Wall clock time and date at job start Fri Apr 10 2020 22:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47388 * 2 1 4 4 C 1.52998 * 109.47055 * 240.00191 * 2 1 3 5 5 C 1.50700 * 109.47236 * 59.99977 * 4 2 1 6 6 H 1.07998 * 119.99814 * 0.02562 * 5 4 2 7 7 C 1.37883 * 120.00435 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99356 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00052 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47048 * 90.00542 * 9 7 5 11 11 H 1.48502 * 109.46737 * 210.00069 * 9 7 5 12 12 H 1.48497 * 109.47484 * 330.00058 * 9 7 5 13 13 C 1.53001 * 109.46932 * 120.00631 * 2 1 3 14 14 N 1.46500 * 109.46704 * 299.99680 * 13 2 1 15 15 C 1.34773 * 119.99691 * 180.02562 * 14 13 2 16 16 O 1.21593 * 120.00487 * 3.94055 * 15 14 13 17 17 N 1.34778 * 120.00000 * 183.94403 * 15 14 13 18 18 C 1.46493 * 119.99998 * 9.06780 * 17 15 14 19 19 C 1.53008 * 109.47372 * 270.00087 * 18 17 15 20 20 C 1.52991 * 109.47032 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47184 * 180.02562 * 20 19 18 22 22 O 1.42897 * 109.47473 * 179.97438 * 21 20 19 23 23 C 1.46509 * 119.99842 * 189.07094 * 17 15 14 24 24 C 1.53000 * 117.49850 * 15.89546 * 23 17 15 25 25 C 1.53001 * 117.49910 * 307.23296 * 23 17 15 26 26 H 1.08994 * 109.46566 * 299.99950 * 1 2 3 27 27 H 1.09000 * 109.47028 * 59.99774 * 1 2 3 28 28 H 1.08998 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47239 * 179.97438 * 3 2 1 30 30 H 1.08990 * 109.47685 * 300.00387 * 3 2 1 31 31 H 1.09007 * 109.47106 * 60.00145 * 3 2 1 32 32 H 1.08993 * 109.47436 * 180.02562 * 4 2 1 33 33 H 1.09006 * 109.47361 * 300.00239 * 4 2 1 34 34 H 0.97003 * 119.99211 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47040 * 179.97438 * 13 2 1 36 36 H 1.08993 * 109.47296 * 59.99612 * 13 2 1 37 37 H 0.96994 * 120.00230 * 359.97438 * 14 13 2 38 38 H 1.09000 * 109.47039 * 30.00375 * 18 17 15 39 39 H 1.09005 * 109.47049 * 150.00522 * 18 17 15 40 40 H 1.08995 * 109.46683 * 300.00509 * 19 18 17 41 41 H 1.08995 * 109.46632 * 60.00046 * 19 18 17 42 42 H 1.09008 * 109.47547 * 299.99638 * 20 19 18 43 43 H 1.08996 * 109.47470 * 59.99918 * 20 19 18 44 44 H 1.09000 * 109.47055 * 300.00042 * 21 20 19 45 45 H 1.09006 * 109.47174 * 59.99695 * 21 20 19 46 46 H 0.96705 * 113.99880 * 179.97438 * 22 21 20 47 47 H 1.09004 * 115.54359 * 161.56419 * 23 17 15 48 48 H 1.08999 * 117.49946 * 359.97438 * 24 23 17 49 49 H 1.08998 * 117.49559 * 145.02450 * 24 23 17 50 50 H 1.09000 * 117.49665 * 214.97876 * 25 23 17 51 51 H 1.08993 * 117.49748 * 359.97438 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4814 -3.7321 8 7 2.6273 -1.5508 -3.8527 9 14 1.2491 0.3996 -5.2572 10 1 2.2275 1.4413 -5.6607 11 1 1.0844 -0.5792 -6.3617 12 1 -0.0591 1.0372 -4.9616 13 6 2.0400 -0.7214 1.2492 14 7 1.5517 -0.0308 2.4454 15 6 1.8776 -0.4911 3.6694 16 8 2.6348 -1.4358 3.7820 17 7 1.3643 0.0958 4.7688 18 6 0.3044 1.0983 4.6366 19 6 0.9305 2.4877 4.5000 20 6 -0.1766 3.5347 4.3626 21 6 0.4495 4.9240 4.2253 22 8 -0.5844 5.9019 4.0964 23 6 1.8665 -0.2688 6.0959 24 6 3.1973 -1.0204 6.1657 25 6 1.8868 -1.7548 6.4598 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8898 31 1 1.6768 1.9563 0.8901 32 1 3.1300 -0.7216 -1.2491 33 1 1.6767 -1.7489 -1.2493 34 1 2.8622 -1.8817 -4.7338 35 1 3.1300 -0.7218 1.2490 36 1 1.6766 -1.7490 1.2491 37 1 0.9944 0.7581 2.3564 38 1 -0.2935 0.8805 3.7516 39 1 -0.3326 1.0723 5.5208 40 1 1.5283 2.7054 5.3850 41 1 1.5674 2.5137 3.6159 42 1 -0.7747 3.3172 3.4777 43 1 -0.8132 3.5085 5.2469 44 1 1.0480 5.1418 5.1099 45 1 1.0860 4.9499 3.3407 46 1 -0.2595 6.8081 4.0054 47 1 1.6472 0.4417 6.8930 48 1 3.6991 -1.2440 5.2243 49 1 3.8534 -0.8048 7.0090 50 1 1.6813 -2.0219 7.4964 51 1 1.5261 -2.4610 5.7121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358732689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:47:27 Heat of formation + Delta-G solvation = -66.318507 kcal Electronic energy + Delta-G solvation = -27330.253999 eV Core-core repulsion = 23651.324287 eV Total energy + Delta-G solvation = -3678.929712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.56588 -37.76937 -37.55307 -36.24380 -35.67114 -33.44504 -32.69027 -31.77218 -28.08126 -27.09621 -26.52156 -26.18172 -23.67172 -23.28476 -22.31192 -22.13588 -21.51383 -19.84740 -18.27535 -17.61554 -17.43534 -16.72930 -16.24743 -15.94138 -15.44348 -15.27753 -14.53703 -14.46261 -14.28655 -14.09615 -13.80049 -13.75362 -13.08645 -13.02454 -12.81440 -12.74690 -12.26431 -12.17611 -12.06313 -11.99190 -11.48303 -11.33969 -11.16562 -11.06613 -11.02948 -10.95152 -10.85177 -10.63850 -10.39869 -10.34685 -10.28351 -10.25090 -9.87544 -9.59902 -9.19293 -8.92762 -8.73658 -8.35775 -8.30770 -5.99855 -4.01110 2.62163 3.23666 3.30804 3.37961 3.39706 3.79041 3.90595 4.13967 4.45287 4.50889 4.66517 4.78045 4.85864 4.94036 4.96533 5.04713 5.15125 5.24400 5.31518 5.35393 5.35920 5.49397 5.56009 5.61282 5.64154 5.73952 5.74887 5.83811 5.96308 6.06360 6.17039 6.21880 6.26448 6.39873 6.40795 6.57675 6.62417 6.71631 6.85525 6.98653 7.06476 7.07165 7.14478 7.29134 7.64495 7.76725 7.98806 8.09775 8.40683 8.76730 9.03685 9.61997 11.11610 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.003608 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.005937 B = 7759.007992 C = 9908.003494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.125 4.125 4 C 0.037 3.963 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.145 3.855 14 N -0.736 5.736 15 C 0.703 3.297 16 O -0.583 6.583 17 N -0.608 5.608 18 C 0.115 3.885 19 C -0.140 4.140 20 C -0.119 4.119 21 C 0.075 3.925 22 O -0.576 6.576 23 C 0.087 3.913 24 C -0.191 4.191 25 C -0.187 4.187 26 H 0.026 0.974 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.394 0.606 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.048 0.952 46 H 0.380 0.620 47 H 0.125 0.875 48 H 0.137 0.863 49 H 0.085 0.915 50 H 0.090 0.910 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 10.229 21.019 23.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.022 3.978 14 N -0.392 5.392 15 C 0.405 3.595 16 O -0.462 6.462 17 N -0.343 5.343 18 C -0.009 4.009 19 C -0.179 4.179 20 C -0.157 4.157 21 C -0.003 4.003 22 O -0.382 6.382 23 C -0.018 4.018 24 C -0.228 4.228 25 C -0.226 4.226 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.230 0.770 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.227 0.773 47 H 0.142 0.858 48 H 0.155 0.845 49 H 0.103 0.897 50 H 0.108 0.892 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.078 8.861 20.972 23.130 hybrid contribution -0.180 1.333 -0.976 1.662 sum -4.258 10.194 19.996 22.845 Atomic orbital electron populations 1.21754 0.95342 1.01144 1.00089 1.20910 0.95419 0.95844 0.95085 1.21745 1.00527 0.95938 1.00052 1.19080 0.96362 0.95221 0.89400 1.21181 1.31197 1.12044 0.90520 0.92277 1.25011 0.95329 0.95060 0.99064 1.69971 1.36959 1.23001 1.23424 0.86656 0.79185 0.79420 0.83093 1.20791 1.21336 1.19938 1.21502 0.98779 0.95596 0.81967 1.45611 1.56074 1.32892 1.04588 1.16019 0.80793 0.82288 0.80420 1.90769 1.40277 1.29922 1.85211 1.46508 1.40092 1.43349 1.04306 1.21501 0.89290 0.86777 1.03316 1.22026 0.98408 0.94216 1.03282 1.21444 0.98348 0.92412 1.03480 1.22184 0.89623 0.88765 0.99705 1.86467 1.35500 1.19452 1.96756 1.21405 1.01451 0.94421 0.84485 1.23817 0.91087 1.02697 1.05211 1.23274 1.02376 0.95402 1.01570 0.95493 0.91419 0.93336 0.93359 0.91462 0.95487 0.96326 0.96326 0.93044 0.91918 0.92072 0.76981 0.90358 0.89880 0.91134 0.91137 0.90724 0.91041 0.93789 0.93362 0.77344 0.85788 0.84518 0.89679 0.89175 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 3 C -0.13 -2.19 8.05 37.15 0.30 -1.89 16 4 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 5 C -0.51 -13.50 7.65 -34.44 -0.26 -13.77 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 13 C 0.14 2.59 4.57 -4.04 -0.02 2.57 16 14 N -0.74 -10.91 4.74 -65.23 -0.31 -11.22 16 15 C 0.70 10.83 8.04 -86.92 -0.70 10.13 16 16 O -0.58 -10.88 12.10 5.28 0.06 -10.81 16 17 N -0.61 -7.13 2.84 -171.79 -0.49 -7.62 16 18 C 0.11 0.99 5.06 -4.04 -0.02 0.97 16 19 C -0.14 -1.09 5.42 -26.73 -0.14 -1.23 16 20 C -0.12 -0.89 5.58 -26.74 -0.15 -1.04 16 21 C 0.08 0.57 7.05 37.16 0.26 0.83 16 22 O -0.58 -4.92 13.66 -35.23 -0.48 -5.40 16 23 C 0.09 0.93 6.60 -67.92 -0.45 0.48 16 24 C -0.19 -2.30 9.62 -26.69 -0.26 -2.56 16 25 C -0.19 -2.14 9.88 -26.69 -0.26 -2.40 16 26 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 27 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 31 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.39 5.07 3.66 -40.82 -0.15 4.93 16 38 H 0.08 0.70 6.85 -51.93 -0.36 0.34 16 39 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.65 7.64 -51.93 -0.40 0.25 16 42 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.38 1.59 9.12 45.56 0.42 2.00 16 47 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.14 2.14 5.29 -51.96 -0.28 1.87 16 49 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.10 1.39 7.54 -51.93 -0.39 0.99 16 LS Contribution 396.20 15.07 5.97 5.97 Total: -1.00 -32.06 396.20 -9.55 -41.61 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -8.32 Total: 5.99 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.70 Total: -9.00 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.06 Total: -44.47 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.42 Total: -16.22 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.06 -9.55 -41.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358732689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.711 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds