Wall clock time and date at job start Fri Apr 10 2020 22:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46903 * 2 1 4 4 C 1.53001 * 109.47155 * 179.97438 * 3 2 1 5 5 O 1.42894 * 109.47058 * 180.02562 * 4 3 2 6 6 C 1.42902 * 113.99693 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47218 * 329.99988 * 6 5 4 8 8 C 1.52998 * 109.47195 * 90.00285 * 6 5 4 9 9 C 1.50705 * 109.47247 * 209.99848 * 6 5 4 10 10 O 1.21287 * 119.99611 * 355.00419 * 9 6 5 11 11 N 1.34769 * 120.00213 * 175.00103 * 9 6 5 12 12 C 1.46505 * 120.00232 * 180.02562 * 11 9 6 13 13 C 1.52999 * 109.47399 * 179.97438 * 12 11 9 14 14 H 1.09002 * 109.50004 * 305.06935 * 13 12 11 15 15 C 1.53029 * 109.49848 * 184.99825 * 13 12 11 16 16 C 1.53047 * 109.52911 * 178.65842 * 15 13 12 17 17 C 1.53167 * 109.32342 * 61.37643 * 16 15 13 18 18 N 1.46924 * 108.76511 * 305.35609 * 17 16 15 19 19 C 1.36944 * 120.62885 * 233.62893 * 18 17 16 20 20 H 1.08001 * 119.99893 * 152.60039 * 19 18 17 21 21 C 1.38804 * 120.00084 * 332.60549 * 19 18 17 22 22 N 1.31621 * 120.00078 * 159.35740 * 21 19 18 23 23 Si 1.86799 * 119.99938 * 339.36118 * 21 19 18 24 24 H 1.48502 * 109.47406 * 92.90053 * 23 21 19 25 25 H 1.48504 * 109.47139 * 212.90194 * 23 21 19 26 26 H 1.48494 * 109.47265 * 332.89921 * 23 21 19 27 27 C 1.46927 * 118.74200 * 53.61048 * 18 17 16 28 28 H 1.08998 * 109.47437 * 60.00062 * 1 2 3 29 29 H 1.09008 * 109.47023 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47526 * 299.99608 * 1 2 3 31 31 H 1.08996 * 109.47267 * 240.00447 * 2 1 3 32 32 H 1.08998 * 109.47437 * 119.99938 * 2 1 3 33 33 H 1.09000 * 109.47187 * 60.00444 * 3 2 1 34 34 H 1.08998 * 109.47024 * 300.00191 * 3 2 1 35 35 H 1.09009 * 109.46845 * 60.00173 * 4 3 2 36 36 H 1.09005 * 109.47045 * 300.00607 * 4 3 2 37 37 H 1.09004 * 109.47591 * 179.97438 * 8 6 5 38 38 H 1.09005 * 109.47311 * 299.99711 * 8 6 5 39 39 H 1.08998 * 109.47279 * 59.99741 * 8 6 5 40 40 H 0.96999 * 120.00214 * 359.97438 * 11 9 6 41 41 H 1.09004 * 109.46790 * 59.99962 * 12 11 9 42 42 H 1.08992 * 109.47150 * 300.00193 * 12 11 9 43 43 H 1.08994 * 109.46451 * 298.67747 * 15 13 12 44 44 H 1.09008 * 109.46122 * 58.65088 * 15 13 12 45 45 H 1.09001 * 109.49978 * 181.30990 * 16 15 13 46 46 H 1.08999 * 109.49526 * 301.41082 * 16 15 13 47 47 H 1.08992 * 109.58991 * 185.57128 * 17 16 15 48 48 H 1.09004 * 109.70724 * 65.20613 * 17 16 15 49 49 H 0.96998 * 119.99967 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.58754 * 186.60098 * 27 18 17 51 51 H 1.09004 * 109.70203 * 66.25247 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 8 4.0462 2.7899 0.0012 6 6 5.4707 2.9027 0.0013 7 1 5.9032 2.0440 0.5147 8 6 5.9791 2.9437 -1.4412 9 6 5.8744 4.1687 0.7123 10 8 5.0258 4.9469 1.0936 11 7 7.1781 4.4362 0.9243 12 6 7.5705 5.6666 1.6160 13 6 9.0954 5.7257 1.7262 14 1 9.4606 4.8194 2.2093 15 6 9.5006 6.9458 2.5562 16 6 11.0242 6.9870 2.6951 17 6 11.6565 7.1160 1.3060 18 7 11.1574 6.0260 0.4565 19 6 12.0287 5.1988 -0.2007 20 1 11.7350 4.1882 -0.4432 21 6 13.2892 5.6593 -0.5552 22 7 14.2567 4.8024 -0.8047 23 14 13.6126 7.4949 -0.6781 24 1 14.1355 7.9935 0.6193 25 1 14.6123 7.7511 -1.7460 26 1 12.3472 8.1997 -1.0055 27 6 9.7058 5.8401 0.3259 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.9336 0.9287 -0.8892 36 1 3.9329 0.9288 0.8909 37 1 7.0657 3.0302 -1.4412 38 1 5.6873 2.0280 -1.9555 39 1 5.5466 3.8024 -1.9546 40 1 7.8567 3.8136 0.6197 41 1 7.1337 5.6771 2.6146 42 1 7.2128 6.5292 1.0539 43 1 9.1565 7.8532 2.0600 44 1 9.0475 6.8789 3.5454 45 1 11.3109 7.8431 3.3058 46 1 11.3712 6.0688 3.1691 47 1 12.7409 7.0464 1.3902 48 1 11.3849 8.0756 0.8662 49 1 15.1375 5.1242 -1.0528 50 1 9.5033 4.9287 -0.2367 51 1 9.2712 6.6942 -0.1936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359710907.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:47:49 Heat of formation + Delta-G solvation = -107.916479 kcal Electronic energy + Delta-G solvation = -26444.908365 eV Core-core repulsion = 22764.174829 eV Total energy + Delta-G solvation = -3680.733536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11737 -39.70652 -38.80268 -36.33532 -35.91969 -34.75523 -33.11827 -32.61120 -31.68111 -29.76583 -27.53253 -27.00440 -25.26170 -24.04787 -23.65122 -22.82921 -22.08477 -21.43378 -20.67627 -18.78863 -18.23644 -18.02189 -17.25206 -17.11407 -16.67817 -16.41682 -15.98544 -15.56424 -15.46235 -15.26231 -15.05792 -14.84436 -14.54352 -14.25592 -14.16912 -13.96536 -13.91499 -13.50466 -13.28908 -13.27599 -13.18747 -13.12898 -12.68976 -12.55632 -12.30440 -12.16548 -12.10926 -11.95446 -11.82063 -11.68841 -11.58721 -11.53501 -11.32961 -11.24998 -10.96235 -10.65396 -10.46595 -10.10435 -8.91209 -8.15325 -5.45948 1.29829 1.41670 1.49723 1.55229 1.86321 2.42409 2.87790 3.06678 3.32617 3.66068 3.86154 3.90644 3.94577 3.97220 4.02716 4.04260 4.14384 4.21383 4.25643 4.39723 4.41658 4.44112 4.54517 4.64648 4.66705 4.70422 4.75984 4.79230 4.83117 4.84944 4.91293 4.95453 5.00218 5.04371 5.09090 5.15264 5.18716 5.24523 5.26460 5.29814 5.35194 5.42433 5.44926 5.58389 5.88289 6.11077 6.14389 6.52874 6.93255 7.19079 7.64264 8.05597 9.04119 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.023982 B = 0.002382 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.280840 B =11752.860796 C =12526.777342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.118 4.118 4 C 0.053 3.947 5 O -0.388 6.388 6 C 0.073 3.927 7 H 0.113 0.887 8 C -0.167 4.167 9 C 0.510 3.490 10 O -0.574 6.574 11 N -0.714 5.714 12 C 0.137 3.863 13 C -0.103 4.103 14 H 0.077 0.923 15 C -0.099 4.099 16 C -0.126 4.126 17 C 0.115 3.885 18 N -0.619 5.619 19 C -0.242 4.242 20 H 0.060 0.940 21 C -0.035 4.035 22 N -0.955 5.955 23 Si 0.942 3.058 24 H -0.277 1.277 25 H -0.314 1.314 26 H -0.265 1.265 27 C 0.151 3.849 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.413 0.587 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.046 0.954 48 H 0.028 0.972 49 H 0.260 0.740 50 H 0.061 0.939 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.703 -7.043 4.206 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.155 4.155 4 C -0.023 4.023 5 O -0.308 6.308 6 C 0.012 3.988 7 H 0.131 0.869 8 C -0.224 4.224 9 C 0.297 3.703 10 O -0.453 6.453 11 N -0.368 5.368 12 C 0.013 3.987 13 C -0.123 4.123 14 H 0.095 0.905 15 C -0.137 4.137 16 C -0.165 4.165 17 C -0.010 4.010 18 N -0.343 5.343 19 C -0.372 4.372 20 H 0.078 0.922 21 C -0.230 4.230 22 N -0.602 5.602 23 Si 0.772 3.228 24 H -0.204 1.204 25 H -0.243 1.243 26 H -0.190 1.190 27 C 0.026 3.974 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.250 0.750 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.046 0.954 49 H 0.069 0.931 50 H 0.080 0.920 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -22.297 -6.346 4.423 23.600 hybrid contribution 1.264 0.427 -0.535 1.438 sum -21.033 -5.919 3.888 22.193 Atomic orbital electron populations 1.21770 0.95164 1.02261 1.01883 1.21425 0.96474 0.94678 1.02919 1.21547 0.93053 0.98318 1.02614 1.22857 0.95651 0.82334 1.01455 1.88005 1.19271 1.28314 1.95161 1.21972 0.83398 0.95795 0.97627 0.86898 1.22228 1.02446 1.03994 0.93781 1.20930 0.82402 0.88130 0.78852 1.90681 1.51493 1.50682 1.52398 1.45959 1.06943 1.24459 1.59405 1.21295 0.93885 0.86353 0.97151 1.21732 0.92666 1.00218 0.97695 0.90510 1.21368 0.94951 0.97135 1.00269 1.21893 0.96279 1.02097 0.96240 1.21433 0.97434 0.90332 0.91816 1.44478 1.02080 1.35231 1.52520 1.18895 0.94719 0.93249 1.30337 0.92207 1.25850 0.96350 1.00812 0.99993 1.69951 1.02178 1.35310 1.52715 0.85986 0.77069 0.83286 0.76455 1.20373 1.24304 1.19021 1.21108 0.82136 0.99331 0.94784 0.92720 0.91642 0.92938 0.90911 0.91259 0.92352 0.91747 0.91393 0.92253 0.89668 0.89301 0.92696 0.75040 0.91032 0.92134 0.91672 0.89844 0.90115 0.92498 0.93579 0.95370 0.93102 0.92009 0.95617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.87 16 2 C -0.12 -1.27 5.93 30.59 0.18 -1.09 16 3 C -0.12 -1.81 5.58 30.60 0.17 -1.64 16 4 C 0.05 0.86 5.75 71.98 0.41 1.27 16 5 O -0.39 -9.36 9.53 -129.99 -1.24 -10.60 16 6 C 0.07 1.49 3.13 29.85 0.09 1.58 16 7 H 0.11 1.64 7.79 -2.39 -0.02 1.62 16 8 C -0.17 -2.88 9.48 71.98 0.68 -2.19 16 9 C 0.51 13.72 7.18 87.66 0.63 14.35 16 10 O -0.57 -20.72 16.51 15.94 0.26 -20.46 16 11 N -0.71 -16.66 5.29 -463.05 -2.45 -19.11 16 12 C 0.14 3.40 5.07 86.38 0.44 3.84 16 13 C -0.10 -2.80 2.37 -10.72 -0.03 -2.83 16 14 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 15 C -0.10 -2.56 5.17 30.62 0.16 -2.40 16 16 C -0.13 -3.90 6.08 30.67 0.19 -3.72 16 17 C 0.11 4.66 4.21 86.35 0.36 5.02 16 18 N -0.62 -27.46 2.77 -699.15 -1.94 -29.40 16 19 C -0.24 -13.11 10.03 84.03 0.84 -12.27 16 20 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 21 C -0.04 -2.02 5.23 84.86 0.44 -1.57 16 22 N -0.96 -58.74 13.97 21.65 0.30 -58.44 16 23 Si 0.94 46.14 24.34 68.60 1.67 47.81 16 24 H -0.28 -12.86 6.62 99.48 0.66 -12.20 16 25 H -0.31 -15.74 7.11 99.48 0.71 -15.04 16 26 H -0.27 -12.56 6.63 99.48 0.66 -11.90 16 27 C 0.15 5.28 5.60 86.36 0.48 5.76 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 0.85 7.87 -2.38 -0.02 0.83 16 36 H 0.06 0.83 8.09 -2.38 -0.02 0.81 16 37 H 0.08 1.32 7.93 -2.39 -0.02 1.30 16 38 H 0.09 1.18 7.87 -2.38 -0.02 1.16 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.41 8.17 7.49 -92.71 -0.69 7.47 16 41 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 46 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.05 2.10 4.49 -2.39 -0.01 2.09 16 48 H 0.03 1.13 7.07 -2.38 -0.02 1.11 16 49 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 50 H 0.06 2.09 7.14 -2.39 -0.02 2.07 16 51 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -72.38 395.87 2.47 -69.90 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.09 Total: 17.04 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 5.78 Total: 3.25 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -4.08 Total: -106.95 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.98 Total: -31.06 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.67 Total: 47.81 kcal Total: -72.38 2.47 -69.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359710907.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.013 kcal (2) G-P(sol) polarization free energy of solvation -72.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds