Wall clock time and date at job start Fri Apr 10 2020 22:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00143 * 2 1 4 4 C 1.53005 * 109.47069 * 269.99907 * 3 2 1 5 5 H 1.09002 * 109.52314 * 304.99795 * 4 3 2 6 6 C 1.53181 * 109.52320 * 184.87214 * 4 3 2 7 7 C 1.53169 * 109.03929 * 183.05013 * 6 4 3 8 8 C 1.53101 * 109.16257 * 56.97887 * 7 6 4 9 9 O 1.42903 * 109.41341 * 302.39403 * 8 7 6 10 10 C 1.42900 * 114.09799 * 61.16062 * 9 8 7 11 11 C 1.34778 * 120.00130 * 180.02562 * 2 1 3 12 12 O 1.21582 * 120.00380 * 179.97438 * 11 2 1 13 13 N 1.34780 * 119.99909 * 0.02562 * 11 2 1 14 14 C 1.46500 * 119.99941 * 180.02562 * 13 11 2 15 15 C 1.53006 * 109.46870 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47284 * 299.99807 * 15 14 13 17 17 C 1.53002 * 109.47123 * 59.99809 * 15 14 13 18 18 C 1.52999 * 109.46791 * 179.97438 * 15 14 13 19 19 C 1.50703 * 109.46976 * 180.02562 * 18 15 14 20 20 H 1.08003 * 119.99533 * 359.97438 * 19 18 15 21 21 C 1.37876 * 120.00303 * 180.02562 * 19 18 15 22 22 N 1.31518 * 119.99554 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00223 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47054 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47091 * 119.99817 * 23 21 19 26 26 H 1.48495 * 109.46849 * 239.99925 * 23 21 19 27 27 H 1.09001 * 109.46689 * 90.00330 * 1 2 3 28 28 H 1.09002 * 109.47324 * 209.99775 * 1 2 3 29 29 H 1.09000 * 109.47292 * 330.00289 * 1 2 3 30 30 H 1.08998 * 109.47474 * 149.99815 * 3 2 1 31 31 H 1.09002 * 109.46971 * 29.99562 * 3 2 1 32 32 H 1.09003 * 109.54262 * 302.92309 * 6 4 3 33 33 H 1.09002 * 109.54034 * 63.09538 * 6 4 3 34 34 H 1.08995 * 109.52819 * 176.88447 * 7 6 4 35 35 H 1.09005 * 109.52456 * 297.01768 * 7 6 4 36 36 H 1.09000 * 109.47517 * 62.37679 * 8 7 6 37 37 H 1.08996 * 109.47896 * 182.40660 * 8 7 6 38 38 H 1.09000 * 109.48323 * 178.85848 * 10 9 8 39 39 H 1.08998 * 109.48675 * 58.81697 * 10 9 8 40 40 H 0.97004 * 119.99887 * 359.97438 * 13 11 2 41 41 H 1.08997 * 109.46685 * 299.99450 * 14 13 11 42 42 H 1.08997 * 109.47232 * 60.00082 * 14 13 11 43 43 H 1.09004 * 109.47206 * 59.99415 * 16 15 14 44 44 H 1.08998 * 109.47416 * 180.02562 * 16 15 14 45 45 H 1.09000 * 109.46993 * 300.00443 * 16 15 14 46 46 H 1.08992 * 109.47035 * 59.99870 * 17 15 14 47 47 H 1.08998 * 109.47035 * 180.02562 * 17 15 14 48 48 H 1.08994 * 109.46990 * 299.99745 * 17 15 14 49 49 H 1.09004 * 109.47182 * 299.99544 * 18 15 14 50 50 H 1.08997 * 109.47170 * 60.00346 * 18 15 14 51 51 H 0.97008 * 119.99674 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 2.9643 0.9136 -1.9824 6 6 3.3222 2.9713 -1.4457 7 6 3.5071 3.4472 -2.8898 8 6 2.1326 3.6878 -3.5196 9 8 1.3640 2.4847 -3.4564 10 6 1.1187 2.0181 -2.1281 11 6 2.1389 -1.1672 -0.0005 12 8 3.3547 -1.1673 -0.0010 13 7 1.4650 -2.3344 -0.0016 14 6 2.1975 -3.6032 -0.0016 15 6 1.2032 -4.7661 -0.0022 16 6 0.3231 -4.6854 1.2467 17 6 0.3241 -4.6847 -1.2518 18 6 1.9683 -6.0911 -0.0029 19 6 0.9890 -7.2365 -0.0041 20 1 -0.0729 -7.0391 -0.0040 21 6 1.4485 -8.5365 -0.0044 22 7 2.7415 -8.7768 -0.0040 23 14 0.2346 -9.9563 -0.0052 24 1 -1.1512 -9.4227 -0.0049 25 1 0.4454 -10.7871 -1.2179 26 1 0.4446 -10.7877 1.2071 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 3.1499 1.1384 0.5138 31 1 1.6084 2.0284 0.5138 32 1 2.8334 3.7529 -0.8640 33 1 4.2943 2.7449 -1.0077 34 1 4.0786 4.3753 -2.8973 35 1 4.0411 2.6859 -3.4587 36 1 1.6164 4.4780 -2.9744 37 1 2.2568 3.9856 -4.5607 38 1 0.5127 1.1130 -2.1669 39 1 0.5893 2.7865 -1.5648 40 1 0.4950 -2.3344 -0.0016 41 1 2.8248 -3.6604 -0.8911 42 1 2.8235 -3.6613 0.8889 43 1 -0.2218 -3.7413 1.2468 44 1 -0.3849 -5.5141 1.2465 45 1 0.9495 -4.7433 2.1369 46 1 0.9510 -4.7422 -2.1415 47 1 -0.3846 -5.5129 -1.2520 48 1 -0.2209 -3.7408 -1.2517 49 1 2.5949 -6.1484 -0.8929 50 1 2.5948 -6.1493 0.8871 51 1 3.0649 -9.6914 -0.0038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358737073.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:47:32 Heat of formation + Delta-G solvation = -96.134974 kcal Electronic energy + Delta-G solvation = -27199.920947 eV Core-core repulsion = 23519.698296 eV Total energy + Delta-G solvation = -3680.222651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.42100 -39.38880 -37.34258 -35.82495 -34.20139 -33.42439 -32.16924 -31.43678 -27.83368 -27.18612 -26.55569 -26.49986 -25.31813 -25.03095 -23.04031 -22.23176 -20.41455 -19.77316 -18.62410 -17.50783 -16.72403 -16.44107 -16.34598 -16.11671 -15.50450 -15.08346 -14.74399 -14.60604 -14.33831 -14.11443 -13.89060 -13.44876 -13.15264 -13.04781 -13.01274 -12.79616 -12.66187 -12.48655 -12.17648 -12.06004 -11.99784 -11.46641 -11.22230 -11.16796 -11.07702 -11.01087 -10.82716 -10.63367 -10.57665 -10.38281 -10.22458 -9.96986 -9.86288 -9.71227 -9.19056 -8.90458 -8.90167 -8.45560 -8.35085 -5.98931 -4.00072 2.71378 3.30749 3.36670 3.38826 3.41090 3.61958 4.08060 4.45907 4.46380 4.50647 4.54384 4.63074 4.84832 4.88649 5.00520 5.06781 5.16041 5.22663 5.29809 5.33693 5.36695 5.45213 5.51399 5.54741 5.63697 5.66333 5.69964 5.76693 5.77083 5.87246 6.07407 6.18736 6.22591 6.28560 6.43161 6.45148 6.61773 6.64222 6.81944 6.92450 6.97121 7.08109 7.09124 7.16018 7.66072 7.78344 7.99924 8.11185 8.41808 8.77785 9.04953 9.62979 11.12579 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.027707 B = 0.002445 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.346334 B =11450.451709 C =11473.216457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.638 5.638 3 C 0.143 3.857 4 C -0.141 4.141 5 H 0.086 0.914 6 C -0.114 4.114 7 C -0.156 4.156 8 C 0.060 3.940 9 O -0.382 6.382 10 C 0.066 3.934 11 C 0.702 3.298 12 O -0.590 6.590 13 N -0.736 5.736 14 C 0.146 3.854 15 C -0.072 4.072 16 C -0.126 4.126 17 C -0.126 4.126 18 C 0.036 3.964 19 C -0.510 4.510 20 H 0.060 0.940 21 C 0.055 3.945 22 N -0.894 5.894 23 Si 0.889 3.111 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.394 0.606 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.067 0.933 45 H 0.047 0.953 46 H 0.048 0.952 47 H 0.066 0.934 48 H 0.027 0.973 49 H 0.019 0.981 50 H 0.019 0.981 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 26.100 -1.865 26.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.376 5.376 3 C 0.019 3.981 4 C -0.161 4.161 5 H 0.105 0.895 6 C -0.152 4.152 7 C -0.194 4.194 8 C -0.017 4.017 9 O -0.301 6.301 10 C -0.010 4.010 11 C 0.403 3.597 12 O -0.468 6.468 13 N -0.392 5.392 14 C 0.022 3.978 15 C -0.073 4.073 16 C -0.183 4.183 17 C -0.183 4.183 18 C -0.002 4.002 19 C -0.548 4.548 20 H 0.078 0.922 21 C -0.146 4.146 22 N -0.534 5.534 23 Si 0.717 3.283 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.212 1.212 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.230 0.770 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.046 0.954 49 H 0.037 0.963 50 H 0.037 0.963 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.154 25.823 -2.014 26.232 hybrid contribution -0.948 -0.752 0.236 1.233 sum -5.102 25.071 -1.778 25.646 Atomic orbital electron populations 1.21826 0.80224 1.03075 1.01662 1.47010 1.06058 1.05107 1.79448 1.21256 0.97977 0.83516 0.95322 1.22261 0.97381 0.98758 0.97716 0.89518 1.21553 1.00471 0.96628 0.96591 1.22179 0.98152 1.02207 0.96830 1.22575 0.90880 0.86862 1.01414 1.87964 1.72861 1.42095 1.27181 1.22764 0.95826 0.99191 0.83262 1.15948 0.85384 0.80413 0.77967 1.90906 1.11594 1.86232 1.58090 1.45528 1.09937 1.04977 1.78802 1.21495 0.94357 0.80265 1.01662 1.20910 0.95341 0.95987 0.95014 1.21750 0.99611 0.99565 0.97368 1.21747 0.99609 0.99592 0.97354 1.19097 0.95026 0.88529 0.97546 1.21217 0.92963 0.90511 1.50091 0.92220 1.25021 0.94973 0.98971 0.95605 1.69982 1.12445 1.19968 1.50974 0.86593 0.81471 0.82737 0.77516 1.19819 1.21139 1.21162 0.92590 0.91295 0.90895 0.89393 0.90798 0.91831 0.90995 0.90879 0.90890 0.93376 0.89065 0.88707 0.93474 0.76958 0.92022 0.92062 0.95467 0.91446 0.93361 0.93335 0.91469 0.95417 0.96285 0.96306 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 9.28 59.85 0.56 1.14 16 2 N -0.64 -7.21 2.71 -187.35 -0.51 -7.72 16 3 C 0.14 1.39 4.93 -4.04 -0.02 1.37 16 4 C -0.14 -1.37 2.59 -90.47 -0.23 -1.61 16 5 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 6 C -0.11 -0.90 5.31 -26.55 -0.14 -1.04 16 7 C -0.16 -1.18 6.14 -26.59 -0.16 -1.34 16 8 C 0.06 0.47 6.84 37.21 0.25 0.72 16 9 O -0.38 -4.14 10.77 -35.23 -0.38 -4.52 16 10 C 0.07 0.60 5.62 37.21 0.21 0.81 16 11 C 0.70 11.03 8.28 -86.91 -0.72 10.31 16 12 O -0.59 -11.67 15.92 5.29 0.08 -11.58 16 13 N -0.74 -11.11 4.82 -65.22 -0.31 -11.43 16 14 C 0.15 2.65 4.56 -4.04 -0.02 2.63 16 15 C -0.07 -1.37 0.54 -154.51 -0.08 -1.46 16 16 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 17 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 18 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 19 C -0.51 -13.53 7.65 -34.44 -0.26 -13.79 16 20 H 0.06 1.52 5.68 -52.48 -0.30 1.23 16 21 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 22 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 23 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 28 H 0.07 0.53 6.37 -51.93 -0.33 0.20 16 29 H 0.07 0.40 7.89 -51.93 -0.41 -0.01 16 30 H 0.09 1.02 7.42 -51.93 -0.39 0.63 16 31 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.89 5.62 -51.93 -0.29 0.60 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.39 5.03 3.89 -40.82 -0.16 4.88 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 44 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 48 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 49 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 386.16 15.07 5.82 5.82 Total: -1.00 -32.47 386.16 -8.89 -41.36 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -9.07 Total: 1.52 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.24 Total: -3.88 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.09 Total: -44.92 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.29 Total: -16.11 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.47 -8.89 -41.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358737073.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.773 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds