.60 0.30 -4.06 16 26 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.03 0.91 6.29 -2.39 -0.01 0.90 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.53 4.99 -2.39 -0.01 1.51 16 32 H 0.39 2.15 9.04 -74.06 -0.67 1.48 16 33 H 0.12 0.69 8.03 -2.39 -0.02 0.67 16 34 H 0.09 1.06 6.20 -2.39 -0.01 1.04 16 35 H 0.40 9.17 2.64 -92.71 -0.25 8.93 16 36 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.07 1.68 5.13 -2.39 -0.01 1.67 16 39 H 0.06 2.09 6.62 -2.39 -0.02 2.07 16 40 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 2.05 6.62 -2.39 -0.02 2.03 16 43 H 0.07 1.63 6.86 -2.39 -0.02 1.61 16 44 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 45 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 46 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 47 H 0.17 1.75 8.09 -2.38 -0.02 1.73 16 48 H 0.10 3.34 5.23 -4.84 -0.03 3.31 16 49 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 50 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 51 H 0.05 1.78 7.58 -2.39 -0.02 1.76 16 Total: -1.00 -74.99 382.60 2.34 -72.65 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.00 Total: 23.44 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 5.85 Total: -11.75 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -3.62 Total: -94.55 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -1.92 Total: -35.12 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -74.99 2.34 -72.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358702874.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.697 kcal (2) G-P(sol) polarization free energy of solvation -74.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds