Wall clock time and date at job start Fri Apr 10 2020 22:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47274 * 2 1 4 4 C 1.52999 * 109.47052 * 120.00019 * 2 1 3 5 5 H 1.08995 * 109.51353 * 59.89950 * 4 2 1 6 6 C 1.53297 * 109.51299 * 179.97438 * 4 2 1 7 7 N 1.47150 * 108.38817 * 172.22790 * 6 4 2 8 8 C 1.34770 * 120.98612 * 129.43823 * 7 6 4 9 9 O 1.21590 * 119.99725 * 4.98539 * 8 7 6 10 10 N 1.34775 * 119.99986 * 184.98070 * 8 7 6 11 11 C 1.46506 * 119.99596 * 174.91826 * 10 8 7 12 12 C 1.52999 * 109.46781 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47209 * 59.99762 * 12 11 10 14 14 C 1.53005 * 109.47181 * 299.99762 * 12 11 10 15 15 C 1.53007 * 109.47146 * 179.97438 * 12 11 10 16 16 C 1.50695 * 109.47037 * 179.97438 * 15 12 11 17 17 H 1.07999 * 120.00483 * 0.02562 * 16 15 12 18 18 C 1.37880 * 119.99791 * 180.02562 * 16 15 12 19 19 N 1.31512 * 119.99728 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00022 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47255 * 270.00042 * 20 18 16 22 22 H 1.48500 * 109.46943 * 29.99933 * 20 18 16 23 23 H 1.48502 * 109.47277 * 150.00300 * 20 18 16 24 24 C 1.47159 * 118.03144 * 309.71806 * 7 6 4 25 25 C 1.52877 * 108.60768 * 50.22425 * 24 7 6 26 26 O 1.42957 * 109.51148 * 299.74506 * 4 2 1 27 27 H 1.09002 * 109.47301 * 300.00273 * 1 2 3 28 28 H 1.09001 * 109.47154 * 59.99950 * 1 2 3 29 29 H 1.08998 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47035 * 240.00203 * 2 1 3 31 31 H 1.08995 * 109.46822 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47071 * 300.00101 * 3 2 1 33 33 H 1.09004 * 109.46923 * 60.00135 * 3 2 1 34 34 H 1.09003 * 109.68227 * 52.50459 * 6 4 2 35 35 H 1.09002 * 109.68288 * 291.95248 * 6 4 2 36 36 H 0.96996 * 120.00311 * 354.91317 * 10 8 7 37 37 H 1.08996 * 109.47072 * 60.00471 * 11 10 8 38 38 H 1.08993 * 109.47019 * 300.00090 * 11 10 8 39 39 H 1.09006 * 109.47184 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47428 * 299.99887 * 13 12 11 41 41 H 1.09006 * 109.46827 * 60.00379 * 13 12 11 42 42 H 1.09001 * 109.47220 * 300.00135 * 14 12 11 43 43 H 1.08998 * 109.47031 * 60.00373 * 14 12 11 44 44 H 1.09002 * 109.47014 * 179.97438 * 14 12 11 45 45 H 1.08996 * 109.46403 * 60.00022 * 15 12 11 46 46 H 1.08993 * 109.46888 * 300.00179 * 15 12 11 47 47 H 0.97002 * 119.99974 * 179.97438 * 19 18 16 48 48 H 1.08997 * 109.67707 * 170.00539 * 24 7 6 49 49 H 1.09002 * 109.67972 * 290.55788 * 24 7 6 50 50 H 1.09005 * 109.58265 * 187.92291 * 25 24 7 51 51 H 1.08999 * 109.41029 * 67.84029 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6756 -1.7485 1.2508 6 6 3.5729 -0.7224 1.2499 7 7 4.0362 -1.2508 2.5428 8 6 4.9508 -2.2389 2.6009 9 8 5.4727 -2.6450 1.5806 10 7 5.2869 -2.7769 3.7900 11 6 6.1962 -3.9244 3.8440 12 6 6.4107 -4.3368 5.3017 13 6 5.0677 -4.7206 5.9261 14 6 7.0188 -3.1673 6.0785 15 6 7.3599 -5.5356 5.3581 16 6 7.5717 -5.9414 6.7938 17 1 7.0784 -5.3990 7.5868 18 6 8.3954 -7.0053 7.0951 19 7 8.5798 -7.3598 8.3481 20 14 9.2492 -7.9431 5.7237 21 1 8.3823 -9.0621 5.2749 22 1 9.5057 -7.0274 4.5831 23 1 10.5385 -8.4853 6.2229 24 6 3.4666 -0.6726 3.7703 25 6 1.9428 -0.6702 3.6469 26 8 1.5688 -0.0446 2.4170 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.9409 0.2949 1.1160 35 1 3.9400 -1.3553 0.4419 36 1 4.9268 -2.4044 4.6101 37 1 7.1529 -3.6510 3.3989 38 1 5.7629 -4.7576 3.2910 39 1 5.2206 -5.0149 6.9644 40 1 4.3912 -3.8669 5.8859 41 1 4.6346 -5.5539 5.3726 42 1 7.9756 -2.8939 5.6337 43 1 6.3422 -2.3136 6.0383 44 1 7.1712 -3.4610 7.1171 45 1 8.3167 -5.2625 4.9131 46 1 6.9264 -6.3686 4.8048 47 1 9.1589 -8.1086 8.5601 48 1 3.7632 -1.2726 4.6306 49 1 3.8236 0.3498 3.8945 50 1 1.5095 -0.1196 4.4820 51 1 1.5768 -1.6969 3.6587 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358705673.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:47:09 Heat of formation + Delta-G solvation = -106.406101 kcal Electronic energy + Delta-G solvation = -27435.953536 eV Core-core repulsion = 23755.285495 eV Total energy + Delta-G solvation = -3680.668041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73779 -40.09215 -38.71939 -36.52379 -35.60439 -35.19901 -33.94868 -31.36744 -29.85838 -28.97846 -28.00211 -27.95699 -27.24482 -25.17275 -24.44269 -23.38825 -21.10367 -20.70855 -20.06584 -19.01735 -18.83956 -17.69571 -17.21370 -16.90465 -16.35593 -16.23728 -16.13886 -15.70029 -15.50374 -15.32729 -15.05159 -14.87546 -14.65934 -14.25661 -14.22666 -14.15518 -13.83200 -13.49999 -13.12606 -12.94698 -12.85767 -12.81359 -12.66313 -12.62307 -12.31375 -12.16536 -12.13028 -11.78180 -11.76371 -11.65492 -11.59601 -11.52900 -11.32151 -11.14577 -11.06230 -10.90801 -10.70480 -10.19952 -9.44976 -8.22452 -6.22301 1.35581 1.38735 1.48219 1.48875 2.04597 2.39000 2.73508 2.84481 3.13066 3.62200 3.82654 3.89222 3.93943 3.97134 4.04756 4.08543 4.15161 4.18983 4.25126 4.48606 4.55192 4.62148 4.67183 4.69652 4.70668 4.74554 4.82393 4.89010 4.93026 4.94073 5.00893 5.05984 5.08311 5.09322 5.21535 5.28415 5.33347 5.36029 5.40119 5.45192 5.47659 5.52852 5.55253 5.68552 5.75222 5.82947 6.15798 6.37886 6.84060 6.87563 7.40402 7.46283 8.92976 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.030894 B = 0.002626 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.109493 B =10658.729910 C =11022.268540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 C -0.143 4.143 4 C 0.089 3.911 5 H 0.052 0.948 6 C 0.099 3.901 7 N -0.633 5.633 8 C 0.702 3.298 9 O -0.634 6.634 10 N -0.725 5.725 11 C 0.157 3.843 12 C -0.057 4.057 13 C -0.122 4.122 14 C -0.123 4.123 15 C -0.004 4.004 16 C -0.500 4.500 17 H 0.054 0.946 18 C 0.006 3.994 19 N -0.950 5.950 20 Si 0.933 3.067 21 H -0.272 1.272 22 H -0.253 1.253 23 H -0.289 1.289 24 C 0.072 3.928 25 C 0.048 3.952 26 O -0.376 6.376 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.407 0.593 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.066 0.934 44 H 0.048 0.952 45 H 0.014 0.986 46 H 0.014 0.986 47 H 0.262 0.738 48 H 0.099 0.901 49 H 0.091 0.909 50 H 0.134 0.866 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.420 19.018 -13.828 29.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 C -0.201 4.201 4 C 0.030 3.970 5 H 0.070 0.930 6 C -0.024 4.024 7 N -0.371 5.371 8 C 0.404 3.596 9 O -0.516 6.516 10 N -0.384 5.384 11 C 0.033 3.967 12 C -0.057 4.057 13 C -0.179 4.179 14 C -0.180 4.180 15 C -0.042 4.042 16 C -0.538 4.538 17 H 0.072 0.928 18 C -0.190 4.190 19 N -0.592 5.592 20 Si 0.758 3.242 21 H -0.197 1.197 22 H -0.177 1.177 23 H -0.215 1.215 24 C -0.051 4.051 25 C -0.029 4.029 26 O -0.294 6.294 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.246 0.754 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.032 0.968 46 H 0.032 0.968 47 H 0.071 0.929 48 H 0.117 0.883 49 H 0.109 0.891 50 H 0.152 0.848 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.064 18.761 -14.448 29.187 hybrid contribution 0.933 -1.174 0.314 1.532 sum -16.130 17.587 -14.134 27.736 Atomic orbital electron populations 1.21719 0.93788 1.01761 1.02396 1.21164 0.97197 0.97253 0.94879 1.21815 1.00789 0.95039 1.02413 1.22480 0.91415 0.95900 0.87211 0.92955 1.22329 0.94994 1.00096 0.84992 1.47343 1.43237 1.37924 1.08557 1.16013 0.79987 0.79728 0.83921 1.90875 1.58698 1.66676 1.35338 1.45194 1.51321 1.34775 1.07074 1.21154 0.92273 0.86719 0.96594 1.20555 0.96680 0.96126 0.92369 1.21692 0.94921 1.00528 1.00795 1.21692 0.99849 0.96260 1.00190 1.19567 0.94950 0.94019 0.95641 1.21348 1.26407 1.13590 0.92472 0.92782 1.25815 0.97579 0.98462 0.97187 1.70034 1.40230 1.29467 1.19462 0.85919 0.78160 0.79526 0.80604 1.19724 1.17654 1.21503 1.22510 0.95500 1.00594 0.86500 1.23026 0.92808 0.99194 0.87910 1.87945 1.75760 1.52182 1.13539 0.92416 0.91529 0.93063 0.89230 0.92694 0.91645 0.92327 0.89718 0.89980 0.75352 0.93081 0.92912 0.93364 0.91491 0.93666 0.93792 0.91538 0.93329 0.96761 0.96814 0.92872 0.88329 0.89110 0.84806 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.05 71.98 0.65 -1.00 16 2 C -0.09 -1.12 2.81 -10.79 -0.03 -1.15 16 3 C -0.14 -1.71 8.71 71.98 0.63 -1.08 16 4 C 0.09 1.45 2.51 30.69 0.08 1.53 16 5 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 6 C 0.10 1.96 5.74 86.35 0.50 2.46 16 7 N -0.63 -13.80 3.03 -836.14 -2.53 -16.33 16 8 C 0.70 20.69 8.31 179.06 1.49 22.17 16 9 O -0.63 -24.25 15.85 -4.00 -0.06 -24.31 16 10 N -0.73 -19.36 4.87 -478.54 -2.33 -21.69 16 11 C 0.16 5.13 4.57 86.38 0.39 5.52 16 12 C -0.06 -1.99 0.54 -52.18 -0.03 -2.02 16 13 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 14 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 15 C 0.00 -0.17 3.11 29.85 0.09 -0.08 16 16 C -0.50 -26.90 8.20 25.60 0.21 -26.68 16 17 H 0.05 3.11 5.92 -2.91 -0.02 3.10 16 18 C 0.01 0.33 5.47 84.66 0.46 0.80 16 19 N -0.95 -58.29 13.96 21.45 0.30 -57.99 16 20 Si 0.93 44.40 27.47 68.60 1.88 46.28 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 C 0.07 1.01 6.60 86.21 0.57 1.58 16 25 C 0.05 0.59 6.97 71.94 0.50 1.10 16 26 O -0.38 -5.94 9.04 -148.98 -1.35 -7.29 16 27 H 0.06 0.77 7.69 -2.39 -0.02 0.75 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 0.67 6.28 -2.39 -0.01 0.66 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.78 7.68 -2.39 -0.02 0.76 16 34 H 0.08 1.52 6.09 -2.39 -0.01 1.51 16 35 H 0.08 1.94 7.12 -2.39 -0.02 1.93 16 36 H 0.41 8.57 3.68 -92.71 -0.34 8.23 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 39 H 0.05 1.81 6.62 -2.38 -0.02 1.80 16 40 H 0.07 1.63 6.86 -2.39 -0.02 1.62 16 41 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 1.66 6.86 -2.39 -0.02 1.65 16 44 H 0.05 1.84 6.62 -2.39 -0.02 1.83 16 45 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 46 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 47 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 48 H 0.10 1.16 5.66 -2.39 -0.01 1.15 16 49 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.13 0.96 8.14 -2.38 -0.02 0.94 16 51 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -70.01 381.52 3.09 -66.92 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.51 Total: 18.10 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 6.67 Total: -3.68 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -4.56 Total: -96.02 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -1.41 Total: -31.60 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.28 kcal Total: -70.01 3.09 -66.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358705673.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.490 kcal (2) G-P(sol) polarization free energy of solvation -70.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds