Wall clock time and date at job start Fri Apr 10 2020 22:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00318 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00009 * 3 2 1 5 5 H 1.48498 * 109.47251 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47156 * 119.99889 * 3 2 1 7 7 C 1.37885 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99559 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46431 * 175.84935 * 9 7 2 11 11 C 1.46901 * 111.00032 * 75.58641 * 10 9 7 12 12 C 1.50699 * 109.47031 * 189.99964 * 11 10 9 13 13 C 1.38216 * 119.99161 * 89.99830 * 12 11 10 14 14 C 1.38362 * 120.01630 * 179.97438 * 13 12 11 15 15 Cl 1.73597 * 120.00616 * 180.02562 * 14 13 12 16 16 C 1.38335 * 119.98561 * 359.97438 * 14 13 12 17 17 C 1.38333 * 119.97264 * 0.02562 * 16 14 13 18 18 Cl 1.73593 * 120.00677 * 179.97438 * 17 16 14 19 19 C 1.38228 * 119.98309 * 269.99764 * 12 11 10 20 20 C 1.46904 * 110.99933 * 199.53323 * 10 9 7 21 21 C 1.53001 * 109.46908 * 71.23196 * 20 10 9 22 22 C 1.53002 * 117.50013 * 244.20931 * 21 20 10 23 23 C 1.52996 * 117.50184 * 175.55078 * 21 20 10 24 24 H 0.97005 * 120.00030 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46903 * 55.85516 * 9 7 2 26 26 H 1.08991 * 109.47541 * 295.84909 * 9 7 2 27 27 H 1.08994 * 109.47283 * 69.99681 * 11 10 9 28 28 H 1.09007 * 109.46524 * 309.99372 * 11 10 9 29 29 H 1.08000 * 119.98920 * 0.26950 * 13 12 11 30 30 H 1.07991 * 120.01216 * 179.97438 * 16 14 13 31 31 H 1.08002 * 119.99475 * 359.97438 * 19 12 11 32 32 H 1.08994 * 109.47410 * 191.23142 * 20 10 9 33 33 H 1.09001 * 109.47174 * 311.23355 * 20 10 9 34 34 H 1.09003 * 115.55019 * 29.87378 * 21 20 10 35 35 H 1.09000 * 117.49749 * 359.97438 * 22 21 20 36 36 H 1.09007 * 117.49871 * 145.01885 * 22 21 20 37 37 H 1.09005 * 117.49918 * 214.98356 * 23 21 20 38 38 H 1.09002 * 117.49796 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 7 2.2023 -3.6140 -0.0991 11 6 2.8853 -3.8393 1.1818 12 6 4.0175 -4.8137 0.9829 13 6 5.2782 -4.3507 0.6562 14 6 6.3182 -5.2448 0.4739 15 17 7.9016 -4.6630 0.0643 16 6 6.0962 -6.6025 0.6192 17 6 4.8343 -7.0653 0.9461 18 17 4.5545 -8.7689 1.1279 19 6 3.7948 -6.1703 1.1271 20 6 1.5333 -4.8375 -0.5612 21 6 1.1645 -4.6900 -2.0387 22 6 -0.3224 -4.6919 -2.3994 23 6 0.5491 -5.9039 -2.7378 24 1 -0.4850 0.8401 -0.0004 25 1 0.5700 -2.5255 -0.8502 26 1 0.6808 -2.5896 0.9251 27 1 2.1779 -4.2467 1.9040 28 1 3.2806 -2.8940 1.5539 29 1 5.4526 -3.2904 0.5479 30 1 6.9075 -7.3008 0.4766 31 1 2.8096 -6.5315 1.3828 32 1 2.2042 -5.6874 -0.4373 33 1 0.6286 -5.0003 0.0246 34 1 1.8241 -4.0515 -2.6265 35 1 -1.0379 -4.7986 -1.5840 36 1 -0.6410 -4.0550 -3.2246 37 1 0.8037 -6.0638 -3.7856 38 1 0.4074 -6.8077 -2.1452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353433708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:48:31 Heat of formation + Delta-G solvation = 33.667360 kcal Electronic energy + Delta-G solvation = -21188.233042 eV Core-core repulsion = 17889.839426 eV Total energy + Delta-G solvation = -3298.393616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 313.070 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.70061 -37.74308 -36.79796 -36.42842 -35.36123 -32.70853 -31.31010 -30.65807 -27.67045 -26.76127 -24.04377 -22.78544 -22.08986 -21.75363 -20.74453 -19.60559 -17.13478 -16.47103 -15.95319 -15.77616 -15.32304 -14.85935 -14.46704 -14.31480 -14.09958 -13.62169 -13.58167 -13.02200 -12.41641 -12.38294 -12.04198 -12.02188 -11.81418 -11.39186 -11.33403 -11.17547 -10.98870 -10.98618 -10.90376 -10.78210 -10.68964 -10.53758 -10.00937 -9.87671 -9.41714 -9.26555 -8.78580 -8.70387 -8.43425 -7.37401 -6.04040 -4.05540 0.99994 1.07848 1.76191 2.23878 3.32033 3.36792 3.39079 3.43687 4.20604 4.41050 4.63738 4.82958 4.90449 5.01466 5.23009 5.24042 5.29544 5.31422 5.33969 5.52372 5.64032 5.83578 5.89964 5.94221 5.97792 6.03600 6.11485 6.20763 6.28542 6.29467 6.46238 6.52318 6.63136 6.77325 7.19148 7.29956 7.77198 8.05862 8.12193 8.48183 9.01133 9.58597 11.06278 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.010753 B = 0.004593 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.264974 B = 6094.831362 C = 7863.511652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.526 5.526 11 C 0.096 3.904 12 C -0.034 4.034 13 C -0.082 4.082 14 C -0.023 4.023 15 Cl -0.066 7.066 16 C -0.114 4.114 17 C -0.025 4.025 18 Cl -0.069 7.069 19 C -0.104 4.104 20 C 0.079 3.921 21 C -0.127 4.127 22 C -0.178 4.178 23 C -0.189 4.189 24 H 0.261 0.739 25 H 0.043 0.957 26 H -0.011 1.011 27 H 0.036 0.964 28 H 0.098 0.902 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.675 -14.563 0.994 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.250 5.250 11 C -0.032 4.032 12 C -0.036 4.036 13 C -0.101 4.101 14 C -0.050 4.050 15 Cl -0.037 7.037 16 C -0.133 4.133 17 C -0.051 4.051 18 Cl -0.040 7.040 19 C -0.124 4.124 20 C -0.049 4.049 21 C -0.146 4.146 22 C -0.215 4.215 23 C -0.227 4.227 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.007 0.993 27 H 0.055 0.945 28 H 0.117 0.883 29 H 0.162 0.838 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.966 -14.388 0.632 16.964 hybrid contribution -0.142 0.606 0.466 0.777 sum 8.823 -13.782 1.098 16.401 Atomic orbital electron populations 1.69941 1.06025 1.26850 1.50896 1.24958 0.94813 0.99173 0.95472 0.86612 0.79493 0.82956 0.78655 1.20192 1.21422 1.20285 1.21108 0.93418 0.89894 1.50140 0.92005 1.19797 0.90037 0.86909 0.96370 1.62157 1.32150 1.04990 1.25733 1.21039 0.92442 0.97610 0.92119 1.20014 0.94969 0.93271 0.95300 1.21151 0.90853 1.00647 0.97464 1.20721 0.87265 0.93117 1.03930 1.98373 1.24386 1.88816 1.92090 1.20754 0.96341 0.94117 1.02111 1.20631 0.94623 0.85021 1.04870 1.98367 1.96476 1.13025 1.96116 1.21112 0.98477 0.92268 1.00525 1.21727 0.96525 0.93695 0.92983 1.22207 0.95749 1.00047 0.96597 1.22974 0.94353 1.00747 1.03395 1.22943 1.06108 0.92863 1.00776 0.92898 0.93925 0.99328 0.94549 0.88332 0.83802 0.84375 0.84697 0.91513 0.95690 0.87082 0.89247 0.89147 0.89359 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.49 8.60 -34.44 -0.30 -13.79 16 8 H 0.06 1.62 7.67 -52.49 -0.40 1.22 16 9 C 0.19 4.71 4.59 -4.97 -0.02 4.69 16 10 N -0.53 -10.38 4.38 -237.52 -1.04 -11.42 16 11 C 0.10 1.65 4.94 -4.98 -0.02 1.62 16 12 C -0.03 -0.50 4.93 -104.63 -0.52 -1.02 16 13 C -0.08 -1.16 9.48 -39.54 -0.38 -1.54 16 14 C -0.02 -0.30 6.32 -39.50 -0.25 -0.55 16 15 Cl -0.07 -0.78 28.96 -51.86 -1.50 -2.28 16 16 C -0.11 -1.35 9.62 -39.51 -0.38 -1.73 16 17 C -0.02 -0.30 6.32 -39.50 -0.25 -0.55 16 18 Cl -0.07 -0.75 28.96 -51.86 -1.50 -2.25 16 19 C -0.10 -1.36 7.63 -39.54 -0.30 -1.66 16 20 C 0.08 1.35 5.07 -3.82 -0.02 1.33 16 21 C -0.13 -2.14 4.94 -90.62 -0.45 -2.59 16 22 C -0.18 -2.80 9.96 -26.69 -0.27 -3.06 16 23 C -0.19 -2.61 10.25 -26.70 -0.27 -2.89 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.04 1.12 6.91 -51.93 -0.36 0.77 16 26 H -0.01 -0.29 8.00 -51.93 -0.42 -0.71 16 27 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 28 H 0.10 1.82 7.27 -51.93 -0.38 1.44 16 29 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.14 1.63 7.75 -52.49 -0.41 1.23 16 32 H 0.07 1.04 5.17 -51.93 -0.27 0.77 16 33 H 0.02 0.44 7.80 -51.93 -0.40 0.03 16 34 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 35 H 0.09 1.41 8.03 -51.93 -0.42 0.99 16 36 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 348.20 15.07 5.25 5.25 Total: -1.00 -27.35 348.20 -11.74 -39.10 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.14 Total: 0.93 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -3.52 Total: -20.25 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.30 Total: -36.53 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -3.00 Total: -4.53 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.35 -11.74 -39.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353433708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.763 kcal (2) G-P(sol) polarization free energy of solvation -27.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds